Wall clock time and date at job start Tue Mar 31 2020 11:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34674 * 119.70746 * 2 1 4 4 O 1.21968 * 119.95137 * 359.97030 * 3 2 1 5 5 C 1.41237 * 120.08747 * 180.25100 * 3 2 1 6 6 C 1.36107 * 119.51089 * 359.74474 * 5 3 2 7 7 C 1.40409 * 119.41621 * 359.97438 * 6 5 3 8 8 C 1.36292 * 119.90538 * 0.02562 * 7 6 5 9 9 C 1.47882 * 119.75589 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00065 * 173.61619 * 9 8 7 11 11 N 1.34774 * 120.00148 * 353.60932 * 9 8 7 12 12 C 1.46495 * 120.00023 * 180.02562 * 11 9 8 13 13 C 1.50709 * 109.47135 * 179.97438 * 12 11 9 14 14 C 1.29459 * 117.69117 * 94.99998 * 13 12 11 15 15 C 1.50324 * 123.64952 * 180.85860 * 14 13 12 16 16 N 1.47006 * 109.16602 * 349.02425 * 15 14 13 17 17 C 1.36932 * 121.37643 * 222.96896 * 16 15 14 18 18 H 1.08002 * 120.00276 * 153.77544 * 17 16 15 19 19 C 1.38812 * 119.99735 * 333.77632 * 17 16 15 20 20 N 1.31621 * 120.00136 * 348.26240 * 19 17 16 21 21 Si 1.86806 * 119.99978 * 168.26487 * 19 17 16 22 22 H 1.48495 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46799 * 120.00086 * 21 19 17 24 24 H 1.48499 * 109.47277 * 239.99881 * 21 19 17 25 25 C 1.47342 * 117.24713 * 42.94572 * 16 15 14 26 26 C 1.49963 * 117.69369 * 274.74282 * 13 12 11 27 27 H 1.08998 * 109.47220 * 264.33347 * 1 2 3 28 28 H 1.09000 * 109.46576 * 24.33257 * 1 2 3 29 29 H 1.08998 * 109.47073 * 144.33131 * 1 2 3 30 30 H 1.08001 * 120.24250 * 179.76037 * 5 3 2 31 31 H 1.07995 * 120.29148 * 179.97438 * 6 5 3 32 32 H 1.08000 * 120.04586 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99814 * 0.02562 * 11 9 8 34 34 H 1.08995 * 109.47490 * 299.99979 * 12 11 9 35 35 H 1.09004 * 109.47489 * 60.00143 * 12 11 9 36 36 H 1.08002 * 118.17203 * 0.88349 * 14 13 12 37 37 H 1.08996 * 109.51712 * 108.93336 * 15 14 13 38 38 H 1.08997 * 109.51841 * 229.11822 * 15 14 13 39 39 H 0.97002 * 120.00184 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.77912 * 57.81243 * 25 16 15 41 41 H 1.09007 * 109.77767 * 178.61820 * 25 16 15 42 42 H 1.09002 * 109.31422 * 281.28674 * 26 13 12 43 43 H 1.08993 * 109.31845 * 40.71446 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1324 1.1697 0.0000 4 8 1.5163 2.2224 -0.0005 5 6 3.5448 1.1791 -0.0054 6 6 4.2231 -0.0009 -0.0052 7 6 3.5064 -1.2083 0.0008 8 6 2.1436 -1.1896 0.0059 9 6 1.3921 -2.4632 0.0116 10 8 0.1828 -2.4547 0.1332 11 7 2.0481 -3.6333 -0.1181 12 6 1.3036 -4.8950 -0.1129 13 6 2.2638 -6.0456 -0.2726 14 6 2.6844 -6.6317 0.8023 15 6 3.6564 -7.7784 0.7999 16 7 3.8217 -8.2680 -0.5763 17 6 3.8520 -9.6078 -0.8576 18 1 3.5528 -9.9618 -1.8331 19 6 4.2673 -10.5111 0.1112 20 7 4.8470 -10.0771 1.2103 21 14 4.0035 -12.3426 -0.1450 22 1 3.3352 -12.5683 -1.4517 23 1 5.3155 -13.0381 -0.1326 24 1 3.1495 -12.8771 0.9460 25 6 3.9528 -7.2576 -1.6407 26 6 2.6599 -6.4346 -1.6657 27 1 -0.3633 -0.1015 1.0226 28 1 -0.3632 0.9364 -0.4234 29 1 -0.3633 -0.8349 -0.5992 30 1 4.0825 2.1157 -0.0093 31 1 5.3030 -0.0084 -0.0097 32 1 4.0343 -2.1505 0.0005 33 1 3.0132 -3.6401 -0.2148 34 1 0.7677 -4.9968 0.8307 35 1 0.5910 -4.8998 -0.9378 36 1 2.3162 -6.2773 1.7538 37 1 4.6188 -7.4408 1.1845 38 1 3.2733 -8.5819 1.4288 39 1 5.1369 -10.7083 1.8875 40 1 4.8034 -6.6091 -1.4308 41 1 4.0929 -7.7511 -2.6025 42 1 1.8615 -7.0243 -2.1161 43 1 2.8188 -5.5348 -2.2599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001138385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:02 Heat of formation + Delta-G solvation = -3.258480 kcal Electronic energy + Delta-G solvation = -25894.283186 eV Core-core repulsion = 22133.681824 eV Total energy + Delta-G solvation = -3760.601362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.66547 -40.75041 -39.34212 -37.89659 -36.74075 -35.50287 -34.57393 -32.81627 -31.54301 -31.16509 -28.70408 -28.47894 -26.39297 -25.30362 -24.32579 -23.66995 -22.82437 -22.12642 -19.65759 -19.28177 -18.51744 -18.04837 -17.47647 -17.38756 -17.02187 -16.94698 -16.60353 -16.18193 -15.75021 -15.56712 -15.40130 -15.18423 -14.95929 -14.57061 -14.17580 -13.97621 -13.84883 -13.61816 -13.39137 -13.24894 -13.14940 -12.91338 -12.81722 -12.76883 -12.59593 -12.17586 -12.06208 -11.68776 -11.46798 -11.23004 -11.16511 -10.89941 -10.68481 -10.24176 -9.63367 -9.17586 -8.68322 -7.86455 -5.29886 -0.65421 0.57763 1.04467 1.46995 1.48621 1.50011 1.58968 1.66035 2.17164 2.52222 2.57172 3.31711 3.32243 3.55278 3.65855 3.84243 3.89845 4.00807 4.11583 4.22470 4.35303 4.42790 4.47284 4.59100 4.64496 4.73144 4.78628 4.85138 4.88710 4.95506 4.97108 5.13723 5.16897 5.21697 5.28201 5.38705 5.44763 5.54889 5.64558 5.79474 5.86862 6.20136 6.31834 6.38078 6.80453 6.91659 7.17302 7.87030 8.39865 9.21573 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.002433 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.305236 B =11504.083606 C =11885.500471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.481 5.481 3 C 0.495 3.505 4 O -0.600 6.600 5 C -0.229 4.229 6 C -0.005 4.005 7 C -0.155 4.155 8 C 0.094 3.906 9 C 0.556 3.444 10 O -0.554 6.554 11 N -0.687 5.687 12 C 0.168 3.832 13 C -0.141 4.141 14 C -0.136 4.136 15 C 0.203 3.797 16 N -0.616 5.616 17 C -0.253 4.253 18 H 0.068 0.932 19 C -0.052 4.052 20 N -0.938 5.938 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.138 3.862 26 C -0.085 4.085 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.167 0.833 31 H 0.189 0.811 32 H 0.183 0.817 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.017 0.983 38 H 0.054 0.946 39 H 0.249 0.751 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 17.588 -3.245 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.192 5.192 3 C 0.298 3.702 4 O -0.487 6.487 5 C -0.251 4.251 6 C -0.026 4.026 7 C -0.180 4.180 8 C -0.016 4.016 9 C 0.341 3.659 10 O -0.435 6.435 11 N -0.339 5.339 12 C 0.045 3.955 13 C -0.142 4.142 14 C -0.156 4.156 15 C 0.078 3.922 16 N -0.341 5.341 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.247 4.247 20 N -0.585 5.585 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.012 3.988 26 C -0.124 4.124 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.129 0.871 30 H 0.185 0.815 31 H 0.206 0.794 32 H 0.200 0.800 33 H 0.257 0.743 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.486 18.099 -3.074 18.526 hybrid contribution 0.207 -1.191 0.334 1.254 sum -2.279 16.908 -2.740 17.279 Atomic orbital electron populations 1.22473 0.76466 1.04941 1.04585 1.45446 1.10018 1.05575 1.58158 1.17956 0.90673 0.82078 0.79462 1.90908 1.71053 1.30641 1.56088 1.22556 0.90869 1.02289 1.09378 1.21882 1.03185 0.89745 0.87832 1.21493 0.90037 1.02170 1.04252 1.20185 0.93309 0.85674 1.02414 1.17975 0.86708 0.83738 0.77432 1.90772 1.14722 1.87133 1.50827 1.45837 1.12174 1.04281 1.71647 1.20370 0.92755 0.79726 1.02608 1.20551 1.00363 0.97733 0.95534 1.22998 0.97299 0.96901 0.98446 1.19423 0.93752 0.92530 0.86470 1.44399 1.84900 1.01699 1.03058 1.19515 1.36240 0.83237 0.99373 0.91412 1.25748 0.98984 1.01920 0.98080 1.70127 1.44024 1.34003 1.10393 0.85239 0.76914 0.80905 0.77610 1.19222 1.21997 1.21993 1.21204 0.95181 0.90695 0.91683 1.20739 0.98264 0.99917 0.93477 0.90814 0.90231 0.87115 0.81537 0.79363 0.79951 0.74330 0.91085 0.90380 0.86681 0.96499 0.92737 0.94178 0.94863 0.92578 0.92018 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 9.13 127.77 1.17 2.44 16 2 N -0.48 -10.70 3.02 -660.60 -1.99 -12.70 16 3 C 0.49 12.11 7.43 84.99 0.63 12.74 16 4 O -0.60 -19.54 16.56 -5.21 -0.09 -19.63 16 5 C -0.23 -3.59 10.00 22.51 0.23 -3.36 16 6 C -0.01 -0.05 10.08 22.30 0.22 0.18 16 7 C -0.16 -1.61 9.49 22.34 0.21 -1.40 16 8 C 0.09 1.64 6.63 40.45 0.27 1.91 16 9 C 0.56 11.02 7.65 86.80 0.66 11.69 16 10 O -0.55 -14.36 13.19 -3.87 -0.05 -14.41 16 11 N -0.69 -11.49 5.49 -469.67 -2.58 -14.07 16 12 C 0.17 3.55 5.66 85.64 0.48 4.03 16 13 C -0.14 -3.73 5.22 -15.14 -0.08 -3.81 16 14 C -0.14 -4.35 9.47 27.10 0.26 -4.09 16 15 C 0.20 8.96 5.19 85.42 0.44 9.40 16 16 N -0.62 -28.52 3.00 -703.03 -2.11 -30.63 16 17 C -0.25 -13.23 9.71 84.03 0.82 -12.41 16 18 H 0.07 3.46 7.86 -2.91 -0.02 3.44 16 19 C -0.05 -2.81 5.08 84.86 0.43 -2.38 16 20 N -0.94 -53.03 11.01 21.65 0.24 -52.80 16 21 Si 0.96 43.45 29.57 68.60 2.03 45.48 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 C 0.14 4.86 6.59 86.32 0.57 5.43 16 26 C -0.09 -2.31 5.95 29.71 0.18 -2.13 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.85 7.23 -2.39 -0.02 1.84 16 29 H 0.11 2.51 5.62 -2.39 -0.01 2.50 16 30 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 32 H 0.18 0.75 6.34 -2.91 -0.02 0.73 16 33 H 0.42 4.99 6.48 -92.71 -0.60 4.39 16 34 H 0.07 1.60 7.78 -2.39 -0.02 1.58 16 35 H 0.08 1.66 8.11 -2.38 -0.02 1.64 16 36 H 0.12 3.21 7.73 -2.91 -0.02 3.19 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 2.80 6.46 -2.39 -0.02 2.79 16 39 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.97 7.96 -2.38 -0.02 1.96 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -72.51 353.14 2.38 -70.14 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.44 Total: 10.38 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.49 Total: 18.22 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.44 Total: -110.19 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.14 Total: -34.04 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.51 2.38 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001138385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.878 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds