Wall clock time and date at job start Tue Mar 31 2020 11:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35587 * 118.80291 * 2 1 4 4 C 1.34863 * 121.79541 * 179.72428 * 3 2 1 5 5 C 1.41673 * 119.34269 * 359.97438 * 4 3 2 6 6 O 1.22085 * 121.06495 * 179.97438 * 5 4 3 7 7 C 1.47095 * 117.86013 * 0.02562 * 5 4 3 8 8 C 1.47297 * 120.87845 * 179.97438 * 7 5 4 9 9 O 1.21617 * 119.99989 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00023 * 180.02562 * 8 7 5 11 11 C 1.46493 * 120.00034 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.47023 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.69593 * 94.99813 * 12 11 10 14 14 C 1.50317 * 123.64954 * 180.85816 * 13 12 11 15 15 N 1.47011 * 109.16884 * 349.02090 * 14 13 12 16 16 C 1.36931 * 121.37334 * 222.97350 * 15 14 13 17 17 H 1.07998 * 120.00050 * 155.96948 * 16 15 14 18 18 C 1.38811 * 120.00142 * 335.96078 * 16 15 14 19 19 N 1.31615 * 120.00395 * 344.53021 * 18 16 15 20 20 Si 1.86809 * 120.00002 * 164.52838 * 18 16 15 21 21 H 1.48500 * 109.46809 * 60.00139 * 20 18 16 22 22 H 1.48503 * 109.46989 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46920 * 300.00103 * 20 18 16 24 24 C 1.47341 * 117.24645 * 42.94585 * 15 14 13 25 25 C 1.49971 * 117.68948 * 274.73263 * 12 11 10 26 26 C 1.34348 * 118.80670 * 179.73706 * 2 1 3 27 27 H 1.08993 * 109.47565 * 89.99820 * 1 2 3 28 28 H 1.09002 * 109.46586 * 210.00025 * 1 2 3 29 29 H 1.08993 * 109.46756 * 329.99226 * 1 2 3 30 30 H 1.07997 * 119.10069 * 359.74268 * 3 2 1 31 31 H 1.08007 * 120.32916 * 180.02562 * 4 3 2 32 32 H 0.97006 * 119.99550 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47037 * 299.99025 * 11 10 8 34 34 H 1.08997 * 109.47620 * 59.99885 * 11 10 8 35 35 H 1.07996 * 118.17365 * 0.88168 * 13 12 11 36 36 H 1.08995 * 109.52520 * 108.92739 * 14 13 12 37 37 H 1.09008 * 109.52192 * 229.11556 * 14 13 12 38 38 H 0.96995 * 120.00467 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.77664 * 57.81036 * 24 15 14 40 40 H 1.08998 * 109.77405 * 178.61786 * 24 15 14 41 41 H 1.08999 * 109.31712 * 281.29414 * 25 12 11 42 42 H 1.09004 * 109.31352 * 40.72109 * 25 12 11 43 43 H 1.08003 * 119.81244 * 0.25679 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4651 1.2585 0.0055 5 6 4.2228 0.0615 0.0120 6 8 5.4434 0.0886 0.0167 7 6 3.4917 -1.2149 0.0119 8 6 4.2129 -2.4992 0.0179 9 8 5.4290 -2.5137 0.0226 10 7 3.5252 -3.6583 0.0171 11 6 4.2424 -4.9356 0.0237 12 6 3.2495 -6.0693 0.0220 13 6 2.9335 -6.5906 -1.1200 14 6 1.9454 -7.7122 -1.2788 15 7 1.6271 -8.2661 0.0453 16 6 1.5424 -9.6172 0.2513 17 1 1.6957 -10.0233 1.2402 18 6 1.2594 -10.4648 -0.8109 19 7 0.7770 -9.9751 -1.9333 20 14 1.5632 -12.3008 -0.6474 21 1 0.7464 -12.8401 0.4695 22 1 1.1831 -12.9800 -1.9121 23 1 3.0019 -12.5416 -0.3697 24 6 1.4035 -7.3074 1.1415 25 6 2.7018 -6.5180 1.3440 26 6 2.1124 -1.1772 0.0054 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3632 0.8899 0.5139 30 1 1.5445 2.1030 -0.0042 31 1 3.9610 2.2180 0.0058 32 1 2.5552 -3.6466 0.0130 33 1 4.8727 -5.0029 -0.8631 34 1 4.8639 -4.9988 0.9169 35 1 3.4063 -6.1980 -2.0081 36 1 1.0353 -7.3330 -1.7433 37 1 2.3775 -8.4924 -1.9056 38 1 0.5795 -10.5674 -2.6756 39 1 0.5921 -6.6289 0.8783 40 1 1.1538 -7.8449 2.0563 41 1 3.4373 -7.1485 1.8437 42 1 2.4980 -5.6454 1.9647 43 1 1.5500 -2.0993 0.0054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000930649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:29 Heat of formation + Delta-G solvation = 13.726181 kcal Electronic energy + Delta-G solvation = -25802.475544 eV Core-core repulsion = 22042.610692 eV Total energy + Delta-G solvation = -3759.864852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.31410 -39.29525 -38.05096 -37.52840 -34.82505 -33.20729 -32.80276 -32.08704 -30.74891 -29.72958 -27.55199 -26.84237 -25.09254 -23.98890 -22.95163 -22.69779 -21.16931 -20.74080 -18.53139 -17.72981 -17.65802 -17.06206 -16.20234 -16.15442 -15.61104 -15.45013 -15.16604 -14.79960 -14.78293 -14.13295 -13.96708 -13.80345 -13.56412 -13.52891 -13.42367 -13.03829 -12.87610 -12.69136 -12.36909 -12.22836 -12.03208 -11.59434 -11.37466 -10.92983 -10.75593 -10.43197 -10.34910 -10.05631 -10.01668 -9.87021 -9.64288 -9.29629 -8.87942 -8.70905 -8.22272 -8.07946 -6.79200 -5.83808 -3.22728 0.59762 1.03831 2.01587 2.59176 2.98918 3.36800 3.42652 3.44364 3.54013 3.76164 3.80816 4.08088 4.29234 4.46356 4.50121 4.56050 4.77529 4.82065 5.03614 5.17470 5.30483 5.33770 5.39951 5.45041 5.56316 5.86045 5.95446 6.02059 6.12183 6.15617 6.20740 6.29131 6.40674 6.45938 6.59099 6.69564 6.82008 7.13530 7.22905 7.30008 7.67671 7.70622 7.79227 7.99853 8.34028 8.45967 9.15469 9.78145 10.35770 11.26616 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002613 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.416864 B =10714.448201 C =11390.777142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.476 5.476 3 C 0.126 3.874 4 C -0.267 4.267 5 C 0.405 3.595 6 O -0.479 6.479 7 C -0.296 4.296 8 C 0.568 3.432 9 O -0.516 6.516 10 N -0.726 5.726 11 C 0.159 3.841 12 C -0.165 4.165 13 C -0.126 4.126 14 C 0.194 3.806 15 N -0.595 5.595 16 C -0.247 4.247 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.145 3.855 25 C -0.091 4.091 26 C 0.173 3.827 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.392 0.608 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.093 0.907 38 H 0.255 0.745 39 H 0.022 0.978 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 22.735 3.420 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.162 5.162 3 C 0.002 3.998 4 C -0.291 4.291 5 C 0.290 3.710 6 O -0.359 6.359 7 C -0.307 4.307 8 C 0.354 3.646 9 O -0.391 6.391 10 N -0.379 5.379 11 C 0.037 3.963 12 C -0.166 4.166 13 C -0.147 4.147 14 C 0.070 3.930 15 N -0.318 5.318 16 C -0.377 4.377 17 H 0.086 0.914 18 C -0.198 4.198 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.018 3.982 25 C -0.130 4.130 26 C 0.042 3.958 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.226 0.774 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.813 22.631 3.280 23.368 hybrid contribution -0.544 -0.929 -0.088 1.080 sum -5.357 21.701 3.192 22.580 Atomic orbital electron populations 1.22526 0.75946 1.05763 1.04601 1.42681 1.08714 1.04474 1.60359 1.21700 0.94323 0.88361 0.95439 1.22500 0.93152 1.01428 1.12028 1.18198 0.89320 0.86987 0.76455 1.90830 1.14323 1.88939 1.41851 1.22571 0.92219 0.97346 1.18597 1.17529 0.87247 0.82558 0.77225 1.90849 1.12963 1.86916 1.48382 1.46095 1.09805 1.05599 1.76390 1.20429 0.93472 0.80396 1.02006 1.20521 1.01357 0.98586 0.96154 1.23292 0.97400 0.97772 0.96199 1.19755 0.93184 0.91933 0.88176 1.44119 1.81049 1.01794 1.04876 1.19139 1.41708 0.81386 0.95435 0.91404 1.24980 0.99332 0.98183 0.97325 1.69986 1.46388 1.34340 1.04830 0.86323 0.78255 0.85088 0.76844 1.20920 1.21610 1.21021 1.20981 0.92833 0.91837 0.92515 1.20801 0.99700 0.98827 0.93651 1.22284 0.93258 0.89177 0.91111 0.89877 0.88740 0.88934 0.81845 0.82936 0.77369 0.91616 0.91559 0.88724 0.94192 0.88895 0.93532 0.96022 0.92487 0.91635 0.92940 0.81564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.02 10.53 59.85 0.63 0.65 16 2 N -0.48 -2.18 2.97 -124.40 -0.37 -2.55 16 3 C 0.13 0.62 10.17 -17.09 -0.17 0.44 16 4 C -0.27 -2.42 10.01 -39.47 -0.40 -2.81 16 5 C 0.41 5.93 6.96 -34.68 -0.24 5.68 16 6 O -0.48 -9.54 16.41 -15.17 -0.25 -9.79 16 7 C -0.30 -3.79 6.05 -102.72 -0.62 -4.41 16 8 C 0.57 9.15 7.77 -12.58 -0.10 9.05 16 9 O -0.52 -10.97 15.57 -14.75 -0.23 -11.20 16 10 N -0.73 -9.85 5.50 -62.61 -0.34 -10.19 16 11 C 0.16 2.49 5.66 -5.19 -0.03 2.46 16 12 C -0.17 -2.78 5.22 -100.99 -0.53 -3.31 16 13 C -0.13 -2.33 9.47 -35.78 -0.34 -2.67 16 14 C 0.19 4.45 5.23 -5.10 -0.03 4.42 16 15 N -0.60 -14.40 3.01 -173.56 -0.52 -14.92 16 16 C -0.25 -6.64 9.71 -15.06 -0.15 -6.78 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 18 C 0.00 -0.01 5.01 -17.43 -0.09 -0.09 16 19 N -0.91 -25.64 11.08 55.49 0.61 -25.03 16 20 Si 0.91 21.43 29.58 -169.99 -5.03 16.40 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.14 2.84 6.59 -3.43 -0.02 2.82 16 25 C -0.09 -1.52 5.95 -28.09 -0.17 -1.69 16 26 C 0.17 1.26 9.79 -16.54 -0.16 1.10 16 27 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.09 -0.03 7.96 -51.93 -0.41 -0.45 16 29 H 0.09 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.16 0.09 7.98 -52.49 -0.42 -0.33 16 31 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.39 4.13 6.54 -40.82 -0.27 3.86 16 33 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 34 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.09 1.60 7.73 -52.49 -0.41 1.19 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 2.40 6.41 -51.92 -0.33 2.07 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.17 0.74 6.35 -52.48 -0.33 0.41 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -38.88 359.30 -9.03 -47.91 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.91 Total: -0.90 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.41 Total: 4.85 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.62 Total: -52.69 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.48 Total: -20.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.88 -9.03 -47.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000930649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.637 kcal (2) G-P(sol) polarization free energy of solvation -38.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds