Wall clock time and date at job start Tue Mar 31 2020 11:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35430 * 116.99408 * 2 1 4 4 N 1.32233 * 119.80119 * 0.02562 * 3 2 1 5 5 C 1.31882 * 121.80036 * 180.02562 * 4 3 2 6 6 C 1.38363 * 121.18592 * 359.97438 * 5 4 3 7 7 C 1.38343 * 119.45279 * 0.27224 * 6 5 4 8 8 C 1.39981 * 118.35004 * 359.50956 * 7 6 5 9 9 C 1.47531 * 120.59766 * 180.26191 * 8 7 6 10 10 O 1.21587 * 120.00204 * 180.21179 * 9 8 7 11 11 N 1.34779 * 119.99445 * 0.20822 * 9 8 7 12 12 C 1.46504 * 119.99314 * 179.97438 * 11 9 8 13 13 C 1.50711 * 109.46802 * 179.97438 * 12 11 9 14 14 C 1.29453 * 117.68723 * 95.00214 * 13 12 11 15 15 C 1.50327 * 123.64481 * 180.85610 * 14 13 12 16 16 N 1.47005 * 109.16642 * 349.02557 * 15 14 13 17 17 C 1.36932 * 121.37501 * 222.96594 * 16 15 14 18 18 H 1.07997 * 120.00206 * 155.97200 * 17 16 15 19 19 C 1.38813 * 120.00186 * 335.96895 * 17 16 15 20 20 N 1.31621 * 119.99709 * 344.52325 * 19 17 16 21 21 Si 1.86799 * 120.00236 * 164.52456 * 19 17 16 22 22 H 1.48502 * 109.47319 * 59.99855 * 21 19 17 23 23 H 1.48500 * 109.47282 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46922 * 300.00124 * 21 19 17 25 25 C 1.47341 * 117.25156 * 42.94609 * 16 15 14 26 26 C 1.49969 * 117.69338 * 274.74600 * 13 12 11 27 27 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47085 * 299.99352 * 1 2 3 29 29 H 1.08998 * 109.47230 * 59.99894 * 1 2 3 30 30 H 1.07997 * 119.41144 * 180.02562 * 5 4 3 31 31 H 1.07995 * 120.27194 * 179.97438 * 6 5 4 32 32 H 1.08007 * 120.81823 * 179.75030 * 7 6 5 33 33 H 0.96998 * 120.00778 * 0.02562 * 11 9 8 34 34 H 1.08997 * 109.47601 * 300.00051 * 12 11 9 35 35 H 1.09000 * 109.47357 * 60.00547 * 12 11 9 36 36 H 1.07996 * 118.17940 * 0.88080 * 14 13 12 37 37 H 1.09005 * 109.52032 * 108.92823 * 15 14 13 38 38 H 1.08997 * 109.52428 * 229.11827 * 15 14 13 39 39 H 0.97000 * 119.99629 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.77970 * 57.80840 * 25 16 15 41 41 H 1.09001 * 109.78135 * 178.61703 * 25 16 15 42 42 H 1.08996 * 109.31044 * 281.28528 * 26 13 12 43 43 H 1.08990 * 109.31703 * 40.71443 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3196 2.3132 0.0005 5 6 1.8769 3.5085 0.0000 6 6 3.2524 3.6577 -0.0005 7 6 4.0586 2.5335 -0.0063 8 6 3.4449 1.2754 -0.0008 9 6 4.2570 0.0437 -0.0008 10 8 3.7125 -1.0435 0.0001 11 7 5.6024 0.1237 -0.0018 12 6 6.4088 -1.0995 -0.0011 13 6 7.8716 -0.7367 -0.0031 14 6 8.4806 -0.6875 1.1382 15 6 9.9306 -0.3226 1.2933 16 7 10.5676 -0.3020 -0.0314 17 6 11.8070 -0.8473 -0.2351 18 1 12.0968 -1.1759 -1.2222 19 6 12.6911 -0.9776 0.8271 20 7 12.4779 -0.3173 1.9456 21 14 14.1833 -2.0902 0.6693 22 1 15.0361 -1.6186 -0.4513 23 1 14.9623 -2.0558 1.9332 24 1 13.7376 -3.4810 0.4008 25 6 9.8171 0.3293 -1.1311 26 6 8.5202 -0.4639 -1.3274 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.2483 4.3867 0.0009 31 1 3.6931 4.6437 -0.0013 32 1 5.1348 2.6243 -0.0108 33 1 6.0367 0.9910 -0.0021 34 1 6.1804 -1.6848 0.8895 35 1 6.1793 -1.6864 -0.8905 36 1 7.9157 -0.9221 2.0282 37 1 10.0111 0.6632 1.7516 38 1 10.4264 -1.0602 1.9244 39 1 13.0955 -0.4086 2.6880 40 1 9.5863 1.3632 -0.8743 41 1 10.4084 0.2990 -2.0462 42 1 8.7430 -1.4096 -1.8213 43 1 7.8377 0.1133 -1.9511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001108048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:13 Heat of formation + Delta-G solvation = -12.523773 kcal Electronic energy + Delta-G solvation = -25769.405069 eV Core-core repulsion = 22008.401934 eV Total energy + Delta-G solvation = -3761.003135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94212 -40.38052 -39.23549 -38.90448 -36.40086 -34.70014 -33.69506 -32.48698 -31.82339 -31.38907 -28.75452 -28.10098 -26.30272 -25.12798 -24.35448 -23.84989 -22.81417 -21.78383 -19.72533 -19.44704 -18.82253 -18.15839 -17.37627 -17.16098 -16.99304 -16.71131 -16.14311 -16.08268 -15.75626 -15.47941 -15.26594 -15.15374 -15.02292 -14.58616 -14.28626 -14.12690 -13.84933 -13.59719 -13.54016 -13.26405 -12.91112 -12.77117 -12.70875 -12.57961 -12.25302 -12.20796 -12.10234 -11.69984 -11.31171 -11.22747 -11.04771 -10.69975 -10.65664 -10.15022 -9.65408 -9.55068 -8.73897 -7.87734 -5.28560 -0.35607 0.23106 1.16599 1.47605 1.50431 1.56469 1.85151 2.07999 2.32641 2.51969 2.79738 3.27768 3.29478 3.62291 3.70890 3.78063 3.90355 3.97757 3.98956 4.24071 4.39130 4.39583 4.44450 4.47400 4.55037 4.67163 4.70628 4.75606 4.85180 4.89247 4.93062 5.09038 5.11723 5.22936 5.33440 5.40680 5.42845 5.49356 5.62305 5.77472 6.16678 6.19563 6.34881 6.50286 6.73872 7.14570 7.19178 7.84831 8.38150 9.20629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.002461 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.714793 B =11375.141159 C =11822.784506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.348 3.652 4 N -0.560 5.560 5 C 0.164 3.836 6 C -0.206 4.206 7 C -0.005 4.005 8 C -0.235 4.235 9 C 0.559 3.441 10 O -0.566 6.566 11 N -0.707 5.707 12 C 0.169 3.831 13 C -0.138 4.138 14 C -0.140 4.140 15 C 0.205 3.795 16 N -0.615 5.615 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.282 1.282 25 C 0.139 3.861 26 C -0.085 4.085 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.203 0.797 31 H 0.184 0.816 32 H 0.168 0.832 33 H 0.411 0.589 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.017 0.983 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.394 9.862 -4.631 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.169 3.831 4 N -0.285 5.285 5 C 0.008 3.992 6 C -0.225 4.225 7 C -0.030 4.030 8 C -0.241 4.241 9 C 0.347 3.653 10 O -0.446 6.446 11 N -0.360 5.360 12 C 0.046 3.954 13 C -0.139 4.139 14 C -0.161 4.161 15 C 0.080 3.920 16 N -0.340 5.340 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.208 1.208 25 C 0.014 3.986 26 C -0.123 4.123 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.219 0.781 31 H 0.201 0.799 32 H 0.186 0.814 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.466 8.680 -4.515 25.424 hybrid contribution 1.855 -0.272 0.387 1.914 sum -21.611 8.408 -4.128 23.554 Atomic orbital electron populations 1.23110 0.76065 1.04395 1.02612 1.86495 1.24086 1.24298 1.85975 1.20099 0.88591 0.85482 0.88976 1.67539 1.40608 0.99177 1.21162 1.23448 0.94328 0.93726 0.87700 1.22401 0.94265 1.01037 1.04845 1.22045 1.02231 0.89673 0.89094 1.20036 0.91425 0.95352 1.17326 1.18175 0.82283 0.88610 0.76200 1.90794 1.72478 1.30204 1.51114 1.45856 1.04903 1.10467 1.74734 1.20237 0.86839 0.86445 1.01879 1.20582 0.93765 1.04031 0.95538 1.22965 0.97349 0.97948 0.97798 1.19404 0.87462 0.97819 0.87285 1.44402 1.16487 1.67080 1.05983 1.19473 0.91014 1.32597 0.95644 0.91244 1.25715 1.00596 1.01195 0.97333 1.70151 1.39223 1.43588 1.05568 0.85351 0.79428 0.79128 0.76618 1.20025 1.22079 1.20803 1.21183 0.92035 0.94232 0.91133 1.20735 0.96906 1.00692 0.93990 0.87033 0.91877 0.91771 0.78080 0.79918 0.81447 0.75194 0.92111 0.91353 0.87084 0.96525 0.92587 0.94124 0.94974 0.92274 0.91940 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.38 113.37 1.18 1.79 16 2 O -0.30 -8.55 8.58 -66.44 -0.57 -9.12 16 3 C 0.35 8.80 7.51 85.13 0.64 9.44 16 4 N -0.56 -11.17 9.21 -307.99 -2.84 -14.00 16 5 C 0.16 1.97 11.17 84.72 0.95 2.92 16 6 C -0.21 -2.05 10.09 22.32 0.23 -1.83 16 7 C 0.00 -0.07 9.64 22.72 0.22 0.15 16 8 C -0.24 -5.57 5.90 -19.91 -0.12 -5.69 16 9 C 0.56 16.23 7.77 86.69 0.67 16.90 16 10 O -0.57 -21.11 15.19 16.83 0.26 -20.85 16 11 N -0.71 -17.54 5.50 -469.99 -2.59 -20.13 16 12 C 0.17 4.82 5.66 85.64 0.48 5.30 16 13 C -0.14 -4.40 5.22 -15.13 -0.08 -4.48 16 14 C -0.14 -5.13 9.47 27.11 0.26 -4.88 16 15 C 0.21 9.70 5.23 85.42 0.45 10.15 16 16 N -0.62 -30.16 3.01 -703.02 -2.11 -32.27 16 17 C -0.26 -13.97 9.71 84.03 0.82 -13.15 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 19 C -0.05 -2.96 5.01 84.86 0.43 -2.54 16 20 N -0.94 -54.74 11.08 21.65 0.24 -54.50 16 21 Si 0.97 44.72 29.58 68.60 2.03 46.75 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.14 5.35 6.59 86.31 0.57 5.92 16 26 C -0.08 -2.65 5.95 29.71 0.18 -2.47 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.20 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.17 1.64 6.52 -2.91 -0.02 1.62 16 33 H 0.41 8.04 6.56 -92.71 -0.61 7.43 16 34 H 0.06 1.85 7.78 -2.39 -0.02 1.83 16 35 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 36 H 0.11 3.68 7.73 -2.91 -0.02 3.65 16 37 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 3.03 6.41 -2.39 -0.02 3.02 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -74.98 359.05 1.70 -73.28 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.42 Total: 13.30 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.86 Total: 17.54 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -7.29 Total: -120.90 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.31 Total: -29.97 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.98 1.70 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001108048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.759 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds