Wall clock time and date at job start Tue Mar 31 2020 11:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34782 * 120.00102 * 2 1 4 4 O 1.21721 * 120.00320 * 185.53853 * 3 2 1 5 5 C 1.46488 * 119.99568 * 5.53863 * 3 2 1 6 6 C 1.37783 * 125.85830 * 186.93940 * 5 3 2 7 7 C 1.39934 * 107.68798 * 179.97438 * 6 5 3 8 8 O 1.35124 * 145.14040 * 179.97438 * 7 6 5 9 9 C 1.34375 * 109.62559 * 180.02562 * 8 7 6 10 10 C 1.34469 * 109.44493 * 0.02562 * 9 8 7 11 11 C 1.39134 * 107.40621 * 0.02562 * 7 6 5 12 12 N 1.37112 * 108.10695 * 359.77049 * 11 7 6 13 13 H 0.97002 * 125.74118 * 180.22624 * 12 11 7 14 14 C 1.46507 * 120.00279 * 179.97438 * 2 1 3 15 15 C 1.53042 * 109.45724 * 60.02563 * 14 2 1 16 16 C 1.53188 * 109.30934 * 178.59897 * 15 14 2 17 17 N 1.46926 * 108.76695 * 54.66142 * 16 15 14 18 18 C 1.36932 * 120.63290 * 126.40098 * 17 16 15 19 19 H 1.08004 * 120.00171 * 329.63019 * 18 17 16 20 20 C 1.38811 * 120.00041 * 149.63522 * 18 17 16 21 21 N 1.31624 * 120.00099 * 350.38065 * 20 18 17 22 22 Si 1.86794 * 120.00285 * 170.38436 * 20 18 17 23 23 H 1.48499 * 109.47203 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47508 * 119.99843 * 22 20 18 25 25 H 1.48506 * 109.47033 * 239.99638 * 22 20 18 26 26 C 1.46932 * 118.73508 * 306.38181 * 17 16 15 27 27 C 1.53036 * 109.46044 * 299.97597 * 14 2 1 28 28 H 1.09001 * 109.47126 * 275.33741 * 1 2 3 29 29 H 1.08993 * 109.47426 * 35.33938 * 1 2 3 30 30 H 1.09008 * 109.47113 * 155.34113 * 1 2 3 31 31 H 1.08006 * 126.15638 * 359.97438 * 6 5 3 32 32 H 1.07998 * 125.27685 * 180.02562 * 9 8 7 33 33 H 1.08002 * 126.40824 * 179.97438 * 10 9 8 34 34 H 1.08994 * 109.45777 * 179.97438 * 14 2 1 35 35 H 1.08991 * 109.50205 * 298.57078 * 15 14 2 36 36 H 1.09005 * 109.49331 * 58.66718 * 15 14 2 37 37 H 1.09001 * 109.60543 * 294.86934 * 16 15 14 38 38 H 1.09004 * 109.70340 * 174.50714 * 16 15 14 39 39 H 0.96997 * 120.00616 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.58049 * 293.81861 * 26 17 16 41 41 H 1.09001 * 109.70240 * 173.46315 * 26 17 16 42 42 H 1.09006 * 109.49956 * 301.33630 * 27 14 2 43 43 H 1.09001 * 109.50108 * 61.39555 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1697 -0.1017 5 6 1.4115 2.4329 0.1224 6 6 1.9571 3.6923 0.0021 7 6 0.9270 4.6213 0.1861 8 8 0.6132 5.9349 0.2290 9 6 -0.6997 6.0774 0.4772 10 6 -1.2661 4.8642 0.6013 11 6 -0.2429 3.9050 0.4187 12 7 0.0597 2.5685 0.3736 13 1 -0.5691 1.8406 0.4989 14 6 2.1975 -1.2688 0.0006 15 6 1.8281 -2.0713 -1.2491 16 6 2.6221 -3.3813 -1.2629 17 7 2.3850 -4.0910 0.0016 18 6 1.9520 -5.3901 0.0020 19 1 1.3329 -5.7532 -0.8050 20 6 2.3088 -6.2403 1.0397 21 7 3.2110 -5.8616 1.9201 22 14 1.5087 -7.9218 1.1866 23 1 0.5344 -8.1047 0.0809 24 1 2.5522 -8.9753 1.1067 25 1 0.8029 -8.0219 2.4894 26 6 2.6218 -3.3804 1.2657 27 6 1.8281 -2.0702 1.2508 28 1 -0.3633 0.0956 1.0232 29 1 -0.3634 0.8382 -0.5944 30 1 -0.3634 -0.9340 -0.4288 31 1 2.9935 3.9213 -0.1981 32 1 -1.2194 7.0202 0.5637 33 1 -2.3074 4.6604 0.8027 34 1 3.2690 -1.0693 0.0000 35 1 0.7609 -2.2925 -1.2372 36 1 2.0698 -1.4903 -2.1391 37 1 3.6851 -3.1636 -1.3659 38 1 2.2936 -4.0014 -2.0970 39 1 3.4606 -6.4558 2.6450 40 1 3.6848 -3.1626 1.3687 41 1 2.2925 -3.9977 2.1015 42 1 2.0697 -1.4885 2.1405 43 1 0.7608 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005461613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:05 Heat of formation + Delta-G solvation = 75.313172 kcal Electronic energy + Delta-G solvation = -26511.990844 eV Core-core repulsion = 22754.796605 eV Total energy + Delta-G solvation = -3757.194239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.15019 -40.59362 -38.89044 -37.38311 -35.34849 -32.73713 -32.50889 -30.99212 -30.24942 -29.69458 -28.40012 -27.24555 -25.34687 -23.67690 -22.23447 -21.90617 -21.48862 -20.88224 -19.73598 -19.06629 -17.90925 -17.33117 -16.85744 -16.49049 -16.15337 -15.57179 -15.40510 -14.91066 -14.54263 -13.94793 -13.86781 -13.66454 -13.63738 -13.50981 -13.15961 -13.07021 -13.02743 -12.61484 -12.44587 -12.27294 -11.83856 -11.54769 -11.10624 -10.89686 -10.79606 -10.44889 -10.30361 -10.24161 -10.13744 -10.02781 -9.80349 -9.61600 -8.81036 -8.65381 -8.46436 -8.04221 -6.69244 -5.82071 -3.30334 0.82189 2.04189 2.31737 2.46147 2.63022 3.10250 3.25291 3.33418 3.40935 3.42746 4.29497 4.38084 4.44444 4.67698 4.72915 5.02948 5.05254 5.19024 5.24784 5.29298 5.36388 5.44953 5.45538 5.54582 5.59757 5.78561 5.88915 6.00635 6.09536 6.11725 6.24271 6.38601 6.43998 6.50028 6.56133 6.71942 6.80721 6.90524 6.93333 7.08528 7.30630 7.37221 7.66844 7.74598 8.08385 8.43018 9.17831 9.79032 10.36436 11.25800 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033833 B = 0.002625 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.385612 B =10665.023220 C =10949.515379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.604 5.604 3 C 0.585 3.415 4 O -0.521 6.521 5 C 0.015 3.985 6 C -0.084 4.084 7 C -0.040 4.040 8 O -0.169 6.169 9 C 0.008 3.992 10 C -0.202 4.202 11 C 0.001 3.999 12 N -0.537 5.537 13 H 0.425 0.575 14 C 0.146 3.854 15 C -0.139 4.139 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.173 3.827 27 C -0.146 4.146 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.211 0.789 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.058 0.942 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 20.591 -2.774 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.336 5.336 3 C 0.373 3.627 4 O -0.397 6.397 5 C -0.098 4.098 6 C -0.112 4.112 7 C -0.091 4.091 8 O -0.067 6.067 9 C -0.060 4.060 10 C -0.223 4.223 11 C -0.112 4.112 12 N -0.149 5.149 13 H 0.272 0.728 14 C 0.044 3.956 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.046 3.954 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.178 0.822 32 H 0.228 0.772 33 H 0.170 0.830 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.890 20.509 -2.722 22.931 hybrid contribution -1.144 -1.164 0.324 1.664 sum -11.034 19.345 -2.398 22.399 Atomic orbital electron populations 1.22119 0.81186 1.04172 1.01278 1.48059 1.06379 1.06550 1.72568 1.16929 0.86712 0.81711 0.77392 1.90871 1.12524 1.86231 1.50064 1.20382 0.82106 0.94776 1.12489 1.19898 0.98093 0.86104 1.07060 1.19321 0.96125 0.81319 1.12377 1.84018 1.25442 1.23477 1.73749 1.24034 0.80639 0.99436 1.01847 1.20550 0.99174 0.89954 1.12664 1.19150 0.96675 0.85110 1.10241 1.42463 1.08297 1.05380 1.58784 0.72794 1.21319 0.97375 0.80223 0.96650 1.22388 1.01294 0.98200 0.95987 1.20877 0.95902 0.90795 0.90409 1.44078 1.77782 1.10321 0.99409 1.19225 1.24405 0.86149 1.08355 0.91658 1.25169 0.97142 0.97825 0.99461 1.69959 1.31937 1.36393 1.16690 0.86176 0.78645 0.84119 0.77538 1.20283 1.21593 1.21611 1.20831 0.95289 0.88442 0.90827 1.22606 1.01655 0.99163 0.95194 0.92253 0.91303 0.88777 0.82210 0.77242 0.82964 0.88228 0.92135 0.92727 0.96034 0.92376 0.93552 0.96110 0.88519 0.93038 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 7.86 59.84 0.47 1.05 16 2 N -0.60 -8.63 2.76 -175.50 -0.48 -9.12 16 3 C 0.58 9.10 7.63 -12.93 -0.10 9.00 16 4 O -0.52 -9.85 16.22 5.17 0.08 -9.77 16 5 C 0.01 0.20 6.63 -81.86 -0.54 -0.34 16 6 C -0.08 -1.11 10.59 -39.11 -0.41 -1.53 16 7 C -0.04 -0.50 8.20 -38.61 -0.32 -0.82 16 8 O -0.17 -1.88 10.68 3.20 0.03 -1.85 16 9 C 0.01 0.06 12.02 29.40 0.35 0.42 16 10 C -0.20 -1.67 10.89 -39.70 -0.43 -2.10 16 11 C 0.00 0.02 8.11 -83.96 -0.68 -0.66 16 12 N -0.54 -5.80 5.15 -7.04 -0.04 -5.84 16 13 H 0.43 3.56 4.83 -40.82 -0.20 3.37 16 14 C 0.15 2.49 2.47 -67.89 -0.17 2.33 16 15 C -0.14 -2.34 5.32 -26.61 -0.14 -2.48 16 16 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 17 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 18 C -0.25 -6.70 9.60 -15.06 -0.14 -6.85 16 19 H 0.07 1.71 7.85 -52.48 -0.41 1.29 16 20 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 21 N -0.91 -25.81 10.91 55.49 0.61 -25.21 16 22 Si 0.91 21.24 29.56 -169.99 -5.03 16.22 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.17 4.03 5.26 -3.71 -0.02 4.01 16 27 C -0.15 -2.70 5.34 -26.62 -0.14 -2.84 16 28 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 29 H 0.07 0.58 5.49 -51.93 -0.29 0.30 16 30 H 0.09 0.96 6.47 -51.92 -0.34 0.63 16 31 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 32 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 35 H 0.06 0.98 6.72 -51.93 -0.35 0.63 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 2.53 5.99 -51.93 -0.31 2.22 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -32.61 343.60 -8.10 -40.70 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.55 Total: 2.50 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.39 Total: 2.14 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.43 Total: -55.11 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.12 Total: -11.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.61 -8.10 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005461613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.017 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds