Wall clock time and date at job start Tue Mar 31 2020 11:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35742 * 117.00296 * 2 1 4 4 C 1.39216 * 120.81610 * 0.24838 * 3 2 1 5 5 C 1.38314 * 119.28925 * 180.29398 * 4 3 2 6 6 N 1.31617 * 120.97042 * 359.73174 * 5 4 3 7 7 C 1.32790 * 121.78302 * 359.97438 * 6 5 4 8 8 C 1.48181 * 119.69841 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99868 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99826 * 359.97435 * 8 7 6 11 11 C 1.46505 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46986 * 180.02562 * 11 10 8 13 13 C 1.29450 * 117.69650 * 95.00059 * 12 11 10 14 14 C 1.50327 * 123.65358 * 180.85554 * 13 12 11 15 15 N 1.47003 * 109.16333 * 349.02341 * 14 13 12 16 16 C 1.36933 * 121.37495 * 222.96455 * 15 14 13 17 17 H 1.07999 * 120.00168 * 155.97589 * 16 15 14 18 18 C 1.38819 * 120.00159 * 335.97628 * 16 15 14 19 19 N 1.31615 * 119.99724 * 344.51087 * 18 16 15 20 20 Si 1.86792 * 120.00074 * 164.51077 * 18 16 15 21 21 H 1.48499 * 109.47251 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47022 * 119.99845 * 20 18 16 23 23 H 1.48504 * 109.47290 * 239.99852 * 20 18 16 24 24 C 1.47344 * 117.25139 * 42.94593 * 15 14 13 25 25 C 1.49972 * 117.69377 * 274.73936 * 12 11 10 26 26 C 1.39108 * 120.60137 * 0.02562 * 7 6 5 27 27 H 1.09006 * 109.47011 * 59.99710 * 1 2 3 28 28 H 1.08995 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46540 * 299.99836 * 1 2 3 30 30 H 1.08006 * 120.35393 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.51048 * 179.74576 * 5 4 3 32 32 H 0.96999 * 120.00010 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47039 * 300.00038 * 11 10 8 34 34 H 1.08995 * 109.47166 * 60.00314 * 11 10 8 35 35 H 1.08003 * 118.17855 * 0.87787 * 13 12 11 36 36 H 1.08997 * 109.51854 * 108.92677 * 14 13 12 37 37 H 1.08999 * 109.52231 * 229.11768 * 14 13 12 38 38 H 0.96998 * 120.00280 * 179.97438 * 19 18 16 39 39 H 1.09007 * 109.77542 * 57.80921 * 24 15 14 40 40 H 1.08998 * 109.77907 * 178.61192 * 24 15 14 41 41 H 1.09003 * 109.31456 * 281.28956 * 25 12 11 42 42 H 1.09001 * 109.31269 * 40.71556 * 25 12 11 43 43 H 1.08007 * 120.50546 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3039 2.3877 0.0052 5 6 1.9644 3.6029 -0.0012 6 7 3.2794 3.6590 -0.0067 7 6 4.0263 2.5610 -0.0060 8 6 5.5035 2.6779 -0.0118 9 8 6.1922 1.6768 -0.0107 10 7 6.0831 3.8947 -0.0184 11 6 7.5435 4.0103 -0.0247 12 6 7.9321 5.4663 -0.0307 13 6 8.1885 6.0253 1.1084 14 6 8.5698 7.4715 1.2596 15 7 8.8532 8.0371 -0.0673 16 6 9.9282 8.8588 -0.2773 17 1 10.3514 8.9524 -1.2665 18 6 10.4742 9.5717 0.7814 19 7 9.7981 9.7057 1.9027 20 14 12.1684 10.3406 0.6146 21 1 12.7144 10.0475 -0.7349 22 1 12.0649 11.8107 0.7976 23 1 13.0724 9.7755 1.6484 24 6 7.9330 7.6830 -1.1622 25 6 8.0004 6.1640 -1.3565 26 6 3.4346 1.3021 0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.2244 2.3533 0.0097 31 1 1.3928 4.5192 -0.0013 32 1 5.5333 4.6938 -0.0189 33 1 7.9499 3.5298 0.8653 34 1 7.9426 3.5237 -0.9146 35 1 8.1253 5.4188 1.9998 36 1 7.7476 8.0186 1.7207 37 1 9.4580 7.5504 1.8865 38 1 10.1797 10.2035 2.6426 39 1 6.9173 7.9805 -0.9012 40 1 8.2407 8.1848 -2.0796 41 1 8.9340 5.9017 -1.8543 42 1 7.1625 5.8439 -1.9758 43 1 4.0435 0.4100 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001032292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:06 Heat of formation + Delta-G solvation = -15.053787 kcal Electronic energy + Delta-G solvation = -25345.507613 eV Core-core repulsion = 21584.394768 eV Total energy + Delta-G solvation = -3761.112845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92623 -40.65662 -39.43644 -38.95634 -36.47816 -34.59408 -32.91826 -32.71220 -32.19885 -31.39652 -28.84259 -28.38678 -26.31350 -24.80368 -24.44212 -24.26382 -22.80254 -21.79545 -19.98201 -19.43347 -18.44264 -17.84303 -17.25592 -16.97956 -16.96790 -16.90116 -16.66517 -16.38466 -15.80570 -15.57609 -15.41885 -15.20502 -14.96951 -14.77927 -14.69345 -14.26908 -13.94412 -13.60095 -13.40014 -13.25795 -12.92928 -12.80573 -12.60415 -12.54090 -12.32921 -12.19818 -12.08831 -11.69910 -11.52972 -11.24776 -10.73454 -10.68502 -10.44707 -10.10924 -9.99903 -9.66202 -8.74350 -7.87451 -5.28644 -0.48668 0.19614 1.14431 1.47055 1.49052 1.59249 1.62553 1.93572 2.40950 2.51968 2.77810 3.12444 3.29555 3.57647 3.62372 3.78929 3.86122 3.96041 3.97195 4.14587 4.33760 4.38803 4.43510 4.48471 4.54377 4.62344 4.69643 4.73547 4.76298 4.85094 4.91730 4.92599 5.10873 5.22063 5.28206 5.34797 5.40933 5.48828 5.62637 5.76540 6.13365 6.16353 6.34783 6.36087 6.76835 7.05576 7.14295 7.84164 8.38401 9.21359 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034608 B = 0.002224 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.859934 B =12588.950852 C =12884.863236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.159 3.841 4 C -0.225 4.225 5 C 0.135 3.865 6 N -0.498 5.498 7 C 0.099 3.901 8 C 0.566 3.434 9 O -0.569 6.569 10 N -0.691 5.691 11 C 0.164 3.836 12 C -0.140 4.140 13 C -0.140 4.140 14 C 0.205 3.795 15 N -0.615 5.615 16 C -0.254 4.254 17 H 0.071 0.929 18 C -0.056 4.056 19 N -0.940 5.940 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.139 3.861 25 C -0.084 4.084 26 C -0.160 4.160 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.183 0.817 31 H 0.201 0.799 32 H 0.418 0.582 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.015 0.985 37 H 0.058 0.942 38 H 0.249 0.751 39 H 0.028 0.972 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.585 -17.279 -4.575 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.105 3.895 4 C -0.246 4.246 5 C -0.024 4.024 6 N -0.214 5.214 7 C -0.037 4.037 8 C 0.352 3.648 9 O -0.448 6.448 10 N -0.341 5.341 11 C 0.041 3.959 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.080 3.920 15 N -0.339 5.339 16 C -0.384 4.384 17 H 0.089 0.911 18 C -0.251 4.251 19 N -0.587 5.587 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.014 3.986 25 C -0.122 4.122 26 C -0.183 4.183 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.200 0.800 31 H 0.218 0.782 32 H 0.255 0.745 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.502 -17.320 -4.479 27.971 hybrid contribution 0.264 0.242 0.419 0.551 sum -21.238 -17.078 -4.060 27.553 Atomic orbital electron populations 1.23550 0.75045 1.06349 1.03218 1.86090 1.24593 1.25626 1.87488 1.19255 0.91506 0.86106 0.92665 1.22807 1.03626 0.91773 1.06356 1.23264 0.88712 0.99135 0.91303 1.67611 1.08976 1.30720 1.14067 1.20651 0.93296 0.89533 1.00214 1.18137 0.86740 0.83467 0.76474 1.90759 1.64445 1.37535 1.52092 1.45913 1.07797 1.08333 1.72070 1.20379 0.79481 0.93582 1.02442 1.20585 1.03532 0.94348 0.95609 1.22972 0.97675 0.97619 0.97807 1.19404 0.97942 0.87363 0.87276 1.44418 1.28978 1.54531 1.05961 1.19554 1.05360 1.17898 0.95620 0.91117 1.25753 1.02569 0.99438 0.97331 1.70172 1.37571 1.45284 1.05631 0.85183 0.80124 0.77309 0.77704 1.19116 1.21929 1.21885 1.21176 0.92507 0.93654 0.91304 1.20722 1.01849 0.95682 0.93994 1.21367 0.93372 0.98968 1.04545 0.90606 0.86060 0.90668 0.79971 0.78222 0.74501 0.91408 0.90642 0.86980 0.96752 0.92387 0.94138 0.95427 0.92118 0.91553 0.89678 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.84 113.37 1.12 1.17 16 2 O -0.33 -4.91 10.51 -90.66 -0.95 -5.86 16 3 C 0.16 2.73 6.73 22.74 0.15 2.88 16 4 C -0.23 -2.58 9.12 22.52 0.21 -2.37 16 5 C 0.13 1.89 11.17 84.74 0.95 2.84 16 6 N -0.50 -10.85 9.54 -185.14 -1.77 -12.61 16 7 C 0.10 2.52 6.75 41.85 0.28 2.80 16 8 C 0.57 16.90 7.81 86.89 0.68 17.57 16 9 O -0.57 -20.12 16.32 -3.75 -0.06 -20.19 16 10 N -0.69 -19.33 5.54 -469.38 -2.60 -21.93 16 11 C 0.16 4.85 5.66 85.63 0.48 5.34 16 12 C -0.14 -4.72 5.22 -15.13 -0.08 -4.80 16 13 C -0.14 -5.39 9.47 27.11 0.26 -5.14 16 14 C 0.21 10.05 5.23 85.42 0.45 10.50 16 15 N -0.61 -31.07 3.01 -703.02 -2.11 -33.19 16 16 C -0.25 -14.06 9.71 84.04 0.82 -13.25 16 17 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 18 C -0.06 -3.16 5.01 84.86 0.43 -2.74 16 19 N -0.94 -55.79 11.08 21.65 0.24 -55.55 16 20 Si 0.97 45.36 29.58 68.60 2.03 47.39 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 C 0.14 5.63 6.59 86.31 0.57 6.20 16 25 C -0.08 -2.79 5.95 29.71 0.18 -2.62 16 26 C -0.16 -3.70 9.60 22.72 0.22 -3.48 16 27 H 0.08 0.14 7.72 -2.38 -0.02 0.12 16 28 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.15 7.70 -2.39 -0.02 0.13 16 30 H 0.18 0.59 6.45 -2.91 -0.02 0.57 16 31 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.42 11.07 7.79 -92.71 -0.72 10.34 16 33 H 0.07 2.06 7.78 -2.39 -0.02 2.04 16 34 H 0.08 2.19 8.11 -2.39 -0.02 2.18 16 35 H 0.11 3.88 7.73 -2.91 -0.02 3.85 16 36 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 3.21 6.41 -2.39 -0.02 3.20 16 38 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.14 3.51 7.64 -2.91 -0.02 3.49 16 Total: -1.00 -72.40 360.98 1.78 -70.62 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.31 Total: 16.41 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 6.69 Total: 14.91 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.24 Total: -123.28 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.01 Total: -26.05 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.40 1.78 -70.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001032292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.562 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds