Wall clock time and date at job start Tue Mar 31 2020 11:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00545 * 2 1 4 4 H 1.07993 * 120.00162 * 204.44813 * 3 2 1 5 5 C 1.38810 * 119.99906 * 24.43929 * 3 2 1 6 6 N 1.31619 * 119.99859 * 15.12046 * 5 3 2 7 7 Si 1.86799 * 120.00280 * 195.11907 * 5 3 2 8 8 H 1.48495 * 109.46841 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46990 * 120.00570 * 7 5 3 10 10 H 1.48497 * 109.46814 * 240.00318 * 7 5 3 11 11 C 1.46505 * 119.99693 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45692 * 299.99448 * 11 2 1 13 13 C 1.53196 * 109.30846 * 181.37459 * 12 11 2 14 14 N 1.46924 * 108.77469 * 305.36371 * 13 12 11 15 15 C 1.34778 * 120.63254 * 233.58568 * 14 13 12 16 16 O 1.21717 * 120.00037 * 179.61720 * 15 14 13 17 17 C 1.46499 * 119.99840 * 359.61861 * 15 14 13 18 18 C 1.37780 * 125.85876 * 154.58123 * 17 15 14 19 19 C 1.39931 * 107.68426 * 179.97438 * 18 17 15 20 20 O 1.35118 * 145.13472 * 180.34104 * 19 18 17 21 21 C 1.34381 * 109.62410 * 179.97438 * 20 19 18 22 22 C 1.34468 * 109.44381 * 359.65268 * 21 20 19 23 23 C 1.39134 * 107.40758 * 0.02562 * 19 18 17 24 24 N 1.37108 * 108.11028 * 359.97438 * 23 19 18 25 25 H 0.96994 * 125.74797 * 179.97438 * 24 23 19 26 26 C 1.46929 * 118.73808 * 53.86830 * 14 13 12 27 27 C 1.53039 * 109.45076 * 60.06040 * 11 2 1 28 28 H 1.08996 * 109.46740 * 272.12507 * 1 2 3 29 29 H 1.09002 * 109.46891 * 32.12245 * 1 2 3 30 30 H 1.09000 * 109.47319 * 152.12308 * 1 2 3 31 31 H 0.97000 * 120.00091 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.45914 * 180.02562 * 11 2 1 33 33 H 1.09000 * 109.49647 * 61.42823 * 12 11 2 34 34 H 1.08995 * 109.52694 * 301.33958 * 12 11 2 35 35 H 1.09007 * 109.58260 * 185.57893 * 13 12 11 36 36 H 1.08999 * 109.70254 * 65.22937 * 13 12 11 37 37 H 1.07991 * 126.15295 * 0.02562 * 18 17 15 38 38 H 1.08004 * 125.28157 * 179.86143 * 21 20 19 39 39 H 1.08000 * 126.41045 * 180.22956 * 22 21 20 40 40 H 1.08993 * 109.58467 * 65.91982 * 26 14 13 41 41 H 1.08996 * 109.58521 * 186.35133 * 26 14 13 42 42 H 1.08996 * 109.49243 * 298.56794 * 27 11 2 43 43 H 1.08998 * 109.49876 * 58.66943 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1571 1.2277 -0.3871 5 6 1.5491 2.3342 0.4974 6 7 0.4605 2.2423 1.2315 7 14 2.2857 4.0099 0.1249 8 1 3.4988 3.8417 -0.7148 9 1 1.2906 4.8371 -0.6037 10 1 2.6527 4.6830 1.3966 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6209 -3.3820 1.2623 14 7 2.3842 -4.0911 -0.0026 15 6 1.9578 -5.3696 -0.0037 16 8 1.7587 -5.9438 -1.0583 17 6 1.7339 -6.0682 1.2644 18 6 0.8764 -7.1285 1.4613 19 6 0.9606 -7.4988 2.8081 20 8 0.5114 -8.3539 3.7529 21 6 1.0991 -8.0762 4.9291 22 6 1.9458 -7.0433 4.7735 23 6 1.8780 -6.6483 3.4171 24 7 2.3466 -5.7769 2.4679 25 1 2.9981 -5.0739 2.6165 26 6 2.6272 -3.3819 -1.2662 27 6 1.8285 -2.0697 -1.2514 28 1 -0.3633 0.0381 1.0269 29 1 -0.3633 0.8704 -0.5465 30 1 -0.3634 -0.9084 -0.4805 31 1 0.0410 3.0447 1.5794 32 1 3.2691 -1.0695 0.0000 33 1 0.7603 -2.2926 1.2365 34 1 2.0687 -1.4912 2.1394 35 1 2.2895 -4.0012 2.0959 36 1 3.6843 -3.1667 1.3672 37 1 0.2524 -7.5910 0.7111 38 1 0.9216 -8.6032 5.8549 39 1 2.5620 -6.5983 5.5408 40 1 3.6907 -3.1644 -1.3645 41 1 2.3000 -4.0010 -2.1014 42 1 0.7612 -2.2907 -1.2401 43 1 2.0707 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985457881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:07 Heat of formation + Delta-G solvation = 77.751733 kcal Electronic energy + Delta-G solvation = -26692.599496 eV Core-core repulsion = 22935.511001 eV Total energy + Delta-G solvation = -3757.088495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.12337 -40.64811 -38.87200 -37.55304 -35.19835 -32.59770 -32.33180 -31.39601 -30.44863 -29.93196 -28.36907 -26.04622 -25.31854 -23.77997 -22.88820 -22.03557 -21.40312 -20.88313 -20.06959 -18.93174 -17.85879 -17.37892 -16.78988 -16.44303 -16.06264 -15.63928 -15.26218 -15.11785 -14.55195 -14.00915 -13.86453 -13.78890 -13.60607 -13.43225 -13.29009 -13.09272 -12.98337 -12.36074 -12.32866 -11.92431 -11.67049 -11.57075 -11.09900 -10.92817 -10.83095 -10.45549 -10.31426 -10.26474 -10.24207 -10.06358 -9.91212 -9.65419 -8.74242 -8.71562 -8.56657 -8.01619 -6.78823 -5.78621 -3.25096 0.87237 2.05891 2.33642 2.50521 2.63250 3.00065 3.26756 3.33454 3.41525 3.43021 4.29543 4.40699 4.44020 4.73512 4.79515 5.09874 5.13299 5.21668 5.23872 5.29252 5.33508 5.39468 5.49251 5.62408 5.64029 5.78523 5.89808 5.90999 6.05895 6.13211 6.16229 6.26193 6.39972 6.43305 6.54377 6.74030 6.88855 6.90637 6.96478 7.09919 7.30887 7.31878 7.65726 7.75775 8.02282 8.35413 9.17830 9.81631 10.32048 11.26410 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003071 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.891510 B = 9114.346912 C = 9923.524170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.594 5.594 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.180 3.820 12 C -0.143 4.143 13 C 0.083 3.917 14 N -0.599 5.599 15 C 0.588 3.412 16 O -0.529 6.529 17 C 0.017 3.983 18 C -0.086 4.086 19 C -0.038 4.038 20 O -0.169 6.169 21 C 0.008 3.992 22 C -0.201 4.201 23 C 0.004 3.996 24 N -0.533 5.533 25 H 0.426 0.574 26 C 0.116 3.884 27 C -0.147 4.147 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.000 1.000 31 H 0.252 0.748 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.159 0.841 38 H 0.211 0.789 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -18.143 5.754 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.315 5.315 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.041 4.041 14 N -0.332 5.332 15 C 0.376 3.624 16 O -0.406 6.406 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.090 4.090 20 O -0.067 6.067 21 C -0.060 4.060 22 C -0.222 4.222 23 C -0.109 4.109 24 N -0.144 5.144 25 H 0.272 0.728 26 C -0.006 4.006 27 C -0.187 4.187 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.177 0.823 38 H 0.228 0.772 39 H 0.171 0.829 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.671 -18.351 5.174 19.416 hybrid contribution 0.676 1.557 0.401 1.744 sum 4.347 -16.794 5.575 18.222 Atomic orbital electron populations 1.20725 0.82876 0.95922 0.98810 1.43935 1.01692 1.00140 1.85719 1.19227 0.99329 0.85676 1.34523 0.91485 1.25034 0.98237 0.98574 0.97644 1.70080 1.21808 1.27387 1.35471 0.86229 0.78486 0.84484 0.77594 1.20292 1.21604 1.21769 1.20293 0.96070 0.86112 0.90439 1.22503 0.99994 0.93746 1.02143 1.22440 1.00891 0.95473 0.85245 1.48090 1.65309 1.11266 1.08513 1.16897 0.77566 0.81252 0.86731 1.90849 1.52231 1.66531 1.30950 1.20246 1.02559 1.00988 0.85726 1.19842 1.02903 0.97296 0.91273 1.19277 1.01977 0.95249 0.92500 1.84017 1.57343 1.48871 1.16435 1.24034 0.95376 0.98251 0.88309 1.20570 1.06640 1.01799 0.93184 1.19126 1.02123 0.96785 0.92884 1.42239 1.37298 1.28726 1.06171 0.72761 1.21831 0.99941 0.93652 0.85188 1.22563 1.00331 0.94581 1.01252 0.95614 0.94008 0.98156 0.93785 0.91836 0.91874 0.90350 0.89942 0.90833 0.82325 0.77215 0.82879 0.91295 0.89123 0.91786 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 8.07 59.85 0.48 4.35 16 2 N -0.59 -14.10 2.80 -173.44 -0.49 -14.58 16 3 C -0.26 -6.80 9.55 -15.06 -0.14 -6.95 16 4 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 5 C 0.00 0.11 5.03 -17.43 -0.09 0.02 16 6 N -0.90 -25.74 10.95 55.49 0.61 -25.14 16 7 Si 0.90 21.31 29.58 -169.99 -5.03 16.28 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.18 3.35 2.55 -67.89 -0.17 3.18 16 12 C -0.14 -2.36 5.34 -26.61 -0.14 -2.50 16 13 C 0.08 1.04 5.54 -3.71 -0.02 1.02 16 14 N -0.60 -8.27 2.97 -174.10 -0.52 -8.79 16 15 C 0.59 8.76 7.63 -12.93 -0.10 8.66 16 16 O -0.53 -9.26 16.38 5.17 0.08 -9.17 16 17 C 0.02 0.23 6.45 -81.86 -0.53 -0.30 16 18 C -0.09 -1.14 10.67 -39.12 -0.42 -1.56 16 19 C -0.04 -0.50 8.20 -38.62 -0.32 -0.82 16 20 O -0.17 -1.96 10.68 3.20 0.03 -1.93 16 21 C 0.01 0.07 12.02 29.40 0.35 0.42 16 22 C -0.20 -1.81 10.89 -39.70 -0.43 -2.24 16 23 C 0.00 0.04 8.11 -83.96 -0.68 -0.64 16 24 N -0.53 -6.06 4.87 -7.04 -0.03 -6.09 16 25 H 0.43 3.92 6.12 -40.82 -0.25 3.67 16 26 C 0.12 1.62 6.46 -3.48 -0.02 1.59 16 27 C -0.15 -2.41 5.33 -26.39 -0.14 -2.55 16 28 H 0.03 0.67 7.48 -51.93 -0.39 0.28 16 29 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 30 H 0.00 0.00 6.46 -51.93 -0.34 -0.34 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 33 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 0.92 3.66 -51.95 -0.19 0.73 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.21 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 42 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -32.32 344.59 -8.08 -40.40 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.57 Total: 2.15 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.37 Total: 1.68 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.43 Total: -54.60 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.12 Total: -11.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.32 -8.08 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985457881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.156 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds