Wall clock time and date at job start Tue Mar 31 2020 11:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35666 * 116.99904 * 2 1 4 4 C 1.39285 * 119.61540 * 179.72987 * 3 2 1 5 5 C 1.38325 * 119.30437 * 179.75128 * 4 3 2 6 6 C 1.38782 * 118.55995 * 0.51417 * 5 4 3 7 7 C 1.39124 * 119.18866 * 359.72588 * 6 5 4 8 8 C 1.48151 * 119.69428 * 180.02562 * 7 6 5 9 9 O 1.21523 * 119.99689 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00174 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99904 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47074 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.69132 * 95.00002 * 12 11 10 14 14 C 1.50324 * 123.64921 * 180.85545 * 13 12 11 15 15 N 1.47006 * 109.16456 * 349.02668 * 14 13 12 16 16 C 1.36937 * 121.37119 * 222.96660 * 15 14 13 17 17 H 1.07995 * 120.00018 * 155.98061 * 16 15 14 18 18 C 1.38819 * 120.00204 * 335.97600 * 16 15 14 19 19 N 1.31621 * 119.99777 * 344.49922 * 18 16 15 20 20 Si 1.86793 * 119.99893 * 164.49561 * 18 16 15 21 21 H 1.48504 * 109.47102 * 94.45615 * 20 18 16 22 22 H 1.48502 * 109.47161 * 214.45450 * 20 18 16 23 23 H 1.48502 * 109.47391 * 334.45915 * 20 18 16 24 24 C 1.47337 * 117.25031 * 42.94869 * 15 14 13 25 25 C 1.49965 * 117.69581 * 274.74179 * 12 11 10 26 26 N 1.31892 * 119.61594 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47313 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47390 * 299.99795 * 1 2 3 29 29 H 1.08999 * 109.47791 * 59.99747 * 1 2 3 30 30 H 1.08003 * 120.34794 * 359.97438 * 4 3 2 31 31 H 1.08010 * 120.71994 * 180.22310 * 5 4 3 32 32 H 1.07998 * 120.40918 * 179.75265 * 6 5 4 33 33 H 0.96996 * 120.00061 * 0.02562 * 10 8 7 34 34 H 1.09007 * 109.46946 * 300.00154 * 11 10 8 35 35 H 1.09000 * 109.46724 * 59.99770 * 11 10 8 36 36 H 1.08000 * 118.17925 * 0.88116 * 13 12 11 37 37 H 1.09000 * 109.51870 * 108.93029 * 14 13 12 38 38 H 1.09000 * 109.52311 * 229.11869 * 14 13 12 39 39 H 0.97000 * 119.99194 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.77974 * 57.81037 * 24 15 14 41 41 H 1.09002 * 109.77570 * 178.62254 * 24 15 14 42 42 H 1.09004 * 109.31160 * 281.29229 * 25 12 11 43 43 H 1.08994 * 109.31549 * 40.71646 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0057 5 6 4.0576 2.5083 0.0004 6 6 3.2665 3.6485 0.0005 7 6 1.8818 3.5137 0.0000 8 6 1.0266 4.7235 -0.0005 9 8 1.5353 5.8271 -0.0009 10 7 -0.3154 4.6000 -0.0004 11 6 -1.1611 5.7964 -0.0003 12 6 -2.6112 5.3865 -0.0009 13 6 -3.2177 5.3187 1.1408 14 6 -4.6550 4.9073 1.2974 15 7 -5.2918 4.8648 -0.0269 16 6 -6.5484 5.3696 -0.2302 17 1 -6.8494 5.6877 -1.2173 18 6 -7.4355 5.4724 0.8327 19 7 -7.2004 4.8200 1.9514 20 14 -8.9625 6.5366 0.6752 21 1 -10.1092 5.6965 0.2457 22 1 -9.2694 7.1594 1.9879 23 1 -8.7229 7.6000 -0.3333 24 6 -4.5221 4.2571 -1.1265 25 6 -3.2517 5.0917 -1.3245 26 7 1.3191 2.3101 0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0239 0.3662 0.0105 31 1 5.1350 2.5842 0.0011 32 1 3.7202 4.6286 0.0005 33 1 -0.7215 3.7192 0.0004 34 1 -0.9511 6.3897 0.8897 35 1 -0.9511 6.3897 -0.8903 36 1 -2.6601 5.5723 2.0303 37 1 -4.7032 3.9199 1.7565 38 1 -5.1739 5.6290 1.9281 39 1 -7.8205 4.8916 2.6939 40 1 -4.2579 3.2315 -0.8689 41 1 -5.1147 4.2675 -2.0413 42 1 -3.5053 6.0294 -1.8191 43 1 -2.5513 4.5364 -1.9482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001324717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:17 Heat of formation + Delta-G solvation = 7.216304 kcal Electronic energy + Delta-G solvation = -25853.854830 eV Core-core repulsion = 22093.707689 eV Total energy + Delta-G solvation = -3760.147141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10597 -39.55415 -38.07845 -37.59407 -35.02397 -33.29817 -32.58700 -31.21162 -30.78490 -29.73357 -27.72417 -27.04671 -25.01235 -23.76350 -23.15987 -22.73963 -21.21623 -20.83165 -18.90982 -17.99961 -17.61692 -16.42166 -16.34700 -16.33928 -15.80126 -15.65561 -15.32745 -14.96563 -14.45213 -14.35205 -13.90519 -13.83633 -13.64788 -13.43896 -13.34501 -12.90708 -12.56285 -12.28146 -12.06894 -12.01899 -11.58689 -11.45098 -11.36607 -10.94004 -10.74805 -10.67517 -10.40683 -10.33693 -10.33468 -9.87914 -9.84624 -9.61232 -9.06623 -8.82320 -8.70495 -8.08817 -6.77126 -5.82359 -3.20950 0.36244 0.92109 2.53098 2.60760 2.76116 3.33503 3.36404 3.43676 3.46141 3.60175 3.86328 4.47490 4.54435 4.66411 4.67933 4.93699 5.08337 5.09951 5.15366 5.15806 5.32887 5.37664 5.47673 5.53749 5.59836 5.76485 5.79934 5.90965 5.97349 6.05343 6.14813 6.31334 6.40456 6.49682 6.70763 6.84618 6.86004 7.13896 7.22438 7.25458 7.32082 7.60469 7.70605 7.79841 8.12926 8.35438 9.16940 9.79714 10.37674 11.28180 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021172 B = 0.002760 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.167632 B =10141.215928 C =10952.573776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.307 6.307 3 C 0.322 3.678 4 C -0.169 4.169 5 C -0.048 4.048 6 C -0.150 4.150 7 C 0.123 3.877 8 C 0.565 3.435 9 O -0.536 6.536 10 N -0.697 5.697 11 C 0.155 3.845 12 C -0.167 4.167 13 C -0.122 4.122 14 C 0.194 3.806 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.910 5.910 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.144 3.856 25 C -0.090 4.090 26 N -0.516 5.516 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.983 -7.655 -3.421 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.140 3.860 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.172 4.172 7 C -0.014 4.014 8 C 0.349 3.651 9 O -0.413 6.413 10 N -0.348 5.348 11 C 0.032 3.968 12 C -0.168 4.168 13 C -0.143 4.143 14 C 0.069 3.931 15 N -0.318 5.318 16 C -0.375 4.375 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.018 3.982 25 C -0.129 4.129 26 N -0.243 5.243 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.247 0.753 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.354 -7.149 -3.283 21.822 hybrid contribution -0.341 0.230 0.095 0.422 sum 20.014 -6.920 -3.188 21.415 Atomic orbital electron populations 1.22961 0.76437 1.03468 1.03023 1.86243 1.23483 1.23966 1.87688 1.19783 0.89414 0.84493 0.92299 1.21302 0.92007 0.99921 1.05803 1.21452 1.00919 0.90802 0.94159 1.21998 0.93037 1.00894 1.01229 1.20864 0.92250 0.90235 0.98021 1.17891 0.82521 0.87280 0.77401 1.90788 1.74059 1.25837 1.50641 1.46074 1.05102 1.11367 1.72218 1.20560 0.87794 0.86301 1.02101 1.20473 0.93146 1.06830 0.96307 1.23297 0.99727 0.95207 0.96092 1.19759 0.85373 0.99710 0.88226 1.44130 1.14648 1.68412 1.04655 1.19181 0.88593 1.34203 0.95542 0.91365 1.24989 0.97794 0.99760 0.97381 1.70010 1.37815 1.42652 1.05012 0.86243 0.82941 0.80363 0.77027 1.21498 1.21558 1.20469 1.20983 0.91163 0.93604 0.92470 1.20787 0.97891 1.00689 0.93543 1.67176 1.41056 0.98241 1.17823 0.88282 0.91838 0.91880 0.83580 0.83290 0.83124 0.75284 0.91330 0.91256 0.88764 0.94090 0.88854 0.93612 0.95871 0.92464 0.91664 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.19 10.48 -18.70 -0.20 -3.39 16 3 C 0.32 3.48 7.49 -17.14 -0.13 3.35 16 4 C -0.17 -1.40 10.05 -39.16 -0.39 -1.79 16 5 C -0.05 -0.35 10.16 -39.35 -0.40 -0.75 16 6 C -0.15 -1.50 9.63 -39.05 -0.38 -1.88 16 7 C 0.12 1.53 6.75 -83.02 -0.56 0.97 16 8 C 0.57 8.20 7.81 -12.19 -0.10 8.11 16 9 O -0.54 -9.04 16.32 5.35 0.09 -8.95 16 10 N -0.70 -9.86 5.54 -62.33 -0.35 -10.20 16 11 C 0.15 2.34 5.66 -5.19 -0.03 2.31 16 12 C -0.17 -2.86 5.22 -100.99 -0.53 -3.38 16 13 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 14 C 0.19 4.53 5.23 -5.10 -0.03 4.51 16 15 N -0.60 -14.66 3.01 -173.56 -0.52 -15.19 16 16 C -0.25 -6.66 9.71 -15.06 -0.15 -6.81 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 18 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 19 N -0.91 -25.91 11.08 55.49 0.61 -25.29 16 20 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.14 2.93 6.59 -3.44 -0.02 2.91 16 25 C -0.09 -1.56 5.95 -28.09 -0.17 -1.72 16 26 N -0.52 -6.24 8.39 -9.88 -0.08 -6.32 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 31 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 32 H 0.15 1.41 7.63 -52.49 -0.40 1.01 16 33 H 0.41 5.58 7.79 -40.82 -0.32 5.26 16 34 H 0.07 1.06 7.78 -51.92 -0.40 0.65 16 35 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 36 H 0.09 1.60 7.73 -52.49 -0.41 1.20 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -31.26 363.43 -8.29 -39.55 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.04 Total: 3.38 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.25 Total: 4.41 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.33 Total: -57.00 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.11 Total: -12.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.26 -8.29 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001324717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.769 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds