Wall clock time and date at job start Tue Mar 31 2020 11:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35498 * 117.00260 * 2 1 4 4 C 1.39165 * 119.52875 * 179.97438 * 3 2 1 5 5 C 1.37953 * 119.26344 * 179.97438 * 4 3 2 6 6 C 1.40281 * 118.35595 * 0.02562 * 5 4 3 7 7 C 1.47622 * 120.49401 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00216 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00050 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47477 * 179.97438 * 10 9 7 12 12 C 1.29451 * 117.69288 * 94.99671 * 11 10 9 13 13 C 1.50319 * 123.65529 * 181.13868 * 12 11 10 14 14 N 1.47132 * 109.10018 * 348.55136 * 13 12 11 15 15 C 1.36940 * 121.53393 * 223.15538 * 14 13 12 16 16 H 1.07991 * 120.00464 * 156.23153 * 15 14 13 17 17 C 1.38816 * 119.99712 * 336.23276 * 15 14 13 18 18 N 1.31620 * 119.99998 * 344.47735 * 17 15 14 19 19 Si 1.86801 * 119.99831 * 164.47736 * 17 15 14 20 20 H 1.48492 * 109.47175 * 90.00094 * 19 17 15 21 21 H 1.48504 * 109.46897 * 209.99863 * 19 17 15 22 22 H 1.48499 * 109.47160 * 329.99876 * 19 17 15 23 23 C 1.47337 * 117.09112 * 43.37218 * 14 13 12 24 24 C 1.49968 * 117.69436 * 275.02765 * 11 10 9 25 25 C 1.39518 * 119.00779 * 0.27542 * 6 5 4 26 26 N 1.31669 * 120.62600 * 359.42370 * 25 6 5 27 27 H 1.09010 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47160 * 300.00185 * 1 2 3 29 29 H 1.09001 * 109.46843 * 60.00685 * 1 2 3 30 30 H 1.08005 * 120.36844 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.81755 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99771 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.46828 * 60.00377 * 10 9 7 34 34 H 1.08996 * 109.47550 * 300.00145 * 10 9 7 35 35 H 1.08004 * 118.17123 * 0.87021 * 12 11 10 36 36 H 1.09005 * 109.52227 * 108.64796 * 13 12 11 37 37 H 1.08988 * 109.52770 * 228.84266 * 13 12 11 38 38 H 0.97003 * 119.99843 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.78002 * 178.39736 * 23 14 13 40 40 H 1.09002 * 109.77673 * 57.59735 * 23 14 13 41 41 H 1.08996 * 109.31096 * 281.28435 * 24 11 10 42 42 H 1.08994 * 109.31663 * 40.71532 * 24 11 10 43 43 H 1.07994 * 119.68848 * 179.72665 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5006 0.0000 6 6 3.2524 3.6511 -0.0005 7 6 3.8669 4.9933 -0.0006 8 8 5.0773 5.1078 -0.0006 9 7 3.0861 6.0919 -0.0005 10 6 3.6959 7.4239 0.0000 11 6 2.6131 8.4721 -0.0007 12 6 2.2494 8.9622 1.1409 13 6 1.1675 9.9939 1.2980 14 7 0.8155 10.5280 -0.0270 15 6 0.6204 11.8681 -0.2303 16 1 0.7439 12.2881 -1.2175 17 6 0.2638 12.6866 0.8326 18 7 -0.1821 12.1557 1.9513 19 14 0.4170 14.5417 0.6751 20 1 -0.8520 15.0997 0.1429 21 1 0.6954 15.1304 2.0098 22 1 1.5294 14.8696 -0.2524 23 6 0.6768 9.5571 -1.1266 24 6 2.0324 8.8734 -1.3239 25 6 1.8646 3.5077 0.0054 26 7 1.3138 2.3117 0.0000 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0211 0.3617 0.0005 31 1 5.1324 2.5775 0.0000 32 1 2.1204 6.0005 -0.0001 33 1 4.3145 7.5406 -0.8898 34 1 4.3140 7.5402 0.8902 35 1 2.7483 8.6070 2.0305 36 1 0.2903 9.5353 1.7544 37 1 1.5267 10.8050 1.9312 38 1 -0.4309 12.7277 2.6942 39 1 0.3881 10.0746 -2.0414 40 1 -0.0774 8.8135 -0.8690 41 1 2.7142 9.5620 -1.8229 42 1 1.9020 7.9867 -1.9442 43 1 1.2362 4.3859 0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000923719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:11 Heat of formation + Delta-G solvation = 6.442265 kcal Electronic energy + Delta-G solvation = -25404.033797 eV Core-core repulsion = 21643.853092 eV Total energy + Delta-G solvation = -3760.180706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15789 -39.68216 -38.13714 -37.63806 -35.06096 -33.08473 -32.87765 -31.53007 -30.67131 -29.74067 -27.91482 -26.84994 -24.74263 -24.10362 -23.26920 -22.73734 -21.17945 -20.82856 -18.91455 -18.19163 -17.59466 -17.52751 -16.44325 -15.81030 -15.74641 -15.37771 -15.18741 -14.96951 -14.62769 -14.42280 -13.91232 -13.86665 -13.61487 -13.52250 -13.32581 -13.09244 -12.95578 -12.30343 -12.25243 -12.08915 -11.60668 -11.57816 -11.39685 -10.95179 -10.75371 -10.51702 -10.38749 -10.35171 -10.31632 -9.88109 -9.86455 -9.63896 -9.15397 -8.85977 -8.71935 -8.11402 -6.78992 -5.83555 -3.22102 0.39651 0.81896 2.50980 2.64323 2.69012 3.35803 3.41714 3.43020 3.45369 3.54112 3.80216 4.42664 4.46514 4.51435 4.67242 4.75826 4.92784 4.95506 5.08833 5.21368 5.24530 5.30952 5.36284 5.42597 5.53483 5.72709 5.78054 5.90978 5.92625 6.02733 6.12337 6.29248 6.36604 6.47636 6.69137 6.74505 6.82497 7.11391 7.20979 7.27201 7.34066 7.47367 7.68751 7.78100 8.11479 8.33990 9.15448 9.78240 10.36217 11.27017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002382 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.525876 B =11752.651617 C =12442.055574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.305 6.305 3 C 0.339 3.661 4 C -0.198 4.198 5 C 0.016 3.984 6 C -0.224 4.224 7 C 0.564 3.436 8 O -0.543 6.543 9 N -0.715 5.715 10 C 0.158 3.842 11 C -0.168 4.168 12 C -0.122 4.122 13 C 0.193 3.807 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.910 5.910 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.143 3.857 24 C -0.090 4.090 25 C 0.181 3.819 26 N -0.542 5.542 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.400 0.600 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.094 0.906 38 H 0.254 0.746 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -22.360 -3.395 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.211 6.211 3 C 0.161 3.839 4 C -0.218 4.218 5 C -0.009 4.009 6 C -0.229 4.229 7 C 0.351 3.649 8 O -0.421 6.421 9 N -0.366 5.366 10 C 0.036 3.964 11 C -0.169 4.169 12 C -0.143 4.143 13 C 0.068 3.932 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.129 4.129 25 C 0.023 3.977 26 N -0.265 5.265 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.803 -22.506 -3.259 23.056 hybrid contribution 0.192 1.089 0.091 1.110 sum 3.995 -21.417 -3.168 22.015 Atomic orbital electron populations 1.22946 0.76654 1.03248 1.02920 1.86214 1.23434 1.24462 1.86973 1.20120 0.89530 0.84785 0.89504 1.21054 0.91819 0.99648 1.09296 1.21535 1.01342 0.89659 0.88391 1.20869 0.95013 0.94975 1.12075 1.17899 0.86650 0.83746 0.76649 1.90777 1.13794 1.87039 1.50522 1.46118 1.10241 1.05884 1.74340 1.20497 0.94505 0.79331 1.02101 1.20490 1.00255 0.99880 0.96278 1.23307 0.97596 0.97241 0.96124 1.19793 0.91781 0.93378 0.88271 1.44162 1.80432 1.02696 1.04524 1.19168 1.40263 0.82540 0.95541 0.91338 1.24988 0.99241 0.98314 0.97383 1.70001 1.46500 1.34016 1.05002 0.86259 0.77932 0.85434 0.76948 1.21425 1.21552 1.20523 1.20957 0.92720 0.92107 0.92554 1.20757 0.99519 0.99097 0.93564 1.22683 0.91639 0.94020 0.89380 1.67341 1.40497 0.98612 1.20089 0.88391 0.91914 0.91926 0.83338 0.82739 0.76461 0.91326 0.91398 0.88718 0.94036 0.88793 0.93579 0.92437 0.95930 0.91691 0.92866 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.37 101.05 1.05 1.30 16 2 O -0.30 -2.82 10.46 -18.19 -0.19 -3.01 16 3 C 0.34 3.44 7.49 -16.96 -0.13 3.31 16 4 C -0.20 -1.74 10.02 -39.34 -0.39 -2.14 16 5 C 0.02 0.16 9.70 -38.92 -0.38 -0.22 16 6 C -0.22 -2.43 5.89 -104.82 -0.62 -3.05 16 7 C 0.56 7.42 7.77 -12.43 -0.10 7.32 16 8 O -0.54 -8.89 16.41 5.30 0.09 -8.80 16 9 N -0.71 -8.81 5.50 -62.50 -0.34 -9.16 16 10 C 0.16 2.25 5.66 -5.19 -0.03 2.22 16 11 C -0.17 -2.74 5.22 -100.99 -0.53 -3.27 16 12 C -0.12 -2.21 9.47 -35.78 -0.34 -2.55 16 13 C 0.19 4.40 5.25 -5.03 -0.03 4.38 16 14 N -0.59 -14.43 3.01 -173.58 -0.52 -14.95 16 15 C -0.25 -6.60 9.71 -15.06 -0.15 -6.74 16 16 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 17 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 18 N -0.91 -25.74 11.07 55.49 0.61 -25.12 16 19 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.14 2.83 6.57 -3.53 -0.02 2.81 16 24 C -0.09 -1.50 5.95 -28.18 -0.17 -1.66 16 25 C 0.18 1.80 10.71 -17.14 -0.18 1.61 16 26 N -0.54 -5.76 9.18 -12.97 -0.12 -5.88 16 27 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.15 1.36 7.73 -52.49 -0.41 0.96 16 32 H 0.40 4.20 6.52 -40.82 -0.27 3.94 16 33 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.07 1.00 7.78 -51.93 -0.40 0.60 16 35 H 0.09 1.54 7.73 -52.48 -0.41 1.14 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 2.42 6.39 -51.94 -0.33 2.08 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.17 1.30 6.41 -52.49 -0.34 0.96 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -31.72 361.13 -8.07 -39.79 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.91 Total: 2.12 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.10 Total: 3.19 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.37 Total: -55.11 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.10 Total: -11.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.72 -8.07 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000923719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.228 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds