Wall clock time and date at job start Tue Mar 31 2020 11:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34599 * 119.47925 * 2 1 4 4 C 1.38000 * 120.45856 * 180.30140 * 3 2 1 5 5 C 1.47454 * 120.25319 * 179.69351 * 4 3 2 6 6 O 1.21605 * 120.00709 * 359.72951 * 5 4 3 7 7 N 1.34779 * 119.99460 * 179.72824 * 5 4 3 8 8 C 1.46498 * 119.99823 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47252 * 180.02562 * 8 7 5 10 10 C 1.29451 * 117.69445 * 94.99944 * 9 8 7 11 11 C 1.50330 * 123.65007 * 181.14193 * 10 9 8 12 12 N 1.47132 * 109.10280 * 348.53955 * 11 10 9 13 13 C 1.36936 * 121.53492 * 223.15848 * 12 11 10 14 14 H 1.07997 * 120.00400 * 156.23953 * 13 12 11 15 15 C 1.38816 * 119.99772 * 336.23726 * 13 12 11 16 16 N 1.31620 * 119.99998 * 344.47294 * 15 13 12 17 17 Si 1.86801 * 119.99831 * 164.47294 * 15 13 12 18 18 H 1.48498 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47086 * 119.99888 * 17 15 13 20 20 H 1.48500 * 109.46988 * 240.00040 * 17 15 13 21 21 C 1.47334 * 117.08742 * 43.37930 * 12 11 10 22 22 C 1.49968 * 117.69162 * 275.02088 * 9 8 7 23 23 C 1.41590 * 119.48297 * 359.42348 * 4 3 2 24 24 C 1.35966 * 119.01314 * 0.27479 * 23 4 3 25 25 C 1.34537 * 119.48050 * 179.69819 * 2 1 3 26 26 O 1.21970 * 119.74443 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.47461 * 180.29967 * 1 2 3 28 28 H 1.09004 * 109.47281 * 300.30384 * 1 2 3 29 29 H 1.09008 * 109.47085 * 60.30117 * 1 2 3 30 30 H 1.08004 * 119.77033 * 0.02907 * 3 2 1 31 31 H 0.97004 * 120.00195 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47380 * 60.00218 * 8 7 5 33 33 H 1.08996 * 109.47181 * 299.99959 * 8 7 5 34 34 H 1.07993 * 118.17889 * 0.85731 * 10 9 8 35 35 H 1.08999 * 109.52397 * 108.64692 * 11 10 9 36 36 H 1.09002 * 109.52075 * 228.83522 * 11 10 9 37 37 H 0.97003 * 119.99843 * 179.97438 * 16 15 13 38 38 H 1.09008 * 109.77605 * 178.39713 * 21 12 11 39 39 H 1.09005 * 109.78096 * 57.59157 * 21 12 11 40 40 H 1.08993 * 109.31804 * 281.28826 * 22 9 8 41 41 H 1.09003 * 109.31610 * 40.71757 * 22 9 8 42 42 H 1.07998 * 120.49125 * 180.29057 * 23 4 3 43 43 H 1.08005 * 120.25116 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5071 1.1953 -0.0063 5 6 4.2281 2.4816 -0.0130 6 8 3.6069 3.5269 -0.0181 7 7 5.5758 2.4985 -0.0136 8 6 6.2922 3.7764 -0.0198 9 6 7.7772 3.5198 -0.0198 10 6 8.3862 3.5107 -1.1620 11 6 9.8573 3.2444 -1.3196 12 7 10.4977 3.2800 0.0046 13 6 11.6953 3.9133 0.2041 14 1 11.9629 4.2644 1.1897 15 6 12.5655 4.1038 -0.8605 16 7 12.3984 3.4263 -1.9765 17 14 13.9737 5.3219 -0.7093 18 1 13.9424 5.9502 0.6359 19 1 15.2646 4.6116 -0.8944 20 1 13.8332 6.3725 -1.7492 21 6 9.7965 2.5998 1.1074 22 6 8.4452 3.2924 1.3036 23 6 4.2250 -0.0251 -0.0003 24 6 3.5345 -1.1963 0.0058 25 6 2.1271 -1.1712 0.0062 26 8 1.5030 -2.2191 0.0112 27 1 -0.3634 -1.0276 0.0054 28 1 -0.3634 0.5186 0.8873 29 1 -0.3634 0.5092 -0.8927 30 1 1.5751 2.0999 0.0005 31 1 6.0714 1.6647 -0.0099 32 1 6.0221 4.3487 0.8676 33 1 6.0214 4.3404 -0.9123 34 1 7.8043 3.7007 -2.0517 35 1 10.0035 2.2638 -1.7725 36 1 10.3000 4.0104 -1.9564 37 1 13.0063 3.5597 -2.7205 38 1 10.3858 2.6753 2.0214 39 1 9.6401 1.5512 0.8541 40 1 8.5999 4.2510 1.7988 41 1 7.8065 2.6667 1.9271 42 1 5.3050 -0.0256 -0.0003 43 1 4.0618 -2.1389 0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000893783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:00 Heat of formation + Delta-G solvation = 7.357732 kcal Electronic energy + Delta-G solvation = -25545.859412 eV Core-core repulsion = 21785.718404 eV Total energy + Delta-G solvation = -3760.141008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86740 -39.73795 -37.86519 -37.13225 -35.25500 -34.90761 -32.90667 -31.03311 -30.41043 -29.76388 -28.37047 -26.97289 -24.91896 -23.81582 -23.47957 -22.77295 -21.23870 -20.84197 -18.69882 -17.87993 -17.65916 -17.08248 -16.57068 -16.25531 -15.77145 -15.68193 -15.30154 -14.93660 -14.64810 -14.30857 -13.89379 -13.77482 -13.68696 -13.50380 -13.42642 -13.06116 -13.00760 -12.44903 -12.32696 -12.14130 -11.92389 -11.61356 -11.40875 -10.96015 -10.78786 -10.60365 -10.48006 -10.43114 -10.33104 -10.14500 -9.87303 -9.64772 -9.10125 -8.73503 -8.39646 -8.12710 -6.80226 -5.84506 -3.23222 0.36802 0.98849 2.05789 2.54144 2.75321 3.34904 3.40751 3.42889 3.43073 3.44872 4.13466 4.25847 4.41143 4.45575 4.57217 4.66021 4.69913 4.87162 5.09294 5.13611 5.29740 5.35158 5.49643 5.52033 5.57115 5.70843 5.76578 5.88770 5.95951 6.01405 6.11062 6.27988 6.36330 6.46652 6.50408 6.68039 6.81282 7.10255 7.19898 7.26220 7.47233 7.51659 7.67991 7.77323 8.10976 8.32932 9.14498 9.77191 10.35059 11.26028 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.002322 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.580473 B =12056.334890 C =12461.502810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.493 5.493 3 C 0.207 3.793 4 C -0.249 4.249 5 C 0.573 3.427 6 O -0.552 6.552 7 N -0.714 5.714 8 C 0.159 3.841 9 C -0.168 4.168 10 C -0.122 4.122 11 C 0.192 3.808 12 N -0.595 5.595 13 C -0.245 4.245 14 H 0.070 0.930 15 C -0.002 4.002 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.143 3.857 22 C -0.090 4.090 23 C 0.004 3.996 24 C -0.242 4.242 25 C 0.514 3.486 26 O -0.545 6.545 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.141 0.859 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 -5.165 3.510 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.200 5.200 3 C 0.074 3.926 4 C -0.257 4.257 5 C 0.360 3.640 6 O -0.432 6.432 7 N -0.365 5.365 8 C 0.036 3.964 9 C -0.169 4.169 10 C -0.143 4.143 11 C 0.067 3.933 12 N -0.318 5.318 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.016 3.984 22 C -0.129 4.129 23 C -0.017 4.017 24 C -0.264 4.264 25 C 0.317 3.683 26 O -0.427 6.427 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.197 0.803 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.159 0.841 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.824 -5.100 3.378 22.665 hybrid contribution 1.044 0.340 -0.107 1.103 sum -20.780 -4.760 3.272 21.567 Atomic orbital electron populations 1.22349 0.76472 1.06721 1.03852 1.45191 1.09947 1.06839 1.58064 1.22257 0.92988 0.89976 0.87410 1.19479 0.92480 0.94556 1.19207 1.17613 0.82303 0.87668 0.76377 1.90782 1.67497 1.33429 1.51493 1.46043 1.05529 1.10543 1.74355 1.20486 0.89469 0.84347 1.02062 1.20490 0.92660 1.07518 0.96254 1.23304 0.99957 0.94870 0.96126 1.19799 0.84583 1.00575 0.88301 1.44172 1.21380 1.61868 1.04409 1.19223 0.93228 1.29346 0.95641 0.91258 1.24993 0.97835 0.99716 0.97423 1.70011 1.39179 1.41230 1.05083 0.86181 0.81896 0.80911 0.77555 1.20293 1.21741 1.21574 1.20961 0.91194 0.93687 0.92516 1.20757 0.97773 1.00835 0.93563 1.21549 1.00857 0.90965 0.88373 1.22011 0.92183 1.00288 1.11897 1.17325 0.89603 0.82628 0.78764 1.90939 1.69487 1.29956 1.52273 0.87488 0.89707 0.89690 0.80347 0.76375 0.91353 0.91436 0.88720 0.94032 0.88793 0.93625 0.92436 0.95935 0.91704 0.92858 0.84106 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.24 10.55 59.85 0.63 0.87 16 2 N -0.49 -4.01 2.95 -126.73 -0.37 -4.38 16 3 C 0.21 1.62 9.92 -16.43 -0.16 1.46 16 4 C -0.25 -2.32 5.88 -104.95 -0.62 -2.94 16 5 C 0.57 6.81 7.76 -12.51 -0.10 6.71 16 6 O -0.55 -8.19 16.32 5.27 0.09 -8.10 16 7 N -0.71 -8.25 5.50 -62.56 -0.34 -8.59 16 8 C 0.16 2.16 5.66 -5.19 -0.03 2.13 16 9 C -0.17 -2.67 5.22 -100.99 -0.53 -3.19 16 10 C -0.12 -2.17 9.47 -35.78 -0.34 -2.50 16 11 C 0.19 4.34 5.25 -5.03 -0.03 4.32 16 12 N -0.60 -14.27 3.01 -173.56 -0.52 -14.79 16 13 C -0.25 -6.52 9.71 -15.06 -0.15 -6.67 16 14 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 15 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 16 N -0.91 -25.58 11.07 55.49 0.61 -24.96 16 17 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.14 2.79 6.57 -3.53 -0.02 2.76 16 22 C -0.09 -1.46 5.95 -28.18 -0.17 -1.63 16 23 C 0.00 0.03 9.57 -39.12 -0.37 -0.34 16 24 C -0.24 -2.25 9.97 -39.44 -0.39 -2.64 16 25 C 0.51 5.60 7.40 -15.41 -0.11 5.48 16 26 O -0.54 -7.63 16.33 4.95 0.08 -7.55 16 27 H 0.11 0.68 6.83 -51.93 -0.35 0.33 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.18 1.08 7.59 -52.48 -0.40 0.68 16 31 H 0.40 3.97 6.53 -40.82 -0.27 3.70 16 32 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 34 H 0.09 1.51 7.73 -52.49 -0.41 1.10 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 2.39 6.39 -51.93 -0.33 2.06 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.06 1.10 7.96 -51.92 -0.41 0.69 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.14 0.90 6.48 -52.49 -0.34 0.56 16 43 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -33.32 358.47 -8.40 -41.73 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.84 Total: 1.31 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.47 Total: 3.67 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.63 Total: -52.73 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.17 Total: -15.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.32 -8.40 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000893783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds