Wall clock time and date at job start Tue Mar 31 2020 11:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35430 * 116.99408 * 2 1 4 4 N 1.32233 * 119.80119 * 0.02562 * 3 2 1 5 5 C 1.31882 * 121.80036 * 180.02562 * 4 3 2 6 6 C 1.38363 * 121.18592 * 359.97438 * 5 4 3 7 7 C 1.38343 * 119.45279 * 0.27224 * 6 5 4 8 8 C 1.39981 * 118.35004 * 359.50956 * 7 6 5 9 9 C 1.47531 * 120.59766 * 180.26191 * 8 7 6 10 10 O 1.21587 * 120.00204 * 180.21179 * 9 8 7 11 11 N 1.34779 * 119.99445 * 0.20822 * 9 8 7 12 12 C 1.46504 * 119.99314 * 179.97438 * 11 9 8 13 13 C 1.50711 * 109.46802 * 179.97438 * 12 11 9 14 14 C 1.29453 * 117.68723 * 95.00214 * 13 12 11 15 15 C 1.50327 * 123.64481 * 180.85610 * 14 13 12 16 16 N 1.47005 * 109.16642 * 349.02557 * 15 14 13 17 17 C 1.36932 * 121.37501 * 222.96594 * 16 15 14 18 18 H 1.07997 * 120.00206 * 155.97200 * 17 16 15 19 19 C 1.38813 * 120.00186 * 335.96895 * 17 16 15 20 20 N 1.31621 * 119.99709 * 344.52325 * 19 17 16 21 21 Si 1.86799 * 120.00236 * 164.52456 * 19 17 16 22 22 H 1.48502 * 109.47319 * 59.99855 * 21 19 17 23 23 H 1.48500 * 109.47282 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46922 * 300.00124 * 21 19 17 25 25 C 1.47341 * 117.25156 * 42.94609 * 16 15 14 26 26 C 1.49969 * 117.69338 * 274.74600 * 13 12 11 27 27 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47085 * 299.99352 * 1 2 3 29 29 H 1.08998 * 109.47230 * 59.99894 * 1 2 3 30 30 H 1.07997 * 119.41144 * 180.02562 * 5 4 3 31 31 H 1.07995 * 120.27194 * 179.97438 * 6 5 4 32 32 H 1.08007 * 120.81823 * 179.75030 * 7 6 5 33 33 H 0.96998 * 120.00778 * 0.02562 * 11 9 8 34 34 H 1.08997 * 109.47601 * 300.00051 * 12 11 9 35 35 H 1.09000 * 109.47357 * 60.00547 * 12 11 9 36 36 H 1.07996 * 118.17940 * 0.88080 * 14 13 12 37 37 H 1.09005 * 109.52032 * 108.92823 * 15 14 13 38 38 H 1.08997 * 109.52428 * 229.11827 * 15 14 13 39 39 H 0.97000 * 119.99629 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.77970 * 57.80840 * 25 16 15 41 41 H 1.09001 * 109.78135 * 178.61703 * 25 16 15 42 42 H 1.08996 * 109.31044 * 281.28528 * 26 13 12 43 43 H 1.08990 * 109.31703 * 40.71443 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3196 2.3132 0.0005 5 6 1.8769 3.5085 0.0000 6 6 3.2524 3.6577 -0.0005 7 6 4.0586 2.5335 -0.0063 8 6 3.4449 1.2754 -0.0008 9 6 4.2570 0.0437 -0.0008 10 8 3.7125 -1.0435 0.0001 11 7 5.6024 0.1237 -0.0018 12 6 6.4088 -1.0995 -0.0011 13 6 7.8716 -0.7367 -0.0031 14 6 8.4806 -0.6875 1.1382 15 6 9.9306 -0.3226 1.2933 16 7 10.5676 -0.3020 -0.0314 17 6 11.8070 -0.8473 -0.2351 18 1 12.0968 -1.1759 -1.2222 19 6 12.6911 -0.9776 0.8271 20 7 12.4779 -0.3173 1.9456 21 14 14.1833 -2.0902 0.6693 22 1 15.0361 -1.6186 -0.4513 23 1 14.9623 -2.0558 1.9332 24 1 13.7376 -3.4810 0.4008 25 6 9.8171 0.3293 -1.1311 26 6 8.5202 -0.4639 -1.3274 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.2483 4.3867 0.0009 31 1 3.6931 4.6437 -0.0013 32 1 5.1348 2.6243 -0.0108 33 1 6.0367 0.9910 -0.0021 34 1 6.1804 -1.6848 0.8895 35 1 6.1793 -1.6864 -0.8905 36 1 7.9157 -0.9221 2.0282 37 1 10.0111 0.6632 1.7516 38 1 10.4264 -1.0602 1.9244 39 1 13.0955 -0.4086 2.6880 40 1 9.5863 1.3632 -0.8743 41 1 10.4084 0.2990 -2.0462 42 1 8.7430 -1.4096 -1.8213 43 1 7.8377 0.1133 -1.9511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001108048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:14 Heat of formation + Delta-G solvation = 10.022916 kcal Electronic energy + Delta-G solvation = -25768.427372 eV Core-core repulsion = 22008.401934 eV Total energy + Delta-G solvation = -3760.025437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12860 -39.24795 -38.12554 -37.70209 -34.93305 -33.37524 -32.52186 -31.19716 -30.76518 -29.73329 -27.62965 -26.94397 -24.99011 -23.90908 -23.09936 -22.73434 -21.18237 -20.70760 -18.83823 -17.99528 -17.54875 -17.35789 -16.32270 -15.81654 -15.64063 -15.36237 -15.18373 -14.84967 -14.59249 -14.30386 -13.97570 -13.80297 -13.57598 -13.50285 -13.19533 -12.90855 -12.86762 -12.25842 -12.06102 -11.99250 -11.59086 -11.47970 -11.38121 -10.92637 -10.75029 -10.43623 -10.35003 -10.32740 -10.28780 -9.86078 -9.79850 -9.60450 -9.02055 -8.76413 -8.70423 -8.08876 -6.77975 -5.82668 -3.21560 0.39682 0.91828 2.55043 2.81169 2.81761 3.37448 3.43248 3.44444 3.45059 3.59873 3.96068 4.40924 4.47221 4.51701 4.68265 4.86635 5.04957 5.06264 5.08261 5.20420 5.33664 5.38100 5.38479 5.49670 5.56383 5.70491 5.82200 5.93919 5.98497 6.04962 6.14633 6.29948 6.43907 6.52024 6.70146 6.83520 6.95612 7.13620 7.22745 7.29443 7.40394 7.59515 7.70043 7.79449 8.26546 8.35133 9.16540 9.79211 10.37001 11.27797 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.002461 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.714793 B =11375.141159 C =11822.784506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.270 6.270 3 C 0.370 3.630 4 N -0.547 5.547 5 C 0.163 3.837 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.207 4.207 9 C 0.559 3.441 10 O -0.521 6.521 11 N -0.718 5.718 12 C 0.159 3.841 13 C -0.167 4.167 14 C -0.124 4.124 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.164 0.836 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.255 0.745 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 8.104 -3.413 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.174 6.174 3 C 0.190 3.810 4 N -0.272 5.272 5 C 0.007 3.993 6 C -0.240 4.240 7 C -0.033 4.033 8 C -0.213 4.213 9 C 0.345 3.655 10 O -0.398 6.398 11 N -0.370 5.370 12 C 0.037 3.963 13 C -0.168 4.168 14 C -0.144 4.144 15 C 0.069 3.931 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.018 3.982 26 C -0.130 4.130 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.233 0.767 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.333 6.886 -3.269 23.598 hybrid contribution 1.591 0.131 0.079 1.598 sum -20.742 7.016 -3.190 22.128 Atomic orbital electron populations 1.22956 0.77580 1.03318 1.02216 1.86549 1.22279 1.22993 1.85592 1.19874 0.88154 0.85126 0.87839 1.67476 1.40380 0.98704 1.20607 1.22663 0.93118 0.93720 0.89846 1.21958 0.94713 1.00035 1.07284 1.21728 1.00930 0.90530 0.90159 1.20106 0.91647 0.95200 1.14374 1.17791 0.82127 0.88225 0.77356 1.90824 1.71695 1.28358 1.48932 1.46070 1.05298 1.10514 1.75126 1.20467 0.88112 0.85725 1.02004 1.20505 0.93076 1.06969 0.96233 1.23302 0.99773 0.95220 0.96151 1.19764 0.85112 1.00007 0.88222 1.44118 1.16613 1.66483 1.04614 1.19139 0.89960 1.32958 0.95581 0.91396 1.24987 0.97800 0.99693 0.97392 1.69995 1.38345 1.42142 1.05046 0.86318 0.82408 0.80904 0.76850 1.20913 1.21618 1.21051 1.20989 0.91171 0.93591 0.92490 1.20792 0.97823 1.00770 0.93565 0.88354 0.92282 0.92282 0.81860 0.83715 0.83548 0.76683 0.91526 0.91457 0.88737 0.94096 0.88869 0.93529 0.95901 0.92458 0.91665 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.38 101.05 1.05 1.37 16 2 O -0.27 -3.73 8.58 -39.75 -0.34 -4.07 16 3 C 0.37 4.78 7.51 -16.61 -0.12 4.65 16 4 N -0.55 -5.92 9.21 -12.98 -0.12 -6.04 16 5 C 0.16 1.27 11.17 -17.48 -0.20 1.07 16 6 C -0.22 -1.56 10.09 -39.50 -0.40 -1.96 16 7 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 8 C -0.21 -2.57 5.90 -104.69 -0.62 -3.19 16 9 C 0.56 8.29 7.77 -12.47 -0.10 8.19 16 10 O -0.52 -9.59 15.19 -16.48 -0.25 -9.84 16 11 N -0.72 -9.55 5.50 -62.52 -0.34 -9.89 16 12 C 0.16 2.40 5.66 -5.19 -0.03 2.37 16 13 C -0.17 -2.80 5.22 -100.98 -0.53 -3.33 16 14 C -0.12 -2.29 9.47 -35.78 -0.34 -2.63 16 15 C 0.19 4.47 5.23 -5.10 -0.03 4.44 16 16 N -0.60 -14.52 3.01 -173.56 -0.52 -15.04 16 17 C -0.25 -6.66 9.71 -15.06 -0.15 -6.81 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 19 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 20 N -0.91 -25.81 11.08 55.49 0.61 -25.20 16 21 Si 0.91 21.50 29.58 -169.99 -5.03 16.47 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.87 6.59 -3.44 -0.02 2.85 16 26 C -0.09 -1.53 5.95 -28.09 -0.17 -1.70 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.15 0.99 6.52 -52.48 -0.34 0.65 16 33 H 0.40 4.44 6.56 -40.82 -0.27 4.17 16 34 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 35 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.09 1.59 7.73 -52.49 -0.41 1.18 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -33.17 359.05 -8.62 -41.79 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.94 Total: 1.62 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.10 Total: 4.79 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.37 Total: -56.17 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.59 Total: -13.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.17 -8.62 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001108048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.811 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds