Wall clock time and date at job start Tue Mar 31 2020 11:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00545 * 2 1 4 4 H 1.07993 * 120.00162 * 204.44813 * 3 2 1 5 5 C 1.38810 * 119.99906 * 24.43929 * 3 2 1 6 6 N 1.31619 * 119.99859 * 15.12046 * 5 3 2 7 7 Si 1.86799 * 120.00280 * 195.11907 * 5 3 2 8 8 H 1.48495 * 109.46841 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46990 * 120.00570 * 7 5 3 10 10 H 1.48497 * 109.46814 * 240.00318 * 7 5 3 11 11 C 1.46505 * 119.99693 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45692 * 299.99448 * 11 2 1 13 13 C 1.53196 * 109.30846 * 181.37459 * 12 11 2 14 14 N 1.46924 * 108.77469 * 305.36371 * 13 12 11 15 15 C 1.34778 * 120.63254 * 233.58568 * 14 13 12 16 16 O 1.21717 * 120.00037 * 179.61720 * 15 14 13 17 17 C 1.46499 * 119.99840 * 359.61861 * 15 14 13 18 18 C 1.37780 * 125.85876 * 154.58123 * 17 15 14 19 19 C 1.39931 * 107.68426 * 179.97438 * 18 17 15 20 20 O 1.35118 * 145.13472 * 180.34104 * 19 18 17 21 21 C 1.34381 * 109.62410 * 179.97438 * 20 19 18 22 22 C 1.34468 * 109.44381 * 359.65268 * 21 20 19 23 23 C 1.39134 * 107.40758 * 0.02562 * 19 18 17 24 24 N 1.37108 * 108.11028 * 359.97438 * 23 19 18 25 25 H 0.96994 * 125.74797 * 179.97438 * 24 23 19 26 26 C 1.46929 * 118.73808 * 53.86830 * 14 13 12 27 27 C 1.53039 * 109.45076 * 60.06040 * 11 2 1 28 28 H 1.08996 * 109.46740 * 272.12507 * 1 2 3 29 29 H 1.09002 * 109.46891 * 32.12245 * 1 2 3 30 30 H 1.09000 * 109.47319 * 152.12308 * 1 2 3 31 31 H 0.97000 * 120.00091 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.45914 * 180.02562 * 11 2 1 33 33 H 1.09000 * 109.49647 * 61.42823 * 12 11 2 34 34 H 1.08995 * 109.52694 * 301.33958 * 12 11 2 35 35 H 1.09007 * 109.58260 * 185.57893 * 13 12 11 36 36 H 1.08999 * 109.70254 * 65.22937 * 13 12 11 37 37 H 1.07991 * 126.15295 * 0.02562 * 18 17 15 38 38 H 1.08004 * 125.28157 * 179.86143 * 21 20 19 39 39 H 1.08000 * 126.41045 * 180.22956 * 22 21 20 40 40 H 1.08993 * 109.58467 * 65.91982 * 26 14 13 41 41 H 1.08996 * 109.58521 * 186.35133 * 26 14 13 42 42 H 1.08996 * 109.49243 * 298.56794 * 27 11 2 43 43 H 1.08998 * 109.49876 * 58.66943 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1571 1.2277 -0.3871 5 6 1.5491 2.3342 0.4974 6 7 0.4605 2.2423 1.2315 7 14 2.2857 4.0099 0.1249 8 1 3.4988 3.8417 -0.7148 9 1 1.2906 4.8371 -0.6037 10 1 2.6527 4.6830 1.3966 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6209 -3.3820 1.2623 14 7 2.3842 -4.0911 -0.0026 15 6 1.9578 -5.3696 -0.0037 16 8 1.7587 -5.9438 -1.0583 17 6 1.7339 -6.0682 1.2644 18 6 0.8764 -7.1285 1.4613 19 6 0.9606 -7.4988 2.8081 20 8 0.5114 -8.3539 3.7529 21 6 1.0991 -8.0762 4.9291 22 6 1.9458 -7.0433 4.7735 23 6 1.8780 -6.6483 3.4171 24 7 2.3466 -5.7769 2.4679 25 1 2.9981 -5.0739 2.6165 26 6 2.6272 -3.3819 -1.2662 27 6 1.8285 -2.0697 -1.2514 28 1 -0.3633 0.0381 1.0269 29 1 -0.3633 0.8704 -0.5465 30 1 -0.3634 -0.9084 -0.4805 31 1 0.0410 3.0447 1.5794 32 1 3.2691 -1.0695 0.0000 33 1 0.7603 -2.2926 1.2365 34 1 2.0687 -1.4912 2.1394 35 1 2.2895 -4.0012 2.0959 36 1 3.6843 -3.1667 1.3672 37 1 0.2524 -7.5910 0.7111 38 1 0.9216 -8.6032 5.8549 39 1 2.5620 -6.5983 5.5408 40 1 3.6907 -3.1644 -1.3645 41 1 2.3000 -4.0010 -2.1014 42 1 0.7612 -2.2907 -1.2401 43 1 2.0707 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985457881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:06 Heat of formation + Delta-G solvation = 57.760785 kcal Electronic energy + Delta-G solvation = -26693.466369 eV Core-core repulsion = 22935.511001 eV Total energy + Delta-G solvation = -3757.955368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.95964 -41.70779 -39.91791 -38.92750 -36.80965 -34.05721 -33.32093 -32.57112 -31.62170 -31.46361 -29.34054 -28.03732 -26.67094 -24.95189 -24.29044 -23.25798 -22.44186 -21.74591 -21.27669 -20.18169 -18.90613 -18.64210 -18.37659 -17.32345 -17.15918 -17.00079 -16.58998 -16.33852 -15.81513 -15.47293 -15.14502 -15.09398 -14.72040 -14.65266 -14.52340 -14.42588 -13.87060 -13.79746 -13.65287 -13.17469 -13.12882 -12.86887 -12.75115 -12.64554 -12.40981 -12.21984 -12.06159 -11.85598 -11.68858 -11.38344 -11.16726 -11.06345 -10.62505 -9.86437 -9.63587 -8.87817 -8.75809 -7.83081 -5.31278 -0.04175 1.16705 1.45813 1.48604 1.49303 1.57998 1.61655 1.69436 2.03849 2.26087 2.51012 3.30652 3.31829 3.56379 3.66519 3.73044 3.94038 4.00369 4.08361 4.21462 4.31372 4.32274 4.42355 4.48798 4.62922 4.68801 4.71306 4.76006 4.80773 4.85240 4.94839 5.02859 5.04923 5.19521 5.27592 5.43683 5.45881 5.51199 5.57933 5.65379 5.67387 6.13042 6.16880 6.31182 6.34485 6.88279 7.15020 7.87609 8.33724 9.20629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003071 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.891510 B = 9114.346912 C = 9923.524170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.261 4.261 4 H 0.074 0.926 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.964 3.036 8 H -0.264 1.264 9 H -0.296 1.296 10 H -0.293 1.293 11 C 0.174 3.826 12 C -0.133 4.133 13 C 0.094 3.906 14 N -0.598 5.598 15 C 0.590 3.410 16 O -0.561 6.561 17 C -0.003 4.003 18 C -0.094 4.094 19 C -0.074 4.074 20 O -0.185 6.185 21 C 0.028 3.972 22 C -0.215 4.215 23 C 0.006 3.994 24 N -0.524 5.524 25 H 0.436 0.564 26 C 0.123 3.877 27 C -0.135 4.135 28 H -0.001 1.001 29 H 0.012 0.988 30 H 0.023 0.977 31 H 0.247 0.753 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.159 0.841 38 H 0.260 0.740 39 H 0.182 0.818 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -19.354 7.085 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.391 4.391 4 H 0.091 0.909 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.793 3.207 8 H -0.189 1.189 9 H -0.223 1.223 10 H -0.220 1.220 11 C 0.067 3.933 12 C -0.173 4.173 13 C -0.029 4.029 14 N -0.330 5.330 15 C 0.380 3.620 16 O -0.440 6.440 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.125 4.125 20 O -0.084 6.084 21 C -0.039 4.039 22 C -0.236 4.236 23 C -0.108 4.108 24 N -0.136 5.136 25 H 0.284 0.716 26 C 0.001 3.999 27 C -0.175 4.175 28 H 0.018 0.982 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.176 0.824 38 H 0.275 0.725 39 H 0.200 0.800 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.554 -19.574 6.498 21.359 hybrid contribution 0.079 1.812 0.071 1.815 sum 5.634 -17.761 6.569 19.757 Atomic orbital electron populations 1.20390 0.83591 0.95586 0.96920 1.44151 1.01598 1.01452 1.85853 1.19583 0.99475 0.86796 1.33217 0.90866 1.25766 0.98970 1.01834 0.98126 1.70234 1.23366 1.27693 1.37042 0.85246 0.77925 0.80361 0.77155 1.18854 1.22310 1.22002 1.20531 0.95824 0.84643 0.92331 1.22273 0.99422 0.95360 1.00273 1.22440 1.01964 0.93276 0.85240 1.48113 1.64944 1.11060 1.08855 1.17036 0.76818 0.81364 0.86826 1.90825 1.53684 1.67318 1.32212 1.19948 1.03943 1.01679 0.85901 1.19994 1.02889 0.97357 0.91992 1.19400 1.03505 0.96719 0.92834 1.84022 1.58038 1.48978 1.17320 1.25099 0.93174 0.97336 0.88319 1.21023 1.07760 1.02393 0.92461 1.19635 1.01177 0.95976 0.93962 1.42106 1.37192 1.28846 1.05479 0.71624 1.21775 1.00824 0.91986 0.85348 1.22375 0.99692 0.95548 0.99857 0.98240 0.96879 0.95872 0.94429 0.91220 0.93857 0.91633 0.88391 0.87740 0.82361 0.72479 0.80027 0.88802 0.89344 0.93454 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.89 8.07 127.77 1.03 9.92 16 2 N -0.61 -29.04 2.80 -702.63 -1.97 -31.01 16 3 C -0.26 -13.71 9.55 84.03 0.80 -12.90 16 4 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 5 C -0.05 -2.82 5.03 84.86 0.43 -2.40 16 6 N -0.94 -54.72 10.95 21.65 0.24 -54.48 16 7 Si 0.96 44.06 29.58 68.60 2.03 46.09 16 8 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 9 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 11 C 0.17 6.32 2.55 45.02 0.11 6.44 16 12 C -0.13 -4.27 5.34 30.67 0.16 -4.11 16 13 C 0.09 2.14 5.54 86.36 0.48 2.62 16 14 N -0.60 -15.57 2.97 -822.95 -2.44 -18.01 16 15 C 0.59 17.18 7.63 86.40 0.66 17.84 16 16 O -0.56 -19.63 16.38 -4.40 -0.07 -19.70 16 17 C 0.00 -0.07 6.45 40.19 0.26 0.19 16 18 C -0.09 -2.53 10.67 22.57 0.24 -2.29 16 19 C -0.07 -1.85 8.20 22.90 0.19 -1.66 16 20 O -0.19 -3.98 10.68 -11.45 -0.12 -4.10 16 21 C 0.03 0.35 12.02 66.96 0.80 1.15 16 22 C -0.22 -3.18 10.89 22.20 0.24 -2.94 16 23 C 0.01 0.13 8.11 39.32 0.32 0.45 16 24 N -0.52 -11.00 4.87 -176.19 -0.86 -11.86 16 25 H 0.44 6.91 6.12 -92.71 -0.57 6.35 16 26 C 0.12 3.21 6.46 86.51 0.56 3.77 16 27 C -0.13 -4.29 5.33 30.82 0.16 -4.13 16 28 H 0.00 -0.04 7.48 -2.39 -0.02 -0.05 16 29 H 0.01 0.68 7.30 -2.39 -0.02 0.66 16 30 H 0.02 1.00 6.46 -2.39 -0.02 0.99 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.07 2.46 7.87 -2.39 -0.02 2.44 16 33 H 0.04 1.55 7.72 -2.39 -0.02 1.53 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.10 1.98 3.66 -2.43 -0.01 1.97 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.16 4.00 8.06 -2.92 -0.02 3.98 16 38 H 0.26 0.40 8.06 -2.91 -0.02 0.37 16 39 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 2.42 7.00 -2.39 -0.02 2.41 16 42 H 0.05 1.66 6.72 -2.39 -0.02 1.64 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -71.97 344.59 3.74 -68.23 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.48 Total: 12.90 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.45 Total: 11.95 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -5.03 Total: -115.36 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.19 Total: -23.80 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.97 3.74 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985457881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.989 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds