Wall clock time and date at job start Tue Mar 31 2020 11:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34780 * 119.99803 * 2 1 4 4 O 1.21554 * 119.99922 * 175.48650 * 3 2 1 5 5 C 1.47859 * 120.00133 * 355.49335 * 3 2 1 6 6 C 1.39701 * 120.06896 * 221.22122 * 5 3 2 7 7 C 1.38062 * 120.13907 * 179.76676 * 6 5 3 8 8 C 1.38093 * 120.30113 * 0.50825 * 7 6 5 9 9 C 1.39668 * 120.14095 * 359.74382 * 8 7 6 10 10 C 1.47864 * 120.07446 * 179.97438 * 9 8 7 11 11 N 1.34784 * 119.99599 * 0.02562 * 10 9 8 12 12 O 1.21548 * 119.99865 * 180.02562 * 10 9 8 13 13 C 1.39295 * 120.07451 * 41.49242 * 5 3 2 14 14 C 1.46494 * 119.99947 * 180.02562 * 2 1 3 15 15 C 1.53780 * 113.61736 * 59.99826 * 14 2 1 16 16 C 1.53782 * 87.08105 * 220.01991 * 15 14 2 17 17 N 1.46496 * 113.61627 * 139.98279 * 16 15 14 18 18 C 1.36932 * 120.00297 * 154.99931 * 17 16 15 19 19 H 1.08001 * 120.00436 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00233 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99686 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00285 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47390 * 59.99756 * 22 20 18 24 24 H 1.48498 * 109.47187 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47261 * 299.99971 * 22 20 18 26 26 C 1.53779 * 113.61353 * 322.49882 * 14 2 1 27 27 H 1.08992 * 109.47122 * 275.13682 * 1 2 3 28 28 H 1.08998 * 109.46926 * 35.14096 * 1 2 3 29 29 H 1.09003 * 109.47080 * 155.13519 * 1 2 3 30 30 H 1.08004 * 119.93381 * 359.97438 * 6 5 3 31 31 H 1.08006 * 119.84663 * 180.25031 * 7 6 5 32 32 H 1.07994 * 119.93230 * 179.72491 * 8 7 6 33 33 H 0.96998 * 120.00302 * 0.02562 * 11 10 9 34 34 H 0.97001 * 119.99544 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.14755 * 359.96294 * 13 5 3 36 36 H 1.09000 * 112.90572 * 191.25324 * 14 2 1 37 37 H 1.08998 * 113.61166 * 105.47580 * 15 14 2 38 38 H 1.08997 * 113.61388 * 334.56884 * 15 14 2 39 39 H 1.09010 * 113.61297 * 270.88200 * 16 15 14 40 40 H 0.97006 * 120.00086 * 334.99950 * 17 16 15 41 41 H 0.97000 * 119.99422 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61601 * 25.43488 * 26 14 2 43 43 H 1.08999 * 113.61859 * 254.53068 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1689 0.0828 5 6 1.4030 2.4458 -0.1006 6 6 1.8952 3.4751 -0.9067 7 6 1.2067 4.6677 -1.0055 8 6 0.0339 4.8556 -0.3012 9 6 -0.4664 3.8366 0.5125 10 6 -1.7221 4.0396 1.2664 11 7 -2.3854 5.2088 1.1685 12 8 -2.1560 3.1520 1.9745 13 6 0.2205 2.6286 0.6126 14 6 2.1975 -1.2687 -0.0006 15 6 1.8954 -2.1539 -1.2212 16 6 1.9129 -3.3524 -0.2577 17 7 0.8717 -4.3446 -0.5361 18 6 1.0456 -5.6466 -0.1492 19 1 1.9505 -5.9422 0.3608 20 6 0.0592 -6.5868 -0.4136 21 7 -1.0434 -6.2267 -1.0357 22 14 0.2960 -8.3628 0.1148 23 1 0.4627 -8.4226 1.5892 24 1 -0.8928 -9.1598 -0.2812 25 1 1.5062 -8.9178 -0.5430 26 6 1.5374 -2.3614 0.8567 27 1 -0.3633 0.0920 1.0235 28 1 -0.3633 0.8404 -0.5915 29 1 -0.3633 -0.9324 -0.4321 30 1 2.8144 3.3365 -1.4565 31 1 1.5894 5.4589 -1.6333 32 1 -0.4975 5.7925 -0.3794 33 1 -2.0393 5.9169 0.6032 34 1 -3.2093 5.3418 1.6629 35 1 -0.1622 1.8373 1.2401 36 1 3.2624 -1.1438 0.1954 37 1 2.6998 -2.1731 -1.9564 38 1 0.9183 -1.9656 -1.6660 39 1 2.9002 -3.7972 -0.1320 40 1 0.0591 -4.0793 -0.9946 41 1 -1.7325 -6.8839 -1.2207 42 1 0.4624 -2.2299 0.9800 43 1 2.0527 -2.5481 1.7989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999002404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:06 Heat of formation + Delta-G solvation = -26.946676 kcal Electronic energy + Delta-G solvation = -25800.499588 eV Core-core repulsion = 22038.871029 eV Total energy + Delta-G solvation = -3761.628559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85396 -40.86677 -39.68952 -38.63604 -36.33326 -35.10916 -34.79411 -32.42649 -32.12876 -31.58320 -28.24761 -26.76484 -26.44174 -25.43863 -24.90470 -23.46918 -21.97340 -20.75577 -20.30657 -19.07250 -19.04723 -18.43157 -17.76294 -17.29136 -17.15592 -16.62049 -16.50686 -16.11253 -15.85775 -15.79655 -15.34430 -14.98095 -14.95099 -14.79617 -14.33435 -14.13292 -13.74541 -13.47450 -13.32932 -13.15556 -13.11052 -12.95200 -12.76391 -12.40532 -12.29603 -12.17015 -11.99718 -11.72200 -11.47874 -11.28078 -10.96949 -10.86989 -10.74994 -10.12113 -10.04620 -9.69987 -9.00608 -7.95173 -5.23717 -0.34891 -0.01222 1.45323 1.47884 1.50511 1.56420 1.79954 1.94966 2.46757 2.56806 2.77078 3.30089 3.36108 3.70146 3.73842 3.76495 3.80869 3.90777 4.02922 4.08586 4.13083 4.24255 4.25348 4.33949 4.47126 4.58609 4.69095 4.72865 4.82648 4.84671 4.90105 5.02081 5.10249 5.10752 5.21303 5.27230 5.37698 5.49539 5.60233 5.69788 5.86391 6.26215 6.28355 6.40496 6.95563 7.27335 7.33268 8.07776 8.31968 9.27779 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.002675 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.769206 B =10463.512741 C =11493.683683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.554 3.446 4 O -0.575 6.575 5 C -0.151 4.151 6 C -0.047 4.047 7 C -0.119 4.119 8 C -0.046 4.046 9 C -0.158 4.158 10 C 0.561 3.439 11 N -0.826 5.826 12 O -0.588 6.588 13 C -0.045 4.045 14 C 0.129 3.871 15 C -0.148 4.148 16 C 0.155 3.845 17 N -0.722 5.722 18 C -0.246 4.246 19 H 0.077 0.923 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.277 1.277 26 C -0.165 4.165 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.419 0.581 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 31.085 -0.836 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.320 5.320 3 C 0.344 3.656 4 O -0.456 6.456 5 C -0.154 4.154 6 C -0.066 4.066 7 C -0.137 4.137 8 C -0.065 4.065 9 C -0.161 4.161 10 C 0.347 3.653 11 N -0.390 5.390 12 O -0.470 6.470 13 C -0.065 4.065 14 C 0.025 3.975 15 C -0.188 4.188 16 C 0.045 3.955 17 N -0.360 5.360 18 C -0.378 4.378 19 H 0.095 0.905 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.206 4.206 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.194 0.806 32 H 0.195 0.805 33 H 0.252 0.748 34 H 0.246 0.754 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.081 30.246 -0.335 30.267 hybrid contribution -0.587 -1.097 0.215 1.263 sum 0.494 29.148 -0.121 29.153 Atomic orbital electron populations 1.22148 0.78279 1.04113 1.02413 1.47806 1.07704 1.05328 1.71162 1.18801 0.86795 0.84414 0.75614 1.90738 1.15001 1.87833 1.51980 1.19756 0.97027 0.94954 1.03688 1.21651 0.98839 0.91900 0.94201 1.21502 0.94784 0.97217 1.00158 1.21924 0.95016 0.98151 0.91380 1.19862 0.97021 0.96201 1.02990 1.18397 0.83978 0.82644 0.80289 1.43533 1.28687 1.15802 1.51028 1.90844 1.69582 1.44270 1.42259 1.21631 0.91776 0.97401 0.95688 1.22374 0.97150 0.80496 0.97445 1.23766 1.02222 0.95583 0.97213 1.21613 0.92616 0.87304 0.94016 1.42484 1.19228 1.05352 1.68919 1.19660 1.01872 0.86467 1.29777 0.90517 1.25552 0.96710 1.02243 1.02133 1.69803 1.09071 1.34694 1.48323 0.85233 0.76588 0.80063 0.78004 1.20547 1.22206 1.20350 1.24140 1.00937 0.96256 0.99300 0.91677 0.89435 0.90530 0.84400 0.80582 0.80543 0.74791 0.75379 0.85122 0.86856 0.90710 0.90129 0.90076 0.79265 0.93992 0.90401 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 7.63 127.77 0.97 2.84 16 2 N -0.59 -17.27 3.08 -823.05 -2.54 -19.81 16 3 C 0.55 16.52 7.32 86.79 0.64 17.16 16 4 O -0.57 -20.64 16.42 -3.88 -0.06 -20.70 16 5 C -0.15 -3.45 5.15 -20.12 -0.10 -3.55 16 6 C -0.05 -0.78 9.64 22.58 0.22 -0.56 16 7 C -0.12 -1.01 10.02 22.19 0.22 -0.79 16 8 C -0.05 -0.35 9.54 22.58 0.22 -0.13 16 9 C -0.16 -2.50 5.87 -20.12 -0.12 -2.62 16 10 C 0.56 9.85 8.05 86.79 0.70 10.55 16 11 N -0.83 -5.59 8.82 -175.58 -1.55 -7.14 16 12 O -0.59 -16.61 17.18 -3.87 -0.07 -16.67 16 13 C -0.05 -0.98 7.16 22.79 0.16 -0.82 16 14 C 0.13 4.12 4.22 45.52 0.19 4.31 16 15 C -0.15 -4.97 7.35 31.12 0.23 -4.74 16 16 C 0.16 6.16 4.48 45.52 0.20 6.37 16 17 N -0.72 -36.38 5.40 -320.44 -1.73 -38.11 16 18 C -0.25 -13.68 9.97 84.03 0.84 -12.85 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 21 N -0.97 -59.24 13.06 21.65 0.28 -58.95 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 C -0.16 -5.82 7.28 31.12 0.23 -5.59 16 27 H 0.06 1.65 6.86 -2.39 -0.02 1.64 16 28 H 0.09 1.95 5.99 -2.39 -0.01 1.93 16 29 H 0.08 2.11 6.14 -2.39 -0.01 2.10 16 30 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 32 H 0.18 -0.39 6.39 -2.91 -0.02 -0.41 16 33 H 0.42 -0.51 6.85 -92.71 -0.64 -1.14 16 34 H 0.41 2.17 8.93 -92.71 -0.83 1.34 16 35 H 0.13 3.25 5.11 -2.91 -0.01 3.24 16 36 H 0.11 3.73 7.22 -2.39 -0.02 3.72 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 2.75 6.97 -2.39 -0.02 2.73 16 39 H 0.08 3.19 8.10 -2.38 -0.02 3.17 16 40 H 0.37 20.12 7.92 -92.70 -0.73 19.38 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.08 2.87 6.60 -2.39 -0.02 2.85 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -79.53 355.63 0.32 -79.21 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -1.10 Total: 27.97 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 5.06 Total: 5.79 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.53 Total: -124.01 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.13 Total: -37.38 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -79.53 0.32 -79.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999002404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.268 kcal (2) G-P(sol) polarization free energy of solvation -79.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds