Wall clock time and date at job start Tue Mar 31 2020 11:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34599 * 119.47925 * 2 1 4 4 C 1.38000 * 120.45856 * 180.30140 * 3 2 1 5 5 C 1.47454 * 120.25319 * 179.69351 * 4 3 2 6 6 O 1.21605 * 120.00709 * 359.72951 * 5 4 3 7 7 N 1.34779 * 119.99460 * 179.72824 * 5 4 3 8 8 C 1.46498 * 119.99823 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47252 * 180.02562 * 8 7 5 10 10 C 1.29451 * 117.69445 * 94.99944 * 9 8 7 11 11 C 1.50330 * 123.65007 * 181.14193 * 10 9 8 12 12 N 1.47132 * 109.10280 * 348.53955 * 11 10 9 13 13 C 1.36936 * 121.53492 * 223.15848 * 12 11 10 14 14 H 1.07997 * 120.00400 * 156.23953 * 13 12 11 15 15 C 1.38816 * 119.99772 * 336.23726 * 13 12 11 16 16 N 1.31620 * 119.99998 * 344.47294 * 15 13 12 17 17 Si 1.86801 * 119.99831 * 164.47294 * 15 13 12 18 18 H 1.48498 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47086 * 119.99888 * 17 15 13 20 20 H 1.48500 * 109.46988 * 240.00040 * 17 15 13 21 21 C 1.47334 * 117.08742 * 43.37930 * 12 11 10 22 22 C 1.49968 * 117.69162 * 275.02088 * 9 8 7 23 23 C 1.41590 * 119.48297 * 359.42348 * 4 3 2 24 24 C 1.35966 * 119.01314 * 0.27479 * 23 4 3 25 25 C 1.34537 * 119.48050 * 179.69819 * 2 1 3 26 26 O 1.21970 * 119.74443 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.47461 * 180.29967 * 1 2 3 28 28 H 1.09004 * 109.47281 * 300.30384 * 1 2 3 29 29 H 1.09008 * 109.47085 * 60.30117 * 1 2 3 30 30 H 1.08004 * 119.77033 * 0.02907 * 3 2 1 31 31 H 0.97004 * 120.00195 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47380 * 60.00218 * 8 7 5 33 33 H 1.08996 * 109.47181 * 299.99959 * 8 7 5 34 34 H 1.07993 * 118.17889 * 0.85731 * 10 9 8 35 35 H 1.08999 * 109.52397 * 108.64692 * 11 10 9 36 36 H 1.09002 * 109.52075 * 228.83522 * 11 10 9 37 37 H 0.97003 * 119.99843 * 179.97438 * 16 15 13 38 38 H 1.09008 * 109.77605 * 178.39713 * 21 12 11 39 39 H 1.09005 * 109.78096 * 57.59157 * 21 12 11 40 40 H 1.08993 * 109.31804 * 281.28826 * 22 9 8 41 41 H 1.09003 * 109.31610 * 40.71757 * 22 9 8 42 42 H 1.07998 * 120.49125 * 180.29057 * 23 4 3 43 43 H 1.08005 * 120.25116 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5071 1.1953 -0.0063 5 6 4.2281 2.4816 -0.0130 6 8 3.6069 3.5269 -0.0181 7 7 5.5758 2.4985 -0.0136 8 6 6.2922 3.7764 -0.0198 9 6 7.7772 3.5198 -0.0198 10 6 8.3862 3.5107 -1.1620 11 6 9.8573 3.2444 -1.3196 12 7 10.4977 3.2800 0.0046 13 6 11.6953 3.9133 0.2041 14 1 11.9629 4.2644 1.1897 15 6 12.5655 4.1038 -0.8605 16 7 12.3984 3.4263 -1.9765 17 14 13.9737 5.3219 -0.7093 18 1 13.9424 5.9502 0.6359 19 1 15.2646 4.6116 -0.8944 20 1 13.8332 6.3725 -1.7492 21 6 9.7965 2.5998 1.1074 22 6 8.4452 3.2924 1.3036 23 6 4.2250 -0.0251 -0.0003 24 6 3.5345 -1.1963 0.0058 25 6 2.1271 -1.1712 0.0062 26 8 1.5030 -2.2191 0.0112 27 1 -0.3634 -1.0276 0.0054 28 1 -0.3634 0.5186 0.8873 29 1 -0.3634 0.5092 -0.8927 30 1 1.5751 2.0999 0.0005 31 1 6.0714 1.6647 -0.0099 32 1 6.0221 4.3487 0.8676 33 1 6.0214 4.3404 -0.9123 34 1 7.8043 3.7007 -2.0517 35 1 10.0035 2.2638 -1.7725 36 1 10.3000 4.0104 -1.9564 37 1 13.0063 3.5597 -2.7205 38 1 10.3858 2.6753 2.0214 39 1 9.6401 1.5512 0.8541 40 1 8.5999 4.2510 1.7988 41 1 7.8065 2.6667 1.9271 42 1 5.3050 -0.0256 -0.0003 43 1 4.0618 -2.1389 0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000893783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:59 Heat of formation + Delta-G solvation = -14.233472 kcal Electronic energy + Delta-G solvation = -25546.795677 eV Core-core repulsion = 21785.718404 eV Total energy + Delta-G solvation = -3761.077273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59014 -40.71970 -39.30761 -38.00094 -36.40416 -35.80504 -34.43625 -32.60817 -31.43832 -31.16378 -29.09524 -28.27659 -26.21235 -24.96093 -24.30362 -24.17547 -22.81905 -21.75892 -19.65796 -19.30876 -18.60788 -17.93377 -17.37566 -17.24456 -17.04789 -16.76919 -16.68628 -16.15802 -15.73229 -15.36268 -15.30644 -15.19054 -14.86588 -14.42559 -14.35362 -14.22095 -13.93005 -13.60765 -13.49561 -13.23760 -13.09959 -12.91931 -12.78872 -12.64989 -12.58735 -12.18027 -12.06113 -11.67866 -11.30430 -11.24253 -11.21547 -11.09339 -10.68013 -10.10157 -9.62087 -9.14586 -8.73258 -7.87277 -5.27791 -0.27815 0.21366 1.18536 1.46989 1.48734 1.49522 1.59123 1.90013 2.44560 2.52264 2.64900 3.30163 3.53100 3.62499 3.65299 3.77859 3.78875 3.92943 4.02245 4.07713 4.38231 4.39672 4.49696 4.57800 4.69289 4.75097 4.79615 4.87061 4.89997 4.92472 4.97141 5.03861 5.14360 5.25017 5.29772 5.39670 5.45566 5.52208 5.63562 5.80123 5.81583 6.20868 6.35641 6.55807 6.75782 7.15238 7.20208 7.85606 8.38960 9.21286 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.002322 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.580473 B =12056.334890 C =12461.502810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.487 5.487 3 C 0.224 3.776 4 C -0.262 4.262 5 C 0.579 3.421 6 O -0.582 6.582 7 N -0.709 5.709 8 C 0.169 3.831 9 C -0.139 4.139 10 C -0.141 4.141 11 C 0.203 3.797 12 N -0.616 5.616 13 C -0.253 4.253 14 H 0.070 0.930 15 C -0.055 4.055 16 N -0.939 5.939 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.292 1.292 21 C 0.137 3.863 22 C -0.084 4.084 23 C 0.020 3.980 24 C -0.259 4.259 25 C 0.503 3.497 26 O -0.587 6.587 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.202 0.798 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.015 0.985 36 H 0.056 0.944 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.161 0.839 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.745 -4.403 4.770 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.193 5.193 3 C 0.090 3.910 4 C -0.270 4.270 5 C 0.368 3.632 6 O -0.464 6.464 7 N -0.360 5.360 8 C 0.046 3.954 9 C -0.140 4.140 10 C -0.162 4.162 11 C 0.078 3.922 12 N -0.340 5.340 13 C -0.383 4.383 14 H 0.088 0.912 15 C -0.250 4.250 16 N -0.586 5.586 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.219 1.219 21 C 0.012 3.988 22 C -0.123 4.123 23 C -0.002 4.002 24 C -0.281 4.281 25 C 0.307 3.693 26 O -0.473 6.473 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.219 0.781 31 H 0.248 0.752 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.179 0.821 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.518 -4.346 4.667 24.368 hybrid contribution 1.486 0.104 -0.421 1.548 sum -22.032 -4.242 4.246 22.835 Atomic orbital electron populations 1.22624 0.74526 1.06462 1.06345 1.45278 1.11258 1.06247 1.56503 1.22564 0.92801 0.90375 0.85234 1.19332 0.93067 0.93659 1.20918 1.17790 0.82051 0.87971 0.75420 1.90776 1.67996 1.34634 1.52958 1.45866 1.05620 1.10210 1.74309 1.20250 0.87534 0.85288 1.02312 1.20611 0.93954 1.04129 0.95296 1.22946 0.97141 0.98092 0.97977 1.19443 0.87464 0.98059 0.87256 1.44460 1.21223 1.62444 1.05847 1.19537 0.94138 1.29015 0.95612 0.91198 1.25715 1.00390 1.01507 0.97399 1.70165 1.40106 1.42732 1.05634 0.85223 0.78947 0.78714 0.77689 1.19150 1.22047 1.21896 1.21165 0.92541 0.94067 0.91064 1.20697 0.96342 1.01039 0.94226 1.21674 1.01769 0.90081 0.86658 1.22045 0.91715 1.01039 1.13269 1.17620 0.90247 0.82814 0.78578 1.90915 1.70333 1.31435 1.54596 0.89108 0.87172 0.87278 0.78092 0.75224 0.90839 0.91619 0.86827 0.96758 0.92606 0.94179 0.92429 0.95293 0.91869 0.89135 0.82137 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.55 127.77 1.35 1.66 16 2 N -0.49 -6.91 2.95 -673.08 -1.99 -8.90 16 3 C 0.22 2.85 9.92 84.21 0.84 3.69 16 4 C -0.26 -4.13 5.88 -20.08 -0.12 -4.25 16 5 C 0.58 11.95 7.76 86.67 0.67 12.62 16 6 O -0.58 -15.56 16.32 -4.05 -0.07 -15.62 16 7 N -0.71 -13.99 5.50 -470.08 -2.59 -16.58 16 8 C 0.17 4.06 5.66 85.63 0.48 4.54 16 9 C -0.14 -4.06 5.22 -15.13 -0.08 -4.14 16 10 C -0.14 -4.89 9.47 27.11 0.26 -4.63 16 11 C 0.20 9.38 5.25 85.40 0.45 9.83 16 12 N -0.62 -29.69 3.01 -703.04 -2.12 -31.81 16 13 C -0.25 -13.58 9.71 84.03 0.82 -12.76 16 14 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 15 C -0.06 -3.05 5.01 84.86 0.43 -2.62 16 16 N -0.94 -54.52 11.07 21.65 0.24 -54.28 16 17 Si 0.97 44.39 29.58 68.60 2.03 46.41 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 C 0.14 5.15 6.57 86.26 0.57 5.72 16 22 C -0.08 -2.48 5.95 29.65 0.18 -2.31 16 23 C 0.02 0.28 9.57 22.57 0.22 0.49 16 24 C -0.26 -4.48 9.97 22.36 0.22 -4.26 16 25 C 0.50 10.50 7.40 84.90 0.63 11.13 16 26 O -0.59 -16.56 16.33 -5.22 -0.09 -16.65 16 27 H 0.09 1.09 6.83 -2.39 -0.02 1.07 16 28 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.20 1.67 7.59 -2.91 -0.02 1.65 16 31 H 0.41 6.63 6.53 -92.71 -0.61 6.02 16 32 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 33 H 0.07 1.66 7.78 -2.39 -0.02 1.64 16 34 H 0.11 3.48 7.73 -2.91 -0.02 3.46 16 35 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 2.97 6.39 -2.39 -0.02 2.96 16 37 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.06 2.13 7.96 -2.38 -0.02 2.11 16 39 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.16 1.55 6.48 -2.91 -0.02 1.53 16 43 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -74.02 358.47 2.76 -71.26 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.43 Total: 11.43 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.90 Total: 14.72 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -6.45 Total: -111.56 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.15 Total: -32.27 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -74.02 2.76 -71.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000893783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.030 kcal (2) G-P(sol) polarization free energy of solvation -74.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds