Wall clock time and date at job start Tue Mar 31 2020 11:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35587 * 118.80291 * 2 1 4 4 C 1.34863 * 121.79541 * 179.72428 * 3 2 1 5 5 C 1.41673 * 119.34269 * 359.97438 * 4 3 2 6 6 O 1.22085 * 121.06495 * 179.97438 * 5 4 3 7 7 C 1.47095 * 117.86013 * 0.02562 * 5 4 3 8 8 C 1.47297 * 120.87845 * 179.97438 * 7 5 4 9 9 O 1.21617 * 119.99989 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00023 * 180.02562 * 8 7 5 11 11 C 1.46493 * 120.00034 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.47023 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.69593 * 94.99813 * 12 11 10 14 14 C 1.50317 * 123.64954 * 180.85816 * 13 12 11 15 15 N 1.47011 * 109.16884 * 349.02090 * 14 13 12 16 16 C 1.36931 * 121.37334 * 222.97350 * 15 14 13 17 17 H 1.07998 * 120.00050 * 155.96948 * 16 15 14 18 18 C 1.38811 * 120.00142 * 335.96078 * 16 15 14 19 19 N 1.31615 * 120.00395 * 344.53021 * 18 16 15 20 20 Si 1.86809 * 120.00002 * 164.52838 * 18 16 15 21 21 H 1.48500 * 109.46809 * 60.00139 * 20 18 16 22 22 H 1.48503 * 109.46989 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46920 * 300.00103 * 20 18 16 24 24 C 1.47341 * 117.24645 * 42.94585 * 15 14 13 25 25 C 1.49971 * 117.68948 * 274.73263 * 12 11 10 26 26 C 1.34348 * 118.80670 * 179.73706 * 2 1 3 27 27 H 1.08993 * 109.47565 * 89.99820 * 1 2 3 28 28 H 1.09002 * 109.46586 * 210.00025 * 1 2 3 29 29 H 1.08993 * 109.46756 * 329.99226 * 1 2 3 30 30 H 1.07997 * 119.10069 * 359.74268 * 3 2 1 31 31 H 1.08007 * 120.32916 * 180.02562 * 4 3 2 32 32 H 0.97006 * 119.99550 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47037 * 299.99025 * 11 10 8 34 34 H 1.08997 * 109.47620 * 59.99885 * 11 10 8 35 35 H 1.07996 * 118.17365 * 0.88168 * 13 12 11 36 36 H 1.08995 * 109.52520 * 108.92739 * 14 13 12 37 37 H 1.09008 * 109.52192 * 229.11556 * 14 13 12 38 38 H 0.96995 * 120.00467 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.77664 * 57.81036 * 24 15 14 40 40 H 1.08998 * 109.77405 * 178.61786 * 24 15 14 41 41 H 1.08999 * 109.31712 * 281.29414 * 25 12 11 42 42 H 1.09004 * 109.31352 * 40.72109 * 25 12 11 43 43 H 1.08003 * 119.81244 * 0.25679 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4651 1.2585 0.0055 5 6 4.2228 0.0615 0.0120 6 8 5.4434 0.0886 0.0167 7 6 3.4917 -1.2149 0.0119 8 6 4.2129 -2.4992 0.0179 9 8 5.4290 -2.5137 0.0226 10 7 3.5252 -3.6583 0.0171 11 6 4.2424 -4.9356 0.0237 12 6 3.2495 -6.0693 0.0220 13 6 2.9335 -6.5906 -1.1200 14 6 1.9454 -7.7122 -1.2788 15 7 1.6271 -8.2661 0.0453 16 6 1.5424 -9.6172 0.2513 17 1 1.6957 -10.0233 1.2402 18 6 1.2594 -10.4648 -0.8109 19 7 0.7770 -9.9751 -1.9333 20 14 1.5632 -12.3008 -0.6474 21 1 0.7464 -12.8401 0.4695 22 1 1.1831 -12.9800 -1.9121 23 1 3.0019 -12.5416 -0.3697 24 6 1.4035 -7.3074 1.1415 25 6 2.7018 -6.5180 1.3440 26 6 2.1124 -1.1772 0.0054 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3632 0.8899 0.5139 30 1 1.5445 2.1030 -0.0042 31 1 3.9610 2.2180 0.0058 32 1 2.5552 -3.6466 0.0130 33 1 4.8727 -5.0029 -0.8631 34 1 4.8639 -4.9988 0.9169 35 1 3.4063 -6.1980 -2.0081 36 1 1.0353 -7.3330 -1.7433 37 1 2.3775 -8.4924 -1.9056 38 1 0.5795 -10.5674 -2.6756 39 1 0.5921 -6.6289 0.8783 40 1 1.1538 -7.8449 2.0563 41 1 3.4373 -7.1485 1.8437 42 1 2.4980 -5.6454 1.9647 43 1 1.5500 -2.0993 0.0054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000930649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:28 Heat of formation + Delta-G solvation = -13.713966 kcal Electronic energy + Delta-G solvation = -25803.665438 eV Core-core repulsion = 22042.610692 eV Total energy + Delta-G solvation = -3761.054746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02183 -40.45616 -39.32896 -38.77154 -36.35235 -34.66525 -33.52999 -33.17586 -32.22720 -31.37713 -28.66761 -27.63825 -26.29481 -25.26144 -24.35629 -23.67750 -22.76654 -21.86870 -19.59656 -19.23935 -18.46429 -17.86903 -17.38086 -17.04216 -16.75427 -16.71202 -16.62160 -16.01661 -15.71614 -15.53645 -15.31277 -15.17285 -14.84718 -14.67708 -14.36068 -14.15942 -13.93897 -13.60765 -13.48103 -13.26036 -13.18570 -12.90334 -12.75970 -12.65575 -12.58017 -12.24893 -12.09935 -11.69387 -11.30654 -11.19814 -10.72256 -10.66872 -10.34836 -10.12289 -9.64394 -9.03598 -8.73082 -7.87512 -5.27894 -0.16717 0.39847 1.17499 1.47511 1.50816 1.56378 1.56511 1.91793 2.38339 2.52125 2.82596 3.29755 3.32293 3.64031 3.69035 3.80702 3.87490 3.95346 3.97782 4.27542 4.42876 4.44482 4.55851 4.59256 4.65511 4.68635 4.76305 4.82376 4.85933 4.93611 4.93854 5.12634 5.24090 5.35184 5.37030 5.43658 5.49843 5.62923 5.72218 5.78474 5.81977 6.16854 6.35441 6.61819 7.11022 7.15233 7.33104 7.85680 8.38537 9.20735 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002613 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.416864 B =10714.448201 C =11390.777142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.458 5.458 3 C 0.167 3.833 4 C -0.300 4.300 5 C 0.379 3.621 6 O -0.570 6.570 7 C -0.354 4.354 8 C 0.566 3.434 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.168 3.832 12 C -0.136 4.136 13 C -0.140 4.140 14 C 0.207 3.793 15 N -0.616 5.616 16 C -0.257 4.257 17 H 0.069 0.931 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.284 1.284 24 C 0.141 3.859 25 C -0.085 4.085 26 C 0.221 3.779 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.226 0.774 31 H 0.158 0.842 32 H 0.410 0.590 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.021 0.979 37 H 0.054 0.946 38 H 0.250 0.750 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 24.682 4.640 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.140 5.140 3 C 0.042 3.958 4 C -0.323 4.323 5 C 0.272 3.728 6 O -0.458 6.458 7 C -0.364 4.364 8 C 0.356 3.644 9 O -0.463 6.463 10 N -0.362 5.362 11 C 0.045 3.955 12 C -0.137 4.137 13 C -0.160 4.160 14 C 0.081 3.919 15 N -0.340 5.340 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.247 4.247 19 N -0.584 5.584 20 Si 0.793 3.207 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.210 1.210 24 C 0.016 3.984 25 C -0.124 4.124 26 C 0.085 3.915 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.242 0.758 31 H 0.176 0.824 32 H 0.248 0.752 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.737 24.615 4.527 26.509 hybrid contribution 0.343 -1.425 -0.405 1.521 sum -8.395 23.190 4.122 25.005 Atomic orbital electron populations 1.23046 0.72002 1.08311 1.06539 1.43348 1.11024 1.03664 1.56013 1.22462 0.93085 0.90229 0.90068 1.22392 0.94897 0.99628 1.15365 1.19060 0.88944 0.89529 0.75311 1.90774 1.17468 1.90109 1.47496 1.22158 0.94404 0.95027 1.24826 1.18065 0.86697 0.83954 0.75728 1.90807 1.15960 1.87834 1.51703 1.45795 1.10496 1.04217 1.75724 1.20186 0.93066 0.80868 1.01401 1.20551 0.99801 0.97654 0.95651 1.22961 0.98019 0.97362 0.97691 1.19397 0.93212 0.91958 0.87286 1.44399 1.81452 1.01873 1.06269 1.19461 1.40730 0.83074 0.95461 0.91320 1.25678 0.99856 1.01856 0.97299 1.70131 1.47726 1.35228 1.05312 0.85386 0.77938 0.80768 0.76641 1.19974 1.22052 1.21016 1.21181 0.94623 0.91478 0.91121 1.20754 0.97973 0.99781 0.93868 1.22618 0.91299 0.91564 0.86018 0.88166 0.87148 0.85772 0.75784 0.82394 0.75232 0.92764 0.91979 0.87305 0.96163 0.92738 0.94126 0.94466 0.92289 0.92255 0.89118 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.27 10.53 127.77 1.35 1.08 16 2 N -0.46 -1.51 2.97 -547.48 -1.63 -3.13 16 3 C 0.17 0.78 10.17 83.34 0.85 1.62 16 4 C -0.30 -5.12 10.01 22.34 0.22 -4.89 16 5 C 0.38 11.76 6.96 25.44 0.18 11.94 16 6 O -0.57 -25.40 16.41 13.54 0.22 -25.18 16 7 C -0.35 -8.96 6.05 -18.63 -0.11 -9.07 16 8 C 0.57 18.73 7.77 86.63 0.67 19.40 16 9 O -0.58 -26.72 15.57 15.05 0.23 -26.48 16 10 N -0.71 -18.28 5.50 -470.24 -2.59 -20.87 16 11 C 0.17 5.13 5.66 85.64 0.48 5.61 16 12 C -0.14 -4.34 5.22 -15.13 -0.08 -4.42 16 13 C -0.14 -5.10 9.47 27.11 0.26 -4.85 16 14 C 0.21 9.59 5.23 85.42 0.45 10.04 16 15 N -0.62 -29.65 3.01 -703.03 -2.11 -31.76 16 16 C -0.26 -13.82 9.71 84.03 0.82 -13.01 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 18 C -0.05 -2.85 5.01 84.86 0.43 -2.42 16 19 N -0.94 -53.97 11.08 21.65 0.24 -53.73 16 20 Si 0.96 44.46 29.58 68.60 2.03 46.49 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 C 0.14 5.23 6.59 86.32 0.57 5.80 16 25 C -0.09 -2.63 5.95 29.72 0.18 -2.45 16 26 C 0.22 2.32 9.79 84.25 0.83 3.15 16 27 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.11 -0.93 7.96 -2.39 -0.02 -0.95 16 29 H 0.12 -1.43 7.96 -2.39 -0.02 -1.45 16 30 H 0.23 -1.55 7.98 -2.91 -0.02 -1.57 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.41 7.25 6.54 -92.70 -0.61 6.65 16 33 H 0.05 1.81 7.78 -2.39 -0.02 1.79 16 34 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 2.93 6.41 -2.38 -0.02 2.91 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 2.14 7.96 -2.39 -0.02 2.13 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.20 0.61 6.35 -2.91 -0.02 0.59 16 Total: -1.00 -97.24 359.30 3.90 -93.34 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.43 Total: 3.80 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 7.07 Total: 17.53 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -6.09 Total: -109.50 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: 0.46 Total: -51.66 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -97.24 3.90 -93.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000930649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.627 kcal (2) G-P(sol) polarization free energy of solvation -97.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds