Wall clock time and date at job start Tue Mar 31 2020 11:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35742 * 117.00296 * 2 1 4 4 C 1.39216 * 120.81610 * 0.24838 * 3 2 1 5 5 C 1.38314 * 119.28925 * 180.29398 * 4 3 2 6 6 N 1.31617 * 120.97042 * 359.73174 * 5 4 3 7 7 C 1.32790 * 121.78302 * 359.97438 * 6 5 4 8 8 C 1.48181 * 119.69841 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99868 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99826 * 359.97435 * 8 7 6 11 11 C 1.46505 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46986 * 180.02562 * 11 10 8 13 13 C 1.29450 * 117.69650 * 95.00059 * 12 11 10 14 14 C 1.50327 * 123.65358 * 180.85554 * 13 12 11 15 15 N 1.47003 * 109.16333 * 349.02341 * 14 13 12 16 16 C 1.36933 * 121.37495 * 222.96455 * 15 14 13 17 17 H 1.07999 * 120.00168 * 155.97589 * 16 15 14 18 18 C 1.38819 * 120.00159 * 335.97628 * 16 15 14 19 19 N 1.31615 * 119.99724 * 344.51087 * 18 16 15 20 20 Si 1.86792 * 120.00074 * 164.51077 * 18 16 15 21 21 H 1.48499 * 109.47251 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47022 * 119.99845 * 20 18 16 23 23 H 1.48504 * 109.47290 * 239.99852 * 20 18 16 24 24 C 1.47344 * 117.25139 * 42.94593 * 15 14 13 25 25 C 1.49972 * 117.69377 * 274.73936 * 12 11 10 26 26 C 1.39108 * 120.60137 * 0.02562 * 7 6 5 27 27 H 1.09006 * 109.47011 * 59.99710 * 1 2 3 28 28 H 1.08995 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46540 * 299.99836 * 1 2 3 30 30 H 1.08006 * 120.35393 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.51048 * 179.74576 * 5 4 3 32 32 H 0.96999 * 120.00010 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47039 * 300.00038 * 11 10 8 34 34 H 1.08995 * 109.47166 * 60.00314 * 11 10 8 35 35 H 1.08003 * 118.17855 * 0.87787 * 13 12 11 36 36 H 1.08997 * 109.51854 * 108.92677 * 14 13 12 37 37 H 1.08999 * 109.52231 * 229.11768 * 14 13 12 38 38 H 0.96998 * 120.00280 * 179.97438 * 19 18 16 39 39 H 1.09007 * 109.77542 * 57.80921 * 24 15 14 40 40 H 1.08998 * 109.77907 * 178.61192 * 24 15 14 41 41 H 1.09003 * 109.31456 * 281.28956 * 25 12 11 42 42 H 1.09001 * 109.31269 * 40.71556 * 25 12 11 43 43 H 1.08007 * 120.50546 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3039 2.3877 0.0052 5 6 1.9644 3.6029 -0.0012 6 7 3.2794 3.6590 -0.0067 7 6 4.0263 2.5610 -0.0060 8 6 5.5035 2.6779 -0.0118 9 8 6.1922 1.6768 -0.0107 10 7 6.0831 3.8947 -0.0184 11 6 7.5435 4.0103 -0.0247 12 6 7.9321 5.4663 -0.0307 13 6 8.1885 6.0253 1.1084 14 6 8.5698 7.4715 1.2596 15 7 8.8532 8.0371 -0.0673 16 6 9.9282 8.8588 -0.2773 17 1 10.3514 8.9524 -1.2665 18 6 10.4742 9.5717 0.7814 19 7 9.7981 9.7057 1.9027 20 14 12.1684 10.3406 0.6146 21 1 12.7144 10.0475 -0.7349 22 1 12.0649 11.8107 0.7976 23 1 13.0724 9.7755 1.6484 24 6 7.9330 7.6830 -1.1622 25 6 8.0004 6.1640 -1.3565 26 6 3.4346 1.3021 0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.2244 2.3533 0.0097 31 1 1.3928 4.5192 -0.0013 32 1 5.5333 4.6938 -0.0189 33 1 7.9499 3.5298 0.8653 34 1 7.9426 3.5237 -0.9146 35 1 8.1253 5.4188 1.9998 36 1 7.7476 8.0186 1.7207 37 1 9.4580 7.5504 1.8865 38 1 10.1797 10.2035 2.6426 39 1 6.9173 7.9805 -0.9012 40 1 8.2407 8.1848 -2.0796 41 1 8.9340 5.9017 -1.8543 42 1 7.1625 5.8439 -1.9758 43 1 4.0435 0.4100 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001032292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:07 Heat of formation + Delta-G solvation = 6.897481 kcal Electronic energy + Delta-G solvation = -25344.555735 eV Core-core repulsion = 21584.394768 eV Total energy + Delta-G solvation = -3760.160966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.15116 -39.64220 -38.39647 -37.65331 -34.97458 -32.96441 -31.97091 -31.80169 -30.75204 -29.68519 -28.17336 -27.06464 -24.84220 -23.73971 -23.52411 -22.68479 -21.14040 -20.75564 -19.06775 -17.72717 -17.58047 -16.80617 -16.39507 -16.12199 -15.81232 -15.62198 -15.35378 -14.98709 -14.88362 -14.32841 -14.10010 -13.95361 -13.77580 -13.47081 -13.37520 -12.89619 -12.85102 -12.24790 -12.10739 -12.00321 -11.81945 -11.54014 -11.33813 -10.91101 -10.73932 -10.48025 -10.32964 -10.27277 -9.87722 -9.81135 -9.64469 -9.56835 -9.33604 -8.93706 -8.67429 -8.04206 -6.73458 -5.78935 -3.17540 0.32196 0.90921 2.43380 2.61263 2.70818 3.38536 3.43814 3.46318 3.48466 3.62114 4.00259 4.17700 4.40856 4.50329 4.57737 4.59506 4.72214 4.92291 4.93683 5.16323 5.24474 5.37351 5.39727 5.41520 5.59607 5.59875 5.83828 5.92500 6.02535 6.10769 6.19998 6.36764 6.45964 6.54673 6.68536 6.75687 6.90086 7.18842 7.27340 7.32697 7.39697 7.68191 7.74737 7.84050 8.18089 8.38898 9.20424 9.83227 10.41401 11.31559 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034608 B = 0.002224 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.859934 B =12588.950852 C =12884.863236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.162 3.838 4 C -0.246 4.246 5 C 0.138 3.862 6 N -0.479 5.479 7 C 0.120 3.880 8 C 0.566 3.434 9 O -0.537 6.537 10 N -0.696 5.696 11 C 0.155 3.845 12 C -0.166 4.166 13 C -0.122 4.122 14 C 0.194 3.806 15 N -0.596 5.596 16 C -0.244 4.244 17 H 0.069 0.931 18 C -0.003 4.003 19 N -0.910 5.910 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.145 4.145 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.413 0.587 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.318 -16.384 -3.372 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.267 4.267 5 C -0.021 4.021 6 N -0.194 5.194 7 C -0.018 4.018 8 C 0.350 3.650 9 O -0.414 6.414 10 N -0.346 5.346 11 C 0.033 3.967 12 C -0.167 4.167 13 C -0.143 4.143 14 C 0.069 3.931 15 N -0.319 5.319 16 C -0.373 4.373 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.017 3.983 25 C -0.129 4.129 26 C -0.167 4.167 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.184 0.816 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.202 -16.414 -3.249 25.469 hybrid contribution -0.239 0.023 0.110 0.264 sum -19.441 -16.390 -3.139 25.621 Atomic orbital electron populations 1.23183 0.77484 1.04627 1.01779 1.86099 1.22081 1.25974 1.87765 1.19204 0.92117 0.84859 0.93006 1.22425 1.01840 0.93204 1.09208 1.22625 0.89627 0.97277 0.92550 1.67649 1.07391 1.31169 1.13224 1.21036 0.94512 0.88611 0.97618 1.17801 0.85616 0.84085 0.77509 1.90788 1.63364 1.36643 1.50581 1.46056 1.08386 1.08087 1.72076 1.20559 0.78650 0.95433 1.02092 1.20468 1.06381 0.93537 0.96320 1.23291 0.95115 0.99802 0.96115 1.19764 1.00353 0.84834 0.88163 1.44140 1.28510 1.54521 1.04702 1.19229 1.04550 1.18027 0.95527 0.91303 1.24994 0.99286 0.98342 0.97421 1.70016 1.36199 1.44254 1.05038 0.86180 0.84275 0.78555 0.77528 1.20309 1.21791 1.21608 1.20995 0.93278 0.91514 0.92496 1.20785 1.00442 0.98124 0.93545 1.21401 0.91971 0.99804 1.03543 0.92170 0.87653 0.92154 0.83857 0.81572 0.75004 0.91335 0.91255 0.88747 0.94034 0.88876 0.93672 0.95751 0.92476 0.91710 0.92831 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.31 -2.61 10.51 -18.93 -0.20 -2.81 16 3 C 0.16 1.54 6.73 -38.85 -0.26 1.28 16 4 C -0.25 -1.84 9.12 -39.19 -0.36 -2.19 16 5 C 0.14 1.19 11.17 -17.62 -0.20 0.99 16 6 N -0.48 -5.61 9.54 -9.87 -0.09 -5.70 16 7 C 0.12 1.54 6.75 -83.05 -0.56 0.98 16 8 C 0.57 8.49 7.81 -12.18 -0.10 8.40 16 9 O -0.54 -9.38 16.32 5.35 0.09 -9.30 16 10 N -0.70 -10.08 5.54 -62.32 -0.35 -10.43 16 11 C 0.15 2.40 5.66 -5.19 -0.03 2.37 16 12 C -0.17 -2.90 5.22 -100.99 -0.53 -3.43 16 13 C -0.12 -2.35 9.47 -35.78 -0.34 -2.69 16 14 C 0.19 4.59 5.23 -5.10 -0.03 4.56 16 15 N -0.60 -14.85 3.01 -173.56 -0.52 -15.37 16 16 C -0.24 -6.67 9.71 -15.06 -0.15 -6.82 16 17 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 18 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 19 N -0.91 -26.17 11.08 55.49 0.61 -25.55 16 20 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.14 2.97 6.59 -3.44 -0.02 2.95 16 25 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 26 C -0.15 -1.69 9.60 -38.89 -0.37 -2.07 16 27 H 0.06 0.17 7.72 -51.93 -0.40 -0.23 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.18 7.70 -51.93 -0.40 -0.22 16 30 H 0.14 0.61 6.45 -52.48 -0.34 0.27 16 31 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.41 5.75 7.79 -40.82 -0.32 5.43 16 33 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 34 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.09 1.64 7.73 -52.48 -0.41 1.23 16 36 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 2.46 6.41 -51.93 -0.33 2.12 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.16 1.82 7.64 -52.48 -0.40 1.42 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -32.35 360.98 -8.16 -40.51 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.92 Total: 2.99 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.20 Total: 3.50 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.35 Total: -57.06 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.35 -8.16 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001032292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.409 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds