Wall clock time and date at job start Tue Mar 31 2020 11:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34674 * 119.70746 * 2 1 4 4 O 1.21968 * 119.95137 * 359.97030 * 3 2 1 5 5 C 1.41237 * 120.08747 * 180.25100 * 3 2 1 6 6 C 1.36107 * 119.51089 * 359.74474 * 5 3 2 7 7 C 1.40409 * 119.41621 * 359.97438 * 6 5 3 8 8 C 1.36292 * 119.90538 * 0.02562 * 7 6 5 9 9 C 1.47882 * 119.75589 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00065 * 173.61619 * 9 8 7 11 11 N 1.34774 * 120.00148 * 353.60932 * 9 8 7 12 12 C 1.46495 * 120.00023 * 180.02562 * 11 9 8 13 13 C 1.50709 * 109.47135 * 179.97438 * 12 11 9 14 14 C 1.29459 * 117.69117 * 94.99998 * 13 12 11 15 15 C 1.50324 * 123.64952 * 180.85860 * 14 13 12 16 16 N 1.47006 * 109.16602 * 349.02425 * 15 14 13 17 17 C 1.36932 * 121.37643 * 222.96896 * 16 15 14 18 18 H 1.08002 * 120.00276 * 153.77544 * 17 16 15 19 19 C 1.38812 * 119.99735 * 333.77632 * 17 16 15 20 20 N 1.31621 * 120.00136 * 348.26240 * 19 17 16 21 21 Si 1.86806 * 119.99978 * 168.26487 * 19 17 16 22 22 H 1.48495 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46799 * 120.00086 * 21 19 17 24 24 H 1.48499 * 109.47277 * 239.99881 * 21 19 17 25 25 C 1.47342 * 117.24713 * 42.94572 * 16 15 14 26 26 C 1.49963 * 117.69369 * 274.74282 * 13 12 11 27 27 H 1.08998 * 109.47220 * 264.33347 * 1 2 3 28 28 H 1.09000 * 109.46576 * 24.33257 * 1 2 3 29 29 H 1.08998 * 109.47073 * 144.33131 * 1 2 3 30 30 H 1.08001 * 120.24250 * 179.76037 * 5 3 2 31 31 H 1.07995 * 120.29148 * 179.97438 * 6 5 3 32 32 H 1.08000 * 120.04586 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99814 * 0.02562 * 11 9 8 34 34 H 1.08995 * 109.47490 * 299.99979 * 12 11 9 35 35 H 1.09004 * 109.47489 * 60.00143 * 12 11 9 36 36 H 1.08002 * 118.17203 * 0.88349 * 14 13 12 37 37 H 1.08996 * 109.51712 * 108.93336 * 15 14 13 38 38 H 1.08997 * 109.51841 * 229.11822 * 15 14 13 39 39 H 0.97002 * 120.00184 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.77912 * 57.81243 * 25 16 15 41 41 H 1.09007 * 109.77767 * 178.61820 * 25 16 15 42 42 H 1.09002 * 109.31422 * 281.28674 * 26 13 12 43 43 H 1.08993 * 109.31845 * 40.71446 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1697 0.0000 4 8 1.5163 2.2224 -0.0005 5 6 3.5448 1.1791 -0.0054 6 6 4.2231 -0.0009 -0.0052 7 6 3.5064 -1.2083 0.0008 8 6 2.1436 -1.1896 0.0059 9 6 1.3921 -2.4632 0.0116 10 8 0.1828 -2.4547 0.1332 11 7 2.0481 -3.6333 -0.1181 12 6 1.3036 -4.8950 -0.1129 13 6 2.2638 -6.0456 -0.2726 14 6 2.6844 -6.6317 0.8023 15 6 3.6564 -7.7784 0.7999 16 7 3.8217 -8.2680 -0.5763 17 6 3.8520 -9.6078 -0.8576 18 1 3.5528 -9.9618 -1.8331 19 6 4.2673 -10.5111 0.1112 20 7 4.8470 -10.0771 1.2103 21 14 4.0035 -12.3426 -0.1450 22 1 3.3352 -12.5683 -1.4517 23 1 5.3155 -13.0381 -0.1326 24 1 3.1495 -12.8771 0.9460 25 6 3.9528 -7.2576 -1.6407 26 6 2.6599 -6.4346 -1.6657 27 1 -0.3633 -0.1015 1.0226 28 1 -0.3632 0.9364 -0.4234 29 1 -0.3633 -0.8349 -0.5992 30 1 4.0825 2.1157 -0.0093 31 1 5.3030 -0.0084 -0.0097 32 1 4.0343 -2.1505 0.0005 33 1 3.0132 -3.6401 -0.2148 34 1 0.7677 -4.9968 0.8307 35 1 0.5910 -4.8998 -0.9378 36 1 2.3162 -6.2773 1.7538 37 1 4.6188 -7.4408 1.1845 38 1 3.2733 -8.5819 1.4288 39 1 5.1369 -10.7083 1.8875 40 1 4.8034 -6.6091 -1.4308 41 1 4.0929 -7.7511 -2.6025 42 1 1.8615 -7.0243 -2.1161 43 1 2.8188 -5.5348 -2.2599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001138385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:03 Heat of formation + Delta-G solvation = 17.226221 kcal Electronic energy + Delta-G solvation = -25893.394903 eV Core-core repulsion = 22133.681824 eV Total energy + Delta-G solvation = -3759.713078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85302 -39.81667 -37.96632 -37.00117 -35.62801 -34.55497 -33.17045 -31.34675 -30.41205 -29.76428 -27.86317 -27.12517 -25.23313 -24.05873 -22.94029 -22.81011 -21.38996 -21.14830 -18.65020 -17.74361 -17.67633 -17.28886 -16.59841 -16.12975 -15.96882 -15.63828 -15.36709 -15.00253 -14.93898 -14.41930 -13.97933 -13.82067 -13.55098 -13.36937 -13.10631 -13.05148 -12.73039 -12.47075 -12.38476 -12.21377 -12.02991 -11.67967 -11.48736 -10.98188 -10.84512 -10.56289 -10.48013 -10.46627 -10.37939 -10.00180 -9.93635 -9.71783 -9.32276 -8.80042 -8.37740 -8.21265 -6.81832 -5.88893 -3.31036 0.06384 1.29742 2.02614 2.47164 2.52425 3.12533 3.31490 3.32741 3.39567 3.41129 4.10155 4.24809 4.41033 4.47380 4.77435 4.81192 4.96308 5.18053 5.20584 5.23939 5.31044 5.44983 5.46698 5.56810 5.63076 5.65658 5.74060 5.79350 5.93505 5.98785 6.02844 6.13455 6.20310 6.38049 6.61058 6.66301 6.75435 7.01845 7.11473 7.13167 7.23515 7.61848 7.65350 7.71803 7.74748 8.30005 9.10661 9.72112 10.30240 11.21448 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.002433 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.305236 B =11504.083606 C =11885.500471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.475 5.475 3 C 0.511 3.489 4 O -0.549 6.549 5 C -0.219 4.219 6 C -0.026 4.026 7 C -0.182 4.182 8 C 0.120 3.880 9 C 0.550 3.450 10 O -0.525 6.525 11 N -0.698 5.698 12 C 0.157 3.843 13 C -0.172 4.172 14 C -0.117 4.117 15 C 0.193 3.807 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.069 0.931 19 C 0.000 4.000 20 N -0.911 5.911 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.144 3.856 26 C -0.091 4.091 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 16.945 -2.149 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.186 5.186 3 C 0.312 3.688 4 O -0.432 6.432 5 C -0.241 4.241 6 C -0.047 4.047 7 C -0.207 4.207 8 C 0.009 3.991 9 C 0.335 3.665 10 O -0.404 6.404 11 N -0.350 5.350 12 C 0.035 3.965 13 C -0.173 4.173 14 C -0.138 4.138 15 C 0.068 3.932 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.556 5.556 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.017 3.983 26 C -0.130 4.130 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.430 17.467 -1.949 17.907 hybrid contribution 0.423 -1.002 0.072 1.090 sum -3.007 16.465 -1.877 16.843 Atomic orbital electron populations 1.22585 0.75934 1.05487 1.04900 1.45446 1.10025 1.05076 1.58103 1.17357 0.89329 0.82536 0.79548 1.90944 1.69979 1.29091 1.53142 1.22409 0.92611 1.00399 1.08670 1.21431 1.01222 0.91318 0.90752 1.20973 0.91131 1.00414 1.08229 1.20178 0.92471 0.86853 0.99596 1.17883 0.87072 0.83336 0.78195 1.90774 1.13353 1.86757 1.49493 1.46113 1.11724 1.05275 1.71854 1.20611 0.93478 0.80077 1.02304 1.20462 1.02104 0.98251 0.96458 1.23375 0.96395 0.97533 0.96523 1.19792 0.93684 0.92077 0.87660 1.44110 1.84559 1.01615 1.01563 1.19216 1.37395 0.81474 0.99556 0.91354 1.25065 0.98375 0.98367 0.97951 1.69973 1.42613 1.33278 1.09719 0.86158 0.77450 0.85165 0.77628 1.20272 1.21644 1.21562 1.20998 0.92987 0.91171 0.93155 1.20798 1.00478 0.98998 0.92700 0.90497 0.89529 0.86953 0.82878 0.83726 0.83077 0.75741 0.90984 0.90921 0.88670 0.93888 0.88740 0.93566 0.95811 0.92396 0.91636 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 9.13 59.85 0.55 1.11 16 2 N -0.48 -5.48 3.02 -122.80 -0.37 -5.85 16 3 C 0.51 6.39 7.43 -15.17 -0.11 6.27 16 4 O -0.55 -8.67 16.56 4.95 0.08 -8.59 16 5 C -0.22 -1.98 10.00 -39.21 -0.39 -2.38 16 6 C -0.03 -0.17 10.08 -39.53 -0.40 -0.57 16 7 C -0.18 -1.36 9.49 -39.47 -0.37 -1.74 16 8 C 0.12 1.21 6.63 -82.33 -0.55 0.66 16 9 C 0.55 6.18 7.65 -12.31 -0.09 6.08 16 10 O -0.53 -7.19 13.19 5.32 0.07 -7.12 16 11 N -0.70 -7.17 5.49 -62.42 -0.34 -7.51 16 12 C 0.16 1.93 5.66 -5.19 -0.03 1.90 16 13 C -0.17 -2.53 5.22 -100.99 -0.53 -3.06 16 14 C -0.12 -1.97 9.47 -35.78 -0.34 -2.31 16 15 C 0.19 4.19 5.19 -5.10 -0.03 4.16 16 16 N -0.60 -13.82 3.00 -173.56 -0.52 -14.34 16 17 C -0.25 -6.42 9.71 -15.06 -0.15 -6.56 16 18 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 19 C 0.00 0.01 5.08 -17.43 -0.09 -0.08 16 20 N -0.91 -25.03 11.01 55.49 0.61 -24.42 16 21 Si 0.91 20.90 29.57 -169.99 -5.03 15.87 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.14 2.68 6.59 -3.43 -0.02 2.65 16 26 C -0.09 -1.38 5.95 -28.09 -0.17 -1.55 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.95 7.23 -51.93 -0.38 0.57 16 29 H 0.11 1.26 5.62 -51.93 -0.29 0.97 16 30 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.15 0.78 6.34 -52.49 -0.33 0.45 16 33 H 0.41 3.42 6.48 -40.82 -0.26 3.15 16 34 H 0.07 0.92 7.78 -51.93 -0.40 0.51 16 35 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.10 1.41 7.73 -52.49 -0.41 1.00 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.34 6.46 -51.93 -0.34 2.00 16 39 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -31.64 353.14 -8.64 -40.29 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.75 Total: 1.74 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.72 Total: 4.61 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.62 Total: -52.11 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.15 Total: -15.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.64 -8.64 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001138385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.513 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds