Wall clock time and date at job start Tue Mar 31 2020 11:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34780 * 119.99803 * 2 1 4 4 O 1.21554 * 119.99922 * 175.48650 * 3 2 1 5 5 C 1.47859 * 120.00133 * 355.49335 * 3 2 1 6 6 C 1.39701 * 120.06896 * 221.22122 * 5 3 2 7 7 C 1.38062 * 120.13907 * 179.76676 * 6 5 3 8 8 C 1.38093 * 120.30113 * 0.50825 * 7 6 5 9 9 C 1.39668 * 120.14095 * 359.74382 * 8 7 6 10 10 C 1.47864 * 120.07446 * 179.97438 * 9 8 7 11 11 N 1.34784 * 119.99599 * 0.02562 * 10 9 8 12 12 O 1.21548 * 119.99865 * 180.02562 * 10 9 8 13 13 C 1.39295 * 120.07451 * 41.49242 * 5 3 2 14 14 C 1.46494 * 119.99947 * 180.02562 * 2 1 3 15 15 C 1.53780 * 113.61736 * 59.99826 * 14 2 1 16 16 C 1.53782 * 87.08105 * 220.01991 * 15 14 2 17 17 N 1.46496 * 113.61627 * 139.98279 * 16 15 14 18 18 C 1.36932 * 120.00297 * 154.99931 * 17 16 15 19 19 H 1.08001 * 120.00436 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00233 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99686 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00285 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47390 * 59.99756 * 22 20 18 24 24 H 1.48498 * 109.47187 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47261 * 299.99971 * 22 20 18 26 26 C 1.53779 * 113.61353 * 322.49882 * 14 2 1 27 27 H 1.08992 * 109.47122 * 275.13682 * 1 2 3 28 28 H 1.08998 * 109.46926 * 35.14096 * 1 2 3 29 29 H 1.09003 * 109.47080 * 155.13519 * 1 2 3 30 30 H 1.08004 * 119.93381 * 359.97438 * 6 5 3 31 31 H 1.08006 * 119.84663 * 180.25031 * 7 6 5 32 32 H 1.07994 * 119.93230 * 179.72491 * 8 7 6 33 33 H 0.96998 * 120.00302 * 0.02562 * 11 10 9 34 34 H 0.97001 * 119.99544 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.14755 * 359.96294 * 13 5 3 36 36 H 1.09000 * 112.90572 * 191.25324 * 14 2 1 37 37 H 1.08998 * 113.61166 * 105.47580 * 15 14 2 38 38 H 1.08997 * 113.61388 * 334.56884 * 15 14 2 39 39 H 1.09010 * 113.61297 * 270.88200 * 16 15 14 40 40 H 0.97006 * 120.00086 * 334.99950 * 17 16 15 41 41 H 0.97000 * 119.99422 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61601 * 25.43488 * 26 14 2 43 43 H 1.08999 * 113.61859 * 254.53068 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1689 0.0828 5 6 1.4030 2.4458 -0.1006 6 6 1.8952 3.4751 -0.9067 7 6 1.2067 4.6677 -1.0055 8 6 0.0339 4.8556 -0.3012 9 6 -0.4664 3.8366 0.5125 10 6 -1.7221 4.0396 1.2664 11 7 -2.3854 5.2088 1.1685 12 8 -2.1560 3.1520 1.9745 13 6 0.2205 2.6286 0.6126 14 6 2.1975 -1.2687 -0.0006 15 6 1.8954 -2.1539 -1.2212 16 6 1.9129 -3.3524 -0.2577 17 7 0.8717 -4.3446 -0.5361 18 6 1.0456 -5.6466 -0.1492 19 1 1.9505 -5.9422 0.3608 20 6 0.0592 -6.5868 -0.4136 21 7 -1.0434 -6.2267 -1.0357 22 14 0.2960 -8.3628 0.1148 23 1 0.4627 -8.4226 1.5892 24 1 -0.8928 -9.1598 -0.2812 25 1 1.5062 -8.9178 -0.5430 26 6 1.5374 -2.3614 0.8567 27 1 -0.3633 0.0920 1.0235 28 1 -0.3633 0.8404 -0.5915 29 1 -0.3633 -0.9324 -0.4321 30 1 2.8144 3.3365 -1.4565 31 1 1.5894 5.4589 -1.6333 32 1 -0.4975 5.7925 -0.3794 33 1 -2.0393 5.9169 0.6032 34 1 -3.2093 5.3418 1.6629 35 1 -0.1622 1.8373 1.2401 36 1 3.2624 -1.1438 0.1954 37 1 2.6998 -2.1731 -1.9564 38 1 0.9183 -1.9656 -1.6660 39 1 2.9002 -3.7972 -0.1320 40 1 0.0591 -4.0793 -0.9946 41 1 -1.7325 -6.8839 -1.2207 42 1 0.4624 -2.2299 0.9800 43 1 2.0527 -2.5481 1.7989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999002404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:07 Heat of formation + Delta-G solvation = -0.485344 kcal Electronic energy + Delta-G solvation = -25799.352138 eV Core-core repulsion = 22038.871029 eV Total energy + Delta-G solvation = -3760.481110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90180 -39.91492 -38.57104 -37.59857 -34.94265 -34.26022 -33.18723 -31.47971 -31.38276 -29.86333 -27.12311 -25.29022 -25.04811 -24.40887 -23.70215 -22.33365 -21.04763 -19.72276 -18.90091 -18.30056 -17.52476 -17.09691 -16.73098 -16.46018 -16.31943 -15.57907 -15.14604 -15.03727 -14.74019 -14.45199 -14.33079 -14.10684 -13.79009 -13.17641 -13.01363 -12.90422 -12.75059 -12.35454 -12.23367 -12.04410 -11.80368 -11.56622 -11.24249 -10.88316 -10.59865 -10.51182 -10.45046 -10.28856 -10.14593 -10.04880 -9.84130 -9.55947 -9.42945 -9.36120 -8.89046 -8.47096 -6.98792 -5.79606 -3.08566 0.32491 0.70114 2.29395 2.75688 2.96570 3.07718 3.43846 3.47973 3.48433 3.49259 4.17949 4.29797 4.42611 4.55789 4.58764 4.78974 4.94747 5.10414 5.12972 5.19317 5.21924 5.35661 5.42744 5.45768 5.57736 5.71411 5.78860 5.84196 5.86448 5.91203 5.97095 6.14704 6.26803 6.29202 6.33853 6.36608 6.43547 6.57572 6.77835 6.86415 7.02870 7.45197 7.68805 7.82405 8.10595 8.38825 9.50121 10.06568 10.41232 11.42701 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.002675 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.769206 B =10463.512741 C =11493.683683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.588 5.588 3 C 0.556 3.444 4 O -0.538 6.538 5 C -0.129 4.129 6 C -0.040 4.040 7 C -0.132 4.132 8 C -0.069 4.069 9 C -0.148 4.148 10 C 0.564 3.436 11 N -0.852 5.852 12 O -0.533 6.533 13 C -0.032 4.032 14 C 0.115 3.885 15 C -0.162 4.162 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.175 4.175 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.400 0.600 34 H 0.406 0.594 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 27.957 -0.249 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.319 5.319 3 C 0.344 3.656 4 O -0.416 6.416 5 C -0.133 4.133 6 C -0.059 4.059 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.151 4.151 10 C 0.350 3.650 11 N -0.416 5.416 12 O -0.409 6.409 13 C -0.052 4.052 14 C 0.012 3.988 15 C -0.203 4.203 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.217 4.217 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.230 0.770 34 H 0.238 0.762 35 H 0.168 0.832 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.889 27.028 0.255 27.044 hybrid contribution -0.561 -0.324 0.037 0.649 sum 0.328 26.704 0.293 26.707 Atomic orbital electron populations 1.22117 0.79381 1.04000 1.01999 1.47796 1.07087 1.05734 1.71267 1.18267 0.87041 0.83480 0.76850 1.90773 1.13425 1.87206 1.50241 1.19991 0.96327 0.95710 1.01229 1.21451 0.98458 0.91363 0.94649 1.21071 0.95481 0.97765 1.00701 1.21427 0.95607 0.97630 0.94134 1.19798 0.97165 0.96031 1.02148 1.18227 0.83750 0.82189 0.80839 1.43733 1.29161 1.16906 1.51802 1.90864 1.68162 1.42176 1.39734 1.21784 0.91494 0.96531 0.95349 1.22686 0.97315 0.79958 0.98850 1.23941 1.01906 0.97233 0.97180 1.21335 0.93780 0.87275 0.91890 1.42344 1.18464 1.05214 1.68691 1.19265 1.02079 0.85202 1.31046 0.91042 1.24765 0.96645 0.98292 1.01117 1.69650 1.08222 1.33793 1.46418 0.86253 0.76833 0.84755 0.78255 1.21205 1.21693 1.21207 1.24352 1.01165 0.96456 0.99726 0.91827 0.91130 0.89534 0.84453 0.84543 0.85267 0.77033 0.76249 0.83226 0.86630 0.91664 0.90015 0.90196 0.78092 0.93391 0.89746 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 7.63 59.85 0.46 1.30 16 2 N -0.59 -8.44 3.08 -174.11 -0.54 -8.98 16 3 C 0.56 8.17 7.32 -12.32 -0.09 8.08 16 4 O -0.54 -9.49 16.42 5.32 0.09 -9.41 16 5 C -0.13 -1.51 5.15 -105.02 -0.54 -2.05 16 6 C -0.04 -0.37 9.64 -39.10 -0.38 -0.75 16 7 C -0.13 -0.85 10.02 -39.70 -0.40 -1.25 16 8 C -0.07 -0.42 9.54 -39.10 -0.37 -0.79 16 9 C -0.15 -1.33 5.87 -105.02 -0.62 -1.95 16 10 C 0.56 5.39 8.05 -12.32 -0.10 5.29 16 11 N -0.85 -4.20 8.82 30.53 0.27 -3.93 16 12 O -0.53 -7.44 17.18 5.32 0.09 -7.34 16 13 C -0.03 -0.35 7.16 -38.78 -0.28 -0.63 16 14 C 0.11 1.81 4.22 -67.12 -0.28 1.53 16 15 C -0.16 -2.71 7.35 -25.92 -0.19 -2.90 16 16 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 17 N -0.71 -17.50 5.40 -52.64 -0.28 -17.79 16 18 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.18 -3.04 7.28 -25.92 -0.19 -3.22 16 27 H 0.06 0.76 6.86 -51.93 -0.36 0.41 16 28 H 0.07 0.77 5.99 -51.93 -0.31 0.46 16 29 H 0.09 1.15 6.14 -51.93 -0.32 0.83 16 30 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.13 0.29 6.39 -52.49 -0.34 -0.04 16 33 H 0.40 0.70 6.85 -40.82 -0.28 0.42 16 34 H 0.41 1.60 8.93 -40.82 -0.36 1.23 16 35 H 0.15 1.77 5.11 -52.49 -0.27 1.50 16 36 H 0.12 1.88 7.22 -51.93 -0.37 1.51 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.38 6.97 -51.93 -0.36 1.01 16 39 H 0.08 1.56 8.10 -51.92 -0.42 1.14 16 40 H 0.39 10.02 7.92 -40.82 -0.32 9.69 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.08 1.51 6.60 -51.93 -0.34 1.17 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -35.27 355.63 -8.13 -43.40 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.29 Total: 10.21 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.52 Total: -1.64 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.17 Total: -57.89 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.18 Total: -16.75 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.27 -8.13 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999002404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.916 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds