Wall clock time and date at job start Tue Mar 31 2020 11:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35498 * 117.00260 * 2 1 4 4 C 1.39165 * 119.52875 * 179.97438 * 3 2 1 5 5 C 1.37953 * 119.26344 * 179.97438 * 4 3 2 6 6 C 1.40281 * 118.35595 * 0.02562 * 5 4 3 7 7 C 1.47622 * 120.49401 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00216 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00050 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47477 * 179.97438 * 10 9 7 12 12 C 1.29451 * 117.69288 * 94.99671 * 11 10 9 13 13 C 1.50319 * 123.65529 * 181.13868 * 12 11 10 14 14 N 1.47132 * 109.10018 * 348.55136 * 13 12 11 15 15 C 1.36940 * 121.53393 * 223.15538 * 14 13 12 16 16 H 1.07991 * 120.00464 * 156.23153 * 15 14 13 17 17 C 1.38816 * 119.99712 * 336.23276 * 15 14 13 18 18 N 1.31620 * 119.99998 * 344.47735 * 17 15 14 19 19 Si 1.86801 * 119.99831 * 164.47736 * 17 15 14 20 20 H 1.48492 * 109.47175 * 90.00094 * 19 17 15 21 21 H 1.48504 * 109.46897 * 209.99863 * 19 17 15 22 22 H 1.48499 * 109.47160 * 329.99876 * 19 17 15 23 23 C 1.47337 * 117.09112 * 43.37218 * 14 13 12 24 24 C 1.49968 * 117.69436 * 275.02765 * 11 10 9 25 25 C 1.39518 * 119.00779 * 0.27542 * 6 5 4 26 26 N 1.31669 * 120.62600 * 359.42370 * 25 6 5 27 27 H 1.09010 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47160 * 300.00185 * 1 2 3 29 29 H 1.09001 * 109.46843 * 60.00685 * 1 2 3 30 30 H 1.08005 * 120.36844 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.81755 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99771 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.46828 * 60.00377 * 10 9 7 34 34 H 1.08996 * 109.47550 * 300.00145 * 10 9 7 35 35 H 1.08004 * 118.17123 * 0.87021 * 12 11 10 36 36 H 1.09005 * 109.52227 * 108.64796 * 13 12 11 37 37 H 1.08988 * 109.52770 * 228.84266 * 13 12 11 38 38 H 0.97003 * 119.99843 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.78002 * 178.39736 * 23 14 13 40 40 H 1.09002 * 109.77673 * 57.59735 * 23 14 13 41 41 H 1.08996 * 109.31096 * 281.28435 * 24 11 10 42 42 H 1.08994 * 109.31663 * 40.71532 * 24 11 10 43 43 H 1.07994 * 119.68848 * 179.72665 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5006 0.0000 6 6 3.2524 3.6511 -0.0005 7 6 3.8669 4.9933 -0.0006 8 8 5.0773 5.1078 -0.0006 9 7 3.0861 6.0919 -0.0005 10 6 3.6959 7.4239 0.0000 11 6 2.6131 8.4721 -0.0007 12 6 2.2494 8.9622 1.1409 13 6 1.1675 9.9939 1.2980 14 7 0.8155 10.5280 -0.0270 15 6 0.6204 11.8681 -0.2303 16 1 0.7439 12.2881 -1.2175 17 6 0.2638 12.6866 0.8326 18 7 -0.1821 12.1557 1.9513 19 14 0.4170 14.5417 0.6751 20 1 -0.8520 15.0997 0.1429 21 1 0.6954 15.1304 2.0098 22 1 1.5294 14.8696 -0.2524 23 6 0.6768 9.5571 -1.1266 24 6 2.0324 8.8734 -1.3239 25 6 1.8646 3.5077 0.0054 26 7 1.3138 2.3117 0.0000 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0211 0.3617 0.0005 31 1 5.1324 2.5775 0.0000 32 1 2.1204 6.0005 -0.0001 33 1 4.3145 7.5406 -0.8898 34 1 4.3140 7.5402 0.8902 35 1 2.7483 8.6070 2.0305 36 1 0.2903 9.5353 1.7544 37 1 1.5267 10.8050 1.9312 38 1 -0.4309 12.7277 2.6942 39 1 0.3881 10.0746 -2.0414 40 1 -0.0774 8.8135 -0.8690 41 1 2.7142 9.5620 -1.8229 42 1 1.9020 7.9867 -1.9442 43 1 1.2362 4.3859 0.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000923719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:10 Heat of formation + Delta-G solvation = -15.409578 kcal Electronic energy + Delta-G solvation = -25404.981365 eV Core-core repulsion = 21643.853092 eV Total energy + Delta-G solvation = -3761.128273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93531 -40.66829 -39.37839 -38.66274 -36.45631 -34.62676 -33.64937 -32.88137 -31.87639 -31.35765 -28.82902 -28.08237 -26.10795 -25.10418 -24.42459 -24.03966 -22.79435 -21.82149 -19.69507 -19.48447 -19.00833 -18.30107 -17.38006 -17.12058 -17.00619 -16.76219 -16.29076 -16.05250 -15.73486 -15.43492 -15.28240 -15.14723 -15.01588 -14.61463 -14.29841 -14.19067 -13.92294 -13.85992 -13.58819 -13.25886 -12.90786 -12.78811 -12.78049 -12.57393 -12.24516 -12.21172 -12.10126 -11.69512 -11.43321 -11.21696 -11.09875 -10.74040 -10.67223 -10.20115 -9.64807 -9.64254 -8.74190 -7.88025 -5.28540 -0.39817 0.10282 1.17485 1.47081 1.49038 1.58071 1.76240 1.99948 2.33385 2.51781 2.73169 3.10659 3.29495 3.62011 3.63896 3.77188 3.85772 3.97021 3.99178 4.04468 4.43655 4.43802 4.46103 4.55261 4.57264 4.63199 4.70363 4.76607 4.80276 4.85657 4.93643 5.02873 5.12117 5.21819 5.23484 5.32722 5.42160 5.50060 5.62337 5.78280 6.06589 6.17868 6.34677 6.46677 6.60739 7.11578 7.14276 7.84486 8.38128 9.20555 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002382 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.525876 B =11752.651617 C =12442.055574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.311 6.311 3 C 0.330 3.670 4 C -0.192 4.192 5 C 0.015 3.985 6 C -0.235 4.235 7 C 0.569 3.431 8 O -0.578 6.578 9 N -0.707 5.707 10 C 0.168 3.832 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.203 3.797 14 N -0.615 5.615 15 C -0.255 4.255 16 H 0.070 0.930 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.966 3.034 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.272 1.272 23 C 0.138 3.862 24 C -0.085 4.085 25 C 0.183 3.817 26 N -0.555 5.555 27 H 0.125 0.875 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.411 0.589 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.015 0.985 37 H 0.057 0.943 38 H 0.249 0.751 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -24.040 -4.610 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.151 3.849 4 C -0.213 4.213 5 C -0.010 4.010 6 C -0.241 4.241 7 C 0.357 3.643 8 O -0.459 6.459 9 N -0.358 5.358 10 C 0.045 3.955 11 C -0.140 4.140 12 C -0.161 4.161 13 C 0.078 3.922 14 N -0.339 5.339 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.795 3.205 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.197 1.197 23 C 0.012 3.988 24 C -0.123 4.123 25 C 0.025 3.975 26 N -0.279 5.279 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.190 0.810 31 H 0.179 0.821 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.360 -24.218 -4.502 25.016 hybrid contribution -0.041 1.491 0.393 1.542 sum 4.319 -22.727 -4.109 23.496 Atomic orbital electron populations 1.23145 0.75419 1.04989 1.02580 1.86215 1.24697 1.24076 1.86708 1.20425 0.90190 0.84984 0.89254 1.21277 0.91560 1.00211 1.08205 1.21683 1.01717 0.89673 0.87975 1.20727 0.95513 0.94033 1.13808 1.18128 0.86134 0.84415 0.75623 1.90762 1.15294 1.87540 1.52276 1.45934 1.10793 1.05042 1.74061 1.20277 0.93495 0.79436 1.02296 1.20594 0.99179 0.98847 0.95416 1.22962 0.97824 0.97358 0.97911 1.19439 0.92267 0.93187 0.87273 1.44448 1.80765 1.02814 1.05919 1.19498 1.39287 0.84172 0.95578 0.91210 1.25719 0.99695 1.02198 0.97330 1.70159 1.47865 1.35037 1.05546 0.85288 0.77935 0.80741 0.76575 1.21147 1.22018 1.19726 1.21154 0.94860 0.91583 0.91172 1.20698 0.97295 1.00184 0.94142 1.22910 0.91465 0.94466 0.88629 1.67375 1.40891 0.98936 1.20697 0.85700 0.92296 0.92176 0.81006 0.82101 0.75206 0.90892 0.91627 0.86864 0.96687 0.92509 0.94147 0.92344 0.95292 0.91839 0.89244 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.37 113.37 1.18 1.56 16 2 O -0.31 -5.17 10.46 -87.99 -0.92 -6.09 16 3 C 0.33 6.08 7.49 84.83 0.64 6.71 16 4 C -0.19 -2.98 10.02 22.42 0.22 -2.76 16 5 C 0.01 0.26 9.70 22.70 0.22 0.48 16 6 C -0.23 -4.69 5.89 -19.99 -0.12 -4.81 16 7 C 0.57 13.90 7.77 86.72 0.67 14.58 16 8 O -0.58 -18.09 16.41 -3.96 -0.06 -18.16 16 9 N -0.71 -15.71 5.50 -469.93 -2.59 -18.29 16 10 C 0.17 4.37 5.66 85.64 0.48 4.85 16 11 C -0.14 -4.27 5.22 -15.13 -0.08 -4.34 16 12 C -0.14 -5.01 9.47 27.11 0.26 -4.75 16 13 C 0.20 9.56 5.25 85.39 0.45 10.01 16 14 N -0.62 -30.09 3.01 -703.09 -2.12 -32.21 16 15 C -0.26 -13.84 9.71 84.03 0.82 -13.03 16 16 H 0.07 3.67 7.88 -2.92 -0.02 3.65 16 17 C -0.05 -3.03 5.01 84.86 0.43 -2.60 16 18 N -0.94 -54.83 11.07 21.65 0.24 -54.59 16 19 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.14 5.29 6.57 86.25 0.57 5.85 16 24 C -0.08 -2.59 5.95 29.65 0.18 -2.41 16 25 C 0.18 3.29 10.71 85.03 0.91 4.20 16 26 N -0.56 -10.84 9.18 -307.82 -2.83 -13.67 16 27 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.16 2.58 7.73 -2.91 -0.02 2.56 16 32 H 0.41 7.48 6.52 -92.71 -0.60 6.88 16 33 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 34 H 0.07 1.80 7.78 -2.39 -0.02 1.78 16 35 H 0.11 3.60 7.73 -2.91 -0.02 3.58 16 36 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 3.06 6.39 -2.39 -0.02 3.04 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.06 2.20 7.96 -2.39 -0.02 2.18 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.18 2.43 6.41 -2.91 -0.02 2.41 16 Total: -1.00 -69.18 361.13 1.00 -68.17 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.43 Total: 14.61 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 6.82 Total: 13.54 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -7.29 Total: -118.76 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.99 Total: -24.25 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.18 1.00 -68.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000923719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.765 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds