Wall clock time and date at job start Tue Mar 31 2020 11:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35666 * 116.99904 * 2 1 4 4 C 1.39285 * 119.61540 * 179.72987 * 3 2 1 5 5 C 1.38325 * 119.30437 * 179.75128 * 4 3 2 6 6 C 1.38782 * 118.55995 * 0.51417 * 5 4 3 7 7 C 1.39124 * 119.18866 * 359.72588 * 6 5 4 8 8 C 1.48151 * 119.69428 * 180.02562 * 7 6 5 9 9 O 1.21523 * 119.99689 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00174 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99904 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47074 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.69132 * 95.00002 * 12 11 10 14 14 C 1.50324 * 123.64921 * 180.85545 * 13 12 11 15 15 N 1.47006 * 109.16456 * 349.02668 * 14 13 12 16 16 C 1.36937 * 121.37119 * 222.96660 * 15 14 13 17 17 H 1.07995 * 120.00018 * 155.98061 * 16 15 14 18 18 C 1.38819 * 120.00204 * 335.97600 * 16 15 14 19 19 N 1.31621 * 119.99777 * 344.49922 * 18 16 15 20 20 Si 1.86793 * 119.99893 * 164.49561 * 18 16 15 21 21 H 1.48504 * 109.47102 * 94.45615 * 20 18 16 22 22 H 1.48502 * 109.47161 * 214.45450 * 20 18 16 23 23 H 1.48502 * 109.47391 * 334.45915 * 20 18 16 24 24 C 1.47337 * 117.25031 * 42.94869 * 15 14 13 25 25 C 1.49965 * 117.69581 * 274.74179 * 12 11 10 26 26 N 1.31892 * 119.61594 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47313 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47390 * 299.99795 * 1 2 3 29 29 H 1.08999 * 109.47791 * 59.99747 * 1 2 3 30 30 H 1.08003 * 120.34794 * 359.97438 * 4 3 2 31 31 H 1.08010 * 120.71994 * 180.22310 * 5 4 3 32 32 H 1.07998 * 120.40918 * 179.75265 * 6 5 4 33 33 H 0.96996 * 120.00061 * 0.02562 * 10 8 7 34 34 H 1.09007 * 109.46946 * 300.00154 * 11 10 8 35 35 H 1.09000 * 109.46724 * 59.99770 * 11 10 8 36 36 H 1.08000 * 118.17925 * 0.88116 * 13 12 11 37 37 H 1.09000 * 109.51870 * 108.93029 * 14 13 12 38 38 H 1.09000 * 109.52311 * 229.11869 * 14 13 12 39 39 H 0.97000 * 119.99194 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.77974 * 57.81037 * 24 15 14 41 41 H 1.09002 * 109.77570 * 178.62254 * 24 15 14 42 42 H 1.09004 * 109.31160 * 281.29229 * 25 12 11 43 43 H 1.08994 * 109.31549 * 40.71646 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0057 5 6 4.0576 2.5083 0.0004 6 6 3.2665 3.6485 0.0005 7 6 1.8818 3.5137 0.0000 8 6 1.0266 4.7235 -0.0005 9 8 1.5353 5.8271 -0.0009 10 7 -0.3154 4.6000 -0.0004 11 6 -1.1611 5.7964 -0.0003 12 6 -2.6112 5.3865 -0.0009 13 6 -3.2177 5.3187 1.1408 14 6 -4.6550 4.9073 1.2974 15 7 -5.2918 4.8648 -0.0269 16 6 -6.5484 5.3696 -0.2302 17 1 -6.8494 5.6877 -1.2173 18 6 -7.4355 5.4724 0.8327 19 7 -7.2004 4.8200 1.9514 20 14 -8.9625 6.5366 0.6752 21 1 -10.1092 5.6965 0.2457 22 1 -9.2694 7.1594 1.9879 23 1 -8.7229 7.6000 -0.3333 24 6 -4.5221 4.2571 -1.1265 25 6 -3.2517 5.0917 -1.3245 26 7 1.3191 2.3101 0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0239 0.3662 0.0105 31 1 5.1350 2.5842 0.0011 32 1 3.7202 4.6286 0.0005 33 1 -0.7215 3.7192 0.0004 34 1 -0.9511 6.3897 0.8897 35 1 -0.9511 6.3897 -0.8903 36 1 -2.6601 5.5723 2.0303 37 1 -4.7032 3.9199 1.7565 38 1 -5.1739 5.6290 1.9281 39 1 -7.8205 4.8916 2.6939 40 1 -4.2579 3.2315 -0.8689 41 1 -5.1147 4.2675 -2.0413 42 1 -3.5053 6.0294 -1.8191 43 1 -2.5513 4.5364 -1.9482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001324717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:17 Heat of formation + Delta-G solvation = -14.302240 kcal Electronic energy + Delta-G solvation = -25854.787945 eV Core-core repulsion = 22093.707689 eV Total energy + Delta-G solvation = -3761.080255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92228 -40.61895 -39.40937 -38.62365 -36.49114 -34.68259 -33.66266 -32.58735 -31.87858 -31.42651 -28.83876 -28.21637 -26.39472 -25.03772 -24.35462 -23.89714 -22.85848 -21.91007 -19.88812 -19.43828 -18.82615 -17.62632 -17.21335 -17.11257 -17.02222 -16.90406 -16.79525 -16.34388 -15.80075 -15.46323 -15.27383 -15.14236 -15.03013 -14.65510 -14.29377 -14.18350 -13.95168 -13.62009 -13.29143 -13.22116 -12.95445 -12.81146 -12.70125 -12.59595 -12.25314 -12.18526 -12.12543 -11.73340 -11.70354 -11.29182 -11.02491 -10.75637 -10.68970 -10.21939 -9.69000 -9.61988 -8.76342 -7.89347 -5.30503 -0.43276 0.22619 1.12711 1.46298 1.48232 1.57840 1.63543 2.05194 2.23808 2.50667 2.76823 2.97927 3.28038 3.59524 3.77939 3.87737 3.92755 3.94168 4.02889 4.25430 4.40580 4.43670 4.44251 4.47379 4.50985 4.60417 4.70176 4.80531 4.81084 4.88843 4.93578 5.07553 5.10755 5.18921 5.26466 5.34083 5.37776 5.45781 5.60554 5.73395 6.09963 6.13320 6.32490 6.33050 6.63814 7.02821 7.12444 7.82139 8.36270 9.19405 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021172 B = 0.002760 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.167632 B =10141.215928 C =10952.573776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.300 3.700 4 C -0.158 4.158 5 C -0.034 4.034 6 C -0.148 4.148 7 C 0.094 3.906 8 C 0.566 3.434 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.164 3.836 12 C -0.141 4.141 13 C -0.140 4.140 14 C 0.206 3.794 15 N -0.615 5.615 16 C -0.257 4.257 17 H 0.071 0.929 18 C -0.054 4.054 19 N -0.939 5.939 20 Si 0.968 3.032 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.271 1.271 24 C 0.140 3.860 25 C -0.084 4.084 26 N -0.532 5.532 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.176 0.824 31 H 0.193 0.807 32 H 0.155 0.845 33 H 0.414 0.586 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.250 0.750 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.454 -8.109 -4.614 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.220 6.220 3 C 0.118 3.882 4 C -0.178 4.178 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.042 4.042 8 C 0.352 3.648 9 O -0.444 6.444 10 N -0.345 5.345 11 C 0.042 3.958 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.081 3.919 15 N -0.339 5.339 16 C -0.387 4.387 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.796 3.204 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.196 1.196 24 C 0.014 3.986 25 C -0.122 4.122 26 N -0.260 5.260 27 H 0.140 0.860 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.193 0.807 31 H 0.210 0.790 32 H 0.173 0.827 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.840 -7.615 -4.502 24.494 hybrid contribution -1.012 0.273 0.398 1.121 sum 21.829 -7.342 -4.104 23.393 Atomic orbital electron populations 1.23039 0.76044 1.04723 1.02189 1.86241 1.23956 1.23934 1.87853 1.20201 0.90590 0.84204 0.93208 1.21741 0.91060 1.01503 1.03498 1.21913 1.02702 0.89279 0.92010 1.22209 0.92258 1.02229 1.00320 1.20634 0.92882 0.89552 1.01083 1.18213 0.82451 0.87782 0.76365 1.90762 1.74475 1.27090 1.52062 1.45959 1.05191 1.11031 1.72324 1.20374 0.86290 0.86730 1.02453 1.20597 0.94072 1.03930 0.95564 1.22973 0.97421 0.97904 0.97771 1.19393 0.87681 0.97504 0.87313 1.44407 1.14579 1.68959 1.05931 1.19515 0.89668 1.33874 0.95655 0.91172 1.25742 1.00751 1.01126 0.97270 1.70170 1.38763 1.44068 1.05579 0.85247 0.79577 0.78804 0.76747 1.21225 1.21950 1.19581 1.21160 0.92052 0.94101 0.91245 1.20719 0.96947 1.00554 0.94023 1.67023 1.41943 0.98518 1.18485 0.86040 0.92882 0.92475 0.80685 0.79035 0.82724 0.74926 0.91363 0.90632 0.87007 0.96848 0.92363 0.94114 0.95523 0.92157 0.91530 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.38 113.37 1.18 1.77 16 2 O -0.31 -6.07 10.48 -89.82 -0.94 -7.01 16 3 C 0.30 5.97 7.49 84.94 0.64 6.61 16 4 C -0.16 -2.07 10.05 22.54 0.23 -1.85 16 5 C -0.03 -0.38 10.16 22.42 0.23 -0.15 16 6 C -0.15 -2.65 9.63 22.61 0.22 -2.43 16 7 C 0.09 2.24 6.75 41.84 0.28 2.52 16 8 C 0.57 16.01 7.81 86.88 0.68 16.69 16 9 O -0.56 -18.64 16.32 -3.79 -0.06 -18.71 16 10 N -0.70 -18.97 5.54 -469.39 -2.60 -21.57 16 11 C 0.16 4.75 5.66 85.63 0.48 5.23 16 12 C -0.14 -4.68 5.22 -15.14 -0.08 -4.76 16 13 C -0.14 -5.32 9.47 27.11 0.26 -5.07 16 14 C 0.21 10.00 5.23 85.42 0.45 10.45 16 15 N -0.61 -30.83 3.01 -703.04 -2.11 -32.94 16 16 C -0.26 -14.14 9.71 84.04 0.82 -13.32 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -3.02 5.01 84.86 0.42 -2.60 16 19 N -0.94 -55.34 11.08 21.65 0.24 -55.10 16 20 Si 0.97 45.01 29.58 68.60 2.03 47.04 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 C 0.14 5.61 6.59 86.32 0.57 6.18 16 25 C -0.08 -2.76 5.95 29.71 0.18 -2.58 16 26 N -0.53 -12.37 8.39 -298.21 -2.50 -14.88 16 27 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 29 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 30 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.19 0.46 8.06 -2.91 -0.02 0.43 16 32 H 0.16 2.59 7.63 -2.91 -0.02 2.57 16 33 H 0.41 10.91 7.79 -92.71 -0.72 10.19 16 34 H 0.07 2.02 7.78 -2.38 -0.02 2.00 16 35 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 36 H 0.11 3.82 7.73 -2.91 -0.02 3.79 16 37 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 3.20 6.41 -2.39 -0.02 3.18 16 39 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 2.35 7.96 -2.39 -0.02 2.33 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.39 363.43 0.90 -68.49 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.31 Total: 17.99 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.54 Total: 16.69 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -6.97 Total: -124.49 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.00 Total: -25.71 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.39 0.90 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001324717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.191 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds