Wall clock time and date at job start Tue Mar 31 2020 11:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35430 * 119.47492 * 2 1 4 4 C 1.35756 * 121.23449 * 180.02562 * 3 2 1 5 5 C 1.39474 * 120.12711 * 359.97438 * 4 3 2 6 6 C 1.39340 * 118.96056 * 0.02562 * 5 4 3 7 7 C 1.47083 * 120.58584 * 179.72595 * 6 5 4 8 8 O 1.21647 * 119.99953 * 354.17089 * 7 6 5 9 9 N 1.34775 * 119.99879 * 174.16459 * 7 6 5 10 10 C 1.46502 * 120.00211 * 184.73050 * 9 7 6 11 11 C 1.50694 * 109.47157 * 180.02562 * 10 9 7 12 12 C 1.29456 * 117.69057 * 95.00347 * 11 10 9 13 13 C 1.50327 * 123.64937 * 180.85581 * 12 11 10 14 14 N 1.47005 * 109.16572 * 349.02092 * 13 12 11 15 15 C 1.36934 * 121.37504 * 222.96933 * 14 13 12 16 16 H 1.08001 * 120.00065 * 152.52766 * 15 14 13 17 17 C 1.38814 * 120.00014 * 332.52364 * 15 14 13 18 18 N 1.31618 * 119.99994 * 350.78063 * 17 15 14 19 19 Si 1.86805 * 119.99880 * 170.79007 * 17 15 14 20 20 H 1.48497 * 109.47155 * 94.99480 * 19 17 15 21 21 H 1.48501 * 109.46648 * 214.99330 * 19 17 15 22 22 H 1.48495 * 109.46923 * 334.99073 * 19 17 15 23 23 C 1.47340 * 117.24913 * 42.94927 * 14 13 12 24 24 C 1.49965 * 117.69669 * 274.73884 * 11 10 9 25 25 C 1.34651 * 119.46789 * 180.02562 * 2 1 3 26 26 O 1.21891 * 120.10383 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47148 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47393 * 119.99405 * 1 2 3 29 29 H 1.08995 * 109.47357 * 239.99740 * 1 2 3 30 30 H 1.08007 * 119.38522 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.94039 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.51680 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00083 * 4.73225 * 9 7 6 34 34 H 1.09004 * 109.47059 * 300.00319 * 10 9 7 35 35 H 1.09002 * 109.46948 * 59.99859 * 10 9 7 36 36 H 1.07995 * 118.17892 * 0.87884 * 12 11 10 37 37 H 1.09000 * 109.52304 * 108.92421 * 13 12 11 38 38 H 1.08994 * 109.52519 * 229.11461 * 13 12 11 39 39 H 0.96998 * 119.99730 * 179.97438 * 18 17 15 40 40 H 1.08991 * 109.78256 * 57.80787 * 23 14 13 41 41 H 1.09006 * 109.77778 * 178.61995 * 23 14 13 42 42 H 1.09002 * 109.31633 * 281.29021 * 24 11 10 43 43 H 1.08996 * 109.31477 * 40.71610 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1790 0.0000 4 6 3.4883 1.2207 -0.0005 5 6 4.2251 0.0364 -0.0005 6 6 3.5463 -1.1805 -0.0005 7 6 4.2875 -2.4509 -0.0066 8 8 5.4988 -2.4478 -0.1187 9 7 3.6246 -3.6183 0.1121 10 6 4.3687 -4.8765 0.2104 11 6 3.4003 -6.0245 0.3329 12 6 3.0676 -6.6492 -0.7511 13 6 2.0999 -7.7991 -0.7862 14 7 1.8259 -8.2414 0.5887 15 6 1.7748 -9.5708 0.9131 16 1 2.0152 -9.8915 1.9160 17 6 1.4141 -10.5062 -0.0470 18 7 0.9474 -10.1077 -1.2114 19 14 1.5907 -12.3306 0.3136 20 1 0.2970 -12.8646 0.8096 21 1 1.9776 -13.0455 -0.9292 22 1 2.6381 -12.5317 1.3468 23 6 1.6088 -7.1953 1.6033 24 6 2.8947 -6.3667 1.7026 25 6 2.1274 -1.1723 -0.0005 26 8 1.5101 -2.2233 -0.0005 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3634 -0.5138 0.8899 30 1 1.5728 2.1035 0.0004 31 1 3.9983 2.1727 -0.0009 32 1 5.3047 0.0623 -0.0005 33 1 2.6549 -3.6256 0.1324 34 1 4.9778 -5.0092 -0.6838 35 1 5.0138 -4.8494 1.0886 36 1 3.5101 -6.3266 -1.6819 37 1 1.1708 -7.4790 -1.2578 38 1 2.5329 -8.6224 -1.3542 39 1 0.6956 -10.7613 -1.8824 40 1 0.7770 -6.5578 1.3038 41 1 1.3930 -7.6557 2.5675 42 1 3.6552 -6.9373 2.2356 43 1 2.6877 -5.4475 2.2506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001382273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:06 Heat of formation + Delta-G solvation = 12.715833 kcal Electronic energy + Delta-G solvation = -26150.542196 eV Core-core repulsion = 22390.633532 eV Total energy + Delta-G solvation = -3759.908664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81045 -39.24455 -37.59330 -37.45537 -34.87899 -34.59820 -32.66679 -30.89059 -30.36732 -29.56733 -28.12362 -27.02682 -25.10529 -23.65804 -23.01787 -22.56917 -21.07085 -20.70293 -18.30151 -17.80386 -17.53817 -17.28990 -16.55759 -16.00163 -15.49924 -15.42896 -15.09950 -14.84787 -14.68234 -14.17677 -13.72698 -13.61808 -13.37010 -13.33237 -13.16777 -12.88081 -12.79527 -12.52329 -12.27938 -12.10286 -11.89046 -11.44824 -11.21518 -10.82181 -10.69034 -10.41738 -10.34212 -10.27503 -10.18705 -9.88635 -9.76950 -9.46435 -8.71342 -8.61226 -8.36555 -7.90681 -6.60631 -5.72378 -3.15440 0.10057 1.43817 2.09710 2.69280 2.82179 3.41850 3.48168 3.50711 3.61650 3.77316 4.04337 4.09842 4.54429 4.55878 4.61049 4.81050 4.82630 4.94147 5.16985 5.32737 5.41267 5.47910 5.55068 5.56262 5.68639 5.80977 5.99499 5.99757 6.11465 6.22559 6.32379 6.48637 6.50133 6.63340 6.81986 6.86720 7.00902 7.32010 7.40404 7.47275 7.53116 7.81681 7.95401 8.01565 8.48089 8.56278 9.27904 9.89282 10.49975 11.37803 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002759 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.075117 B =10145.806818 C =10767.219078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.494 5.494 3 C 0.156 3.844 4 C -0.241 4.241 5 C 0.055 3.945 6 C -0.269 4.269 7 C 0.570 3.430 8 O -0.560 6.560 9 N -0.706 5.706 10 C 0.155 3.845 11 C -0.163 4.163 12 C -0.127 4.127 13 C 0.197 3.803 14 N -0.596 5.596 15 C -0.244 4.244 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.912 5.912 19 Si 0.906 3.094 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.144 3.856 24 C -0.089 4.089 25 C 0.525 3.475 26 O -0.530 6.530 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.417 0.583 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.253 0.747 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.830 28.034 2.052 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.202 5.202 3 C 0.026 3.974 4 C -0.264 4.264 5 C 0.031 3.969 6 C -0.276 4.276 7 C 0.357 3.643 8 O -0.441 6.441 9 N -0.366 5.366 10 C 0.032 3.968 11 C -0.163 4.163 12 C -0.148 4.148 13 C 0.072 3.928 14 N -0.319 5.319 15 C -0.373 4.373 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.557 5.557 19 Si 0.736 3.264 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.018 3.982 24 C -0.128 4.128 25 C 0.327 3.673 26 O -0.411 6.411 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.186 0.814 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.088 27.150 1.868 27.236 hybrid contribution -0.310 -0.701 0.018 0.766 sum 0.778 26.449 1.885 26.527 Atomic orbital electron populations 1.22276 0.76311 1.04199 1.05412 1.45397 1.09768 1.06698 1.58336 1.22262 0.94259 0.89392 0.91466 1.20695 0.92331 0.99755 1.13655 1.22029 1.01724 0.90277 0.82829 1.21119 0.92148 0.95890 1.18454 1.17450 0.86627 0.83246 0.77023 1.90759 1.13550 1.87660 1.52163 1.46729 1.12968 1.05125 1.71735 1.20455 0.93365 0.81639 1.01326 1.20468 1.01692 0.97812 0.96364 1.23267 0.97316 0.97853 0.96350 1.19749 0.93560 0.92327 0.87194 1.44097 1.82157 1.01426 1.04225 1.19186 1.39039 0.81892 0.97210 0.91542 1.25108 0.99073 0.98351 0.97341 1.69974 1.46853 1.32589 1.06281 0.86204 0.77741 0.85214 0.77193 1.21513 1.21631 1.20470 1.20995 0.93095 0.90647 0.93485 1.20768 0.99769 0.98923 0.93343 1.17080 0.88264 0.82928 0.79057 1.90714 1.68860 1.28892 1.52669 0.89095 0.89462 0.89458 0.81448 0.82838 0.83256 0.73706 0.91780 0.91843 0.88922 0.94201 0.88911 0.93659 0.95788 0.92570 0.91829 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 10.04 59.85 0.60 0.90 16 2 N -0.49 -3.78 2.98 -126.77 -0.38 -4.16 16 3 C 0.16 0.66 10.28 -16.85 -0.17 0.49 16 4 C -0.24 -1.23 9.99 -40.01 -0.40 -1.63 16 5 C 0.05 0.50 9.69 -38.71 -0.38 0.12 16 6 C -0.27 -3.51 5.92 -104.50 -0.62 -4.13 16 7 C 0.57 9.60 7.73 -12.67 -0.10 9.50 16 8 O -0.56 -10.60 16.41 5.24 0.09 -10.52 16 9 N -0.71 -12.41 5.46 -62.67 -0.34 -12.76 16 10 C 0.16 2.80 5.67 -5.20 -0.03 2.78 16 11 C -0.16 -3.24 5.22 -101.00 -0.53 -3.76 16 12 C -0.13 -2.72 9.47 -35.78 -0.34 -3.06 16 13 C 0.20 4.99 5.17 -5.10 -0.03 4.97 16 14 N -0.60 -15.77 3.00 -173.56 -0.52 -16.29 16 15 C -0.24 -6.93 9.70 -15.06 -0.15 -7.07 16 16 H 0.07 1.85 7.85 -52.49 -0.41 1.43 16 17 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 18 N -0.91 -27.03 10.96 55.49 0.61 -26.42 16 19 Si 0.91 22.29 29.56 -169.99 -5.03 17.26 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 3.25 6.59 -3.43 -0.02 3.22 16 24 C -0.09 -1.75 5.95 -28.09 -0.17 -1.92 16 25 C 0.52 6.58 7.44 -14.92 -0.11 6.47 16 26 O -0.53 -8.42 13.70 5.02 0.07 -8.35 16 27 H 0.09 0.08 7.70 -51.93 -0.40 -0.31 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.17 -0.07 7.79 -52.48 -0.41 -0.48 16 31 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16 32 H 0.15 1.28 7.71 -52.49 -0.40 0.87 16 33 H 0.42 7.57 5.07 -40.82 -0.21 7.36 16 34 H 0.06 1.17 7.78 -51.93 -0.40 0.76 16 35 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 36 H 0.09 1.82 7.73 -52.49 -0.41 1.41 16 37 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 2.58 6.47 -51.93 -0.34 2.24 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -36.44 356.77 -8.55 -44.99 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.91 Total: 4.11 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.52 Total: 6.75 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.63 Total: -59.62 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.15 Total: -18.87 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.44 -8.55 -44.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001382273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.708 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds