Wall clock time and date at job start Tue Mar 31 2020 11:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35430 * 119.47492 * 2 1 4 4 C 1.35756 * 121.23449 * 180.02562 * 3 2 1 5 5 C 1.39474 * 120.12711 * 359.97438 * 4 3 2 6 6 C 1.39340 * 118.96056 * 0.02562 * 5 4 3 7 7 C 1.47083 * 120.58584 * 179.72595 * 6 5 4 8 8 O 1.21647 * 119.99953 * 354.17089 * 7 6 5 9 9 N 1.34775 * 119.99879 * 174.16459 * 7 6 5 10 10 C 1.46502 * 120.00211 * 184.73050 * 9 7 6 11 11 C 1.50694 * 109.47157 * 180.02562 * 10 9 7 12 12 C 1.29456 * 117.69057 * 95.00347 * 11 10 9 13 13 C 1.50327 * 123.64937 * 180.85581 * 12 11 10 14 14 N 1.47005 * 109.16572 * 349.02092 * 13 12 11 15 15 C 1.36934 * 121.37504 * 222.96933 * 14 13 12 16 16 H 1.08001 * 120.00065 * 152.52766 * 15 14 13 17 17 C 1.38814 * 120.00014 * 332.52364 * 15 14 13 18 18 N 1.31618 * 119.99994 * 350.78063 * 17 15 14 19 19 Si 1.86805 * 119.99880 * 170.79007 * 17 15 14 20 20 H 1.48497 * 109.47155 * 94.99480 * 19 17 15 21 21 H 1.48501 * 109.46648 * 214.99330 * 19 17 15 22 22 H 1.48495 * 109.46923 * 334.99073 * 19 17 15 23 23 C 1.47340 * 117.24913 * 42.94927 * 14 13 12 24 24 C 1.49965 * 117.69669 * 274.73884 * 11 10 9 25 25 C 1.34651 * 119.46789 * 180.02562 * 2 1 3 26 26 O 1.21891 * 120.10383 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47148 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47393 * 119.99405 * 1 2 3 29 29 H 1.08995 * 109.47357 * 239.99740 * 1 2 3 30 30 H 1.08007 * 119.38522 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.94039 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.51680 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00083 * 4.73225 * 9 7 6 34 34 H 1.09004 * 109.47059 * 300.00319 * 10 9 7 35 35 H 1.09002 * 109.46948 * 59.99859 * 10 9 7 36 36 H 1.07995 * 118.17892 * 0.87884 * 12 11 10 37 37 H 1.09000 * 109.52304 * 108.92421 * 13 12 11 38 38 H 1.08994 * 109.52519 * 229.11461 * 13 12 11 39 39 H 0.96998 * 119.99730 * 179.97438 * 18 17 15 40 40 H 1.08991 * 109.78256 * 57.80787 * 23 14 13 41 41 H 1.09006 * 109.77778 * 178.61995 * 23 14 13 42 42 H 1.09002 * 109.31633 * 281.29021 * 24 11 10 43 43 H 1.08996 * 109.31477 * 40.71610 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1790 0.0000 4 6 3.4883 1.2207 -0.0005 5 6 4.2251 0.0364 -0.0005 6 6 3.5463 -1.1805 -0.0005 7 6 4.2875 -2.4509 -0.0066 8 8 5.4988 -2.4478 -0.1187 9 7 3.6246 -3.6183 0.1121 10 6 4.3687 -4.8765 0.2104 11 6 3.4003 -6.0245 0.3329 12 6 3.0676 -6.6492 -0.7511 13 6 2.0999 -7.7991 -0.7862 14 7 1.8259 -8.2414 0.5887 15 6 1.7748 -9.5708 0.9131 16 1 2.0152 -9.8915 1.9160 17 6 1.4141 -10.5062 -0.0470 18 7 0.9474 -10.1077 -1.2114 19 14 1.5907 -12.3306 0.3136 20 1 0.2970 -12.8646 0.8096 21 1 1.9776 -13.0455 -0.9292 22 1 2.6381 -12.5317 1.3468 23 6 1.6088 -7.1953 1.6033 24 6 2.8947 -6.3667 1.7026 25 6 2.1274 -1.1723 -0.0005 26 8 1.5101 -2.2233 -0.0005 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3634 -0.5138 0.8899 30 1 1.5728 2.1035 0.0004 31 1 3.9983 2.1727 -0.0009 32 1 5.3047 0.0623 -0.0005 33 1 2.6549 -3.6256 0.1324 34 1 4.9778 -5.0092 -0.6838 35 1 5.0138 -4.8494 1.0886 36 1 3.5101 -6.3266 -1.6819 37 1 1.1708 -7.4790 -1.2578 38 1 2.5329 -8.6224 -1.3542 39 1 0.6956 -10.7613 -1.8824 40 1 0.7770 -6.5578 1.3038 41 1 1.3930 -7.6557 2.5675 42 1 3.6552 -6.9373 2.2356 43 1 2.6877 -5.4475 2.2506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001382273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:05 Heat of formation + Delta-G solvation = -12.859762 kcal Electronic energy + Delta-G solvation = -26151.651237 eV Core-core repulsion = 22390.633532 eV Total energy + Delta-G solvation = -3761.017705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54451 -40.50228 -39.31354 -38.29171 -36.36113 -35.45654 -34.44890 -32.63709 -31.51096 -31.15011 -28.68124 -28.61433 -26.48107 -25.06358 -24.36283 -23.69193 -22.85414 -21.91561 -19.61796 -19.18064 -18.53878 -18.06232 -17.44802 -17.27300 -17.05128 -16.73763 -16.53810 -16.12517 -15.77363 -15.46202 -15.39040 -15.25059 -14.93835 -14.54200 -14.19761 -13.98165 -13.65391 -13.59885 -13.46072 -13.30927 -13.06528 -12.97907 -12.82786 -12.77731 -12.63777 -12.24592 -12.11959 -11.77185 -11.39910 -11.21288 -11.09925 -11.06942 -10.72509 -10.05972 -9.69669 -9.09853 -8.73691 -7.89188 -5.36661 -0.54860 0.78033 1.15483 1.45983 1.47331 1.53431 1.57657 1.72186 2.49461 2.58029 2.71796 3.28452 3.51251 3.58326 3.79070 3.81791 3.91573 3.96795 4.00409 4.18433 4.35067 4.38373 4.41890 4.46531 4.57345 4.67365 4.78459 4.81744 4.84832 4.88140 4.96541 5.04374 5.15744 5.23253 5.33081 5.42952 5.45046 5.54547 5.58925 5.71491 5.89292 6.11918 6.33483 6.56759 6.86972 7.11255 7.28900 7.78708 8.36500 9.19627 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002759 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.075117 B =10145.806818 C =10767.219078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.490 5.490 3 C 0.189 3.811 4 C -0.243 4.243 5 C 0.076 3.924 6 C -0.330 4.330 7 C 0.565 3.435 8 O -0.594 6.594 9 N -0.713 5.713 10 C 0.163 3.837 11 C -0.141 4.141 12 C -0.147 4.147 13 C 0.210 3.790 14 N -0.614 5.614 15 C -0.260 4.260 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.942 5.942 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.269 1.269 23 C 0.141 3.859 24 C -0.082 4.082 25 C 0.514 3.486 26 O -0.582 6.582 27 H 0.146 0.854 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.234 0.766 31 H 0.199 0.801 32 H 0.149 0.851 33 H 0.414 0.586 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.010 0.990 38 H 0.062 0.938 39 H 0.251 0.749 40 H 0.019 0.981 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 32.011 3.234 32.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.195 5.195 3 C 0.058 3.942 4 C -0.265 4.265 5 C 0.052 3.948 6 C -0.337 4.337 7 C 0.355 3.645 8 O -0.479 6.479 9 N -0.373 5.373 10 C 0.039 3.961 11 C -0.141 4.141 12 C -0.167 4.167 13 C 0.085 3.915 14 N -0.338 5.338 15 C -0.390 4.390 16 H 0.089 0.911 17 C -0.250 4.250 18 N -0.589 5.589 19 Si 0.804 3.196 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.193 1.193 23 C 0.016 3.984 24 C -0.121 4.121 25 C 0.318 3.682 26 O -0.468 6.468 27 H 0.164 0.836 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.250 0.750 31 H 0.216 0.784 32 H 0.167 0.833 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.028 0.972 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.982 31.191 3.072 31.358 hybrid contribution -0.334 -1.628 -0.307 1.690 sum 0.647 29.564 2.765 29.700 Atomic orbital electron populations 1.22546 0.74515 1.07398 1.04223 1.45506 1.11038 1.06493 1.56476 1.23407 0.94588 0.89899 0.86282 1.21219 0.92780 0.99681 1.12787 1.22322 1.02121 0.90470 0.79842 1.20788 0.92680 0.95177 1.25084 1.18064 0.86525 0.84235 0.75656 1.90710 1.14874 1.88290 1.54001 1.46752 1.12798 1.05206 1.72533 1.20273 0.92786 0.81565 1.01438 1.20649 1.00322 0.97193 0.95959 1.22984 0.98276 0.97612 0.97875 1.19362 0.93033 0.92519 0.86554 1.44363 1.82519 1.01839 1.05095 1.19545 1.38848 0.83086 0.97518 0.91095 1.25944 0.99048 1.02767 0.97197 1.70159 1.47825 1.33752 1.07113 0.85124 0.77874 0.79672 0.76966 1.21023 1.21831 1.19345 1.21135 0.94369 0.90074 0.92841 1.20703 0.98369 0.99543 0.93490 1.17091 0.88203 0.83796 0.79090 1.90654 1.69611 1.30923 1.55640 0.83557 0.90880 0.90666 0.74950 0.78422 0.83320 0.73970 0.92199 0.91231 0.87472 0.97221 0.92013 0.94032 0.96260 0.91692 0.91135 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.37 10.04 127.77 1.28 1.66 16 2 N -0.49 -6.02 2.98 -673.18 -2.00 -8.03 16 3 C 0.19 0.48 10.28 83.56 0.86 1.34 16 4 C -0.24 -1.23 9.99 21.99 0.22 -1.01 16 5 C 0.08 1.24 9.69 22.83 0.22 1.46 16 6 C -0.33 -8.65 5.92 -19.79 -0.12 -8.76 16 7 C 0.57 19.81 7.73 86.56 0.67 20.48 16 8 O -0.59 -23.33 16.41 -4.18 -0.07 -23.40 16 9 N -0.71 -26.12 5.46 -470.43 -2.57 -28.68 16 10 C 0.16 6.03 5.67 85.63 0.49 6.52 16 11 C -0.14 -5.71 5.22 -15.14 -0.08 -5.79 16 12 C -0.15 -6.58 9.47 27.11 0.26 -6.33 16 13 C 0.21 11.32 5.17 85.42 0.44 11.76 16 14 N -0.61 -33.59 3.00 -703.02 -2.11 -35.70 16 15 C -0.26 -15.10 9.70 84.03 0.82 -14.29 16 16 H 0.07 3.97 7.85 -2.91 -0.02 3.94 16 17 C -0.05 -3.20 5.13 84.86 0.44 -2.77 16 18 N -0.94 -58.04 10.96 21.65 0.24 -57.80 16 19 Si 0.98 46.65 29.56 68.60 2.03 48.68 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.14 6.46 6.59 86.32 0.57 7.03 16 24 C -0.08 -3.24 5.95 29.72 0.18 -3.06 16 25 C 0.51 12.81 7.44 85.17 0.63 13.44 16 26 O -0.58 -19.40 13.70 -4.96 -0.07 -19.47 16 27 H 0.15 -0.62 7.70 -2.39 -0.02 -0.64 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.23 -2.36 7.79 -2.91 -0.02 -2.38 16 31 H 0.20 -0.66 8.06 -2.91 -0.02 -0.69 16 32 H 0.15 2.36 7.71 -2.91 -0.02 2.34 16 33 H 0.41 15.83 5.07 -92.75 -0.47 15.36 16 34 H 0.06 2.26 7.78 -2.39 -0.02 2.24 16 35 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 36 H 0.11 4.42 7.73 -2.91 -0.02 4.40 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 3.65 6.47 -2.39 -0.02 3.64 16 39 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 2.81 7.96 -2.38 -0.02 2.79 16 42 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -87.13 356.77 2.88 -84.25 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.56 Total: 18.48 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.87 Total: 21.66 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -6.44 Total: -130.22 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.14 Total: -42.86 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -87.13 2.88 -84.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001382273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.392 kcal (2) G-P(sol) polarization free energy of solvation -87.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds