Wall clock time and date at job start Tue Mar 31 2020 11:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34782 * 120.00102 * 2 1 4 4 O 1.21721 * 120.00320 * 185.53853 * 3 2 1 5 5 C 1.46488 * 119.99568 * 5.53863 * 3 2 1 6 6 C 1.37783 * 125.85830 * 186.93940 * 5 3 2 7 7 C 1.39934 * 107.68798 * 179.97438 * 6 5 3 8 8 O 1.35124 * 145.14040 * 179.97438 * 7 6 5 9 9 C 1.34375 * 109.62559 * 180.02562 * 8 7 6 10 10 C 1.34469 * 109.44493 * 0.02562 * 9 8 7 11 11 C 1.39134 * 107.40621 * 0.02562 * 7 6 5 12 12 N 1.37112 * 108.10695 * 359.77049 * 11 7 6 13 13 H 0.97002 * 125.74118 * 180.22624 * 12 11 7 14 14 C 1.46507 * 120.00279 * 179.97438 * 2 1 3 15 15 C 1.53042 * 109.45724 * 60.02563 * 14 2 1 16 16 C 1.53188 * 109.30934 * 178.59897 * 15 14 2 17 17 N 1.46926 * 108.76695 * 54.66142 * 16 15 14 18 18 C 1.36932 * 120.63290 * 126.40098 * 17 16 15 19 19 H 1.08004 * 120.00171 * 329.63019 * 18 17 16 20 20 C 1.38811 * 120.00041 * 149.63522 * 18 17 16 21 21 N 1.31624 * 120.00099 * 350.38065 * 20 18 17 22 22 Si 1.86794 * 120.00285 * 170.38436 * 20 18 17 23 23 H 1.48499 * 109.47203 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47508 * 119.99843 * 22 20 18 25 25 H 1.48506 * 109.47033 * 239.99638 * 22 20 18 26 26 C 1.46932 * 118.73508 * 306.38181 * 17 16 15 27 27 C 1.53036 * 109.46044 * 299.97597 * 14 2 1 28 28 H 1.09001 * 109.47126 * 275.33741 * 1 2 3 29 29 H 1.08993 * 109.47426 * 35.33938 * 1 2 3 30 30 H 1.09008 * 109.47113 * 155.34113 * 1 2 3 31 31 H 1.08006 * 126.15638 * 359.97438 * 6 5 3 32 32 H 1.07998 * 125.27685 * 180.02562 * 9 8 7 33 33 H 1.08002 * 126.40824 * 179.97438 * 10 9 8 34 34 H 1.08994 * 109.45777 * 179.97438 * 14 2 1 35 35 H 1.08991 * 109.50205 * 298.57078 * 15 14 2 36 36 H 1.09005 * 109.49331 * 58.66718 * 15 14 2 37 37 H 1.09001 * 109.60543 * 294.86934 * 16 15 14 38 38 H 1.09004 * 109.70340 * 174.50714 * 16 15 14 39 39 H 0.96997 * 120.00616 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.58049 * 293.81861 * 26 17 16 41 41 H 1.09001 * 109.70240 * 173.46315 * 26 17 16 42 42 H 1.09006 * 109.49956 * 301.33630 * 27 14 2 43 43 H 1.09001 * 109.50108 * 61.39555 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1697 -0.1017 5 6 1.4115 2.4329 0.1224 6 6 1.9571 3.6923 0.0021 7 6 0.9270 4.6213 0.1861 8 8 0.6132 5.9349 0.2290 9 6 -0.6997 6.0774 0.4772 10 6 -1.2661 4.8642 0.6013 11 6 -0.2429 3.9050 0.4187 12 7 0.0597 2.5685 0.3736 13 1 -0.5691 1.8406 0.4989 14 6 2.1975 -1.2688 0.0006 15 6 1.8281 -2.0713 -1.2491 16 6 2.6221 -3.3813 -1.2629 17 7 2.3850 -4.0910 0.0016 18 6 1.9520 -5.3901 0.0020 19 1 1.3329 -5.7532 -0.8050 20 6 2.3088 -6.2403 1.0397 21 7 3.2110 -5.8616 1.9201 22 14 1.5087 -7.9218 1.1866 23 1 0.5344 -8.1047 0.0809 24 1 2.5522 -8.9753 1.1067 25 1 0.8029 -8.0219 2.4894 26 6 2.6218 -3.3804 1.2657 27 6 1.8281 -2.0702 1.2508 28 1 -0.3633 0.0956 1.0232 29 1 -0.3634 0.8382 -0.5944 30 1 -0.3634 -0.9340 -0.4288 31 1 2.9935 3.9213 -0.1981 32 1 -1.2194 7.0202 0.5637 33 1 -2.3074 4.6604 0.8027 34 1 3.2690 -1.0693 0.0000 35 1 0.7609 -2.2925 -1.2372 36 1 2.0698 -1.4903 -2.1391 37 1 3.6851 -3.1636 -1.3659 38 1 2.2936 -4.0014 -2.0970 39 1 3.4606 -6.4558 2.6450 40 1 3.6848 -3.1626 1.3687 41 1 2.2925 -3.9977 2.1015 42 1 2.0697 -1.4885 2.1405 43 1 0.7608 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005461613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:05 Heat of formation + Delta-G solvation = 54.768972 kcal Electronic energy + Delta-G solvation = -26512.881708 eV Core-core repulsion = 22754.796605 eV Total energy + Delta-G solvation = -3758.085103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.94637 -41.66659 -39.98718 -38.87035 -36.77941 -34.40742 -33.30832 -32.28610 -31.67951 -31.28653 -29.36311 -28.26670 -27.01491 -24.95376 -23.88526 -23.14994 -22.52821 -21.72635 -20.84736 -20.56944 -18.78370 -18.75783 -18.25593 -17.44736 -17.30993 -16.84584 -16.52614 -16.38454 -15.80889 -15.38252 -15.23889 -14.92802 -14.81680 -14.63682 -14.47480 -14.17931 -14.12596 -14.06111 -13.65036 -13.22818 -13.20491 -12.95690 -12.69835 -12.65945 -12.53410 -12.14312 -11.95175 -11.90361 -11.53453 -11.41909 -11.19710 -11.07028 -10.59159 -9.82510 -9.64144 -8.88108 -8.68074 -7.86608 -5.38233 -0.08029 1.18403 1.47309 1.49071 1.52457 1.59372 1.60382 1.70025 2.13098 2.22487 2.50729 3.30252 3.36558 3.63680 3.66581 3.86313 3.90788 3.95838 3.99794 4.28147 4.30082 4.34794 4.43667 4.46173 4.55254 4.64698 4.67941 4.76849 4.78052 4.84446 5.00090 5.02973 5.03976 5.11571 5.27804 5.36318 5.45962 5.48473 5.60027 5.63967 5.72713 6.14043 6.20211 6.34103 6.40702 6.90340 7.14613 7.82993 8.36429 9.19684 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033833 B = 0.002625 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.385612 B =10665.023220 C =10949.515379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.600 5.600 3 C 0.584 3.416 4 O -0.567 6.567 5 C -0.003 4.003 6 C -0.092 4.092 7 C -0.076 4.076 8 O -0.187 6.187 9 C 0.028 3.972 10 C -0.214 4.214 11 C 0.009 3.991 12 N -0.524 5.524 13 H 0.436 0.564 14 C 0.155 3.845 15 C -0.122 4.122 16 C 0.143 3.857 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.940 5.940 22 Si 0.972 3.028 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.180 3.820 27 C -0.127 4.127 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.155 0.845 32 H 0.260 0.740 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.065 0.935 39 H 0.250 0.750 40 H -0.012 1.012 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.453 22.317 -3.343 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.330 5.330 3 C 0.374 3.626 4 O -0.447 6.447 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.127 4.127 8 O -0.085 6.085 9 C -0.038 4.038 10 C -0.235 4.235 11 C -0.105 4.105 12 N -0.137 5.137 13 H 0.286 0.714 14 C 0.052 3.948 15 C -0.162 4.162 16 C 0.017 3.983 17 N -0.333 5.333 18 C -0.388 4.388 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.217 1.217 26 C 0.053 3.947 27 C -0.167 4.167 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.173 0.827 32 H 0.275 0.725 33 H 0.202 0.798 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.007 0.993 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.668 22.238 -3.315 26.312 hybrid contribution -0.017 -1.532 0.480 1.606 sum -13.685 20.706 -2.835 24.981 Atomic orbital electron populations 1.22429 0.78250 1.05512 1.03210 1.47924 1.08046 1.05002 1.72069 1.17187 0.86286 0.82558 0.76546 1.90842 1.14574 1.86926 1.52312 1.19854 0.83234 0.93460 1.15017 1.20000 0.98421 0.86873 1.06765 1.19391 0.96576 0.82333 1.14432 1.84027 1.27523 1.22744 1.74223 1.25130 0.79076 1.01299 0.98340 1.21017 1.00203 0.89079 1.13166 1.19674 0.97219 0.85081 1.08532 1.42330 1.07400 1.05834 1.58162 0.71439 1.20914 0.96273 0.81462 0.96104 1.22183 1.01469 0.96102 0.96433 1.21011 0.95855 0.92422 0.89030 1.44319 1.77921 1.10263 1.00749 1.19586 1.23902 0.87118 1.08189 0.91021 1.25950 0.97954 1.01382 0.99503 1.70145 1.33658 1.37499 1.17329 0.85139 0.77650 0.79596 0.77646 1.18717 1.22254 1.21687 1.20569 0.94071 0.90191 0.89852 1.22314 1.01410 0.96704 0.96310 0.90162 0.89193 0.88082 0.82734 0.72451 0.79775 0.91211 0.90431 0.90991 0.97426 0.91642 0.94113 0.99348 0.91535 0.92510 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 7.86 127.77 1.00 1.84 16 2 N -0.60 -16.48 2.76 -827.36 -2.28 -18.76 16 3 C 0.58 18.25 7.63 86.39 0.66 18.91 16 4 O -0.57 -22.39 16.22 -4.42 -0.07 -22.46 16 5 C 0.00 -0.09 6.63 40.19 0.27 0.18 16 6 C -0.09 -2.48 10.59 22.57 0.24 -2.24 16 7 C -0.08 -1.85 8.20 22.90 0.19 -1.66 16 8 O -0.19 -3.78 10.68 -11.45 -0.12 -3.90 16 9 C 0.03 0.31 12.02 66.96 0.80 1.11 16 10 C -0.21 -2.66 10.89 22.19 0.24 -2.42 16 11 C 0.01 0.19 8.11 39.32 0.32 0.51 16 12 N -0.52 -10.16 5.15 -176.20 -0.91 -11.07 16 13 H 0.44 5.93 4.83 -92.71 -0.45 5.48 16 14 C 0.16 5.29 2.47 45.02 0.11 5.40 16 15 C -0.12 -3.96 5.32 30.67 0.16 -3.79 16 16 C 0.14 5.86 6.52 86.36 0.56 6.42 16 17 N -0.61 -30.07 2.99 -699.09 -2.09 -32.16 16 18 C -0.26 -13.78 9.60 84.03 0.81 -12.97 16 19 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 20 C -0.05 -2.91 5.08 84.86 0.43 -2.48 16 21 N -0.94 -55.41 10.91 21.65 0.24 -55.17 16 22 Si 0.97 44.00 29.56 68.60 2.03 46.03 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 26 C 0.18 8.70 5.26 86.36 0.45 9.16 16 27 C -0.13 -4.71 5.34 30.67 0.16 -4.54 16 28 H 0.08 1.11 7.54 -2.39 -0.02 1.10 16 29 H 0.09 1.22 5.49 -2.39 -0.01 1.21 16 30 H 0.10 1.69 6.47 -2.38 -0.02 1.68 16 31 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.26 -0.09 8.06 -2.91 -0.02 -0.12 16 33 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.07 2.84 6.91 -2.39 -0.02 2.82 16 35 H 0.08 2.29 6.72 -2.39 -0.02 2.27 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 39 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.07 3.63 5.99 -2.39 -0.01 3.61 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.07 2.45 7.72 -2.39 -0.02 2.43 16 Total: -1.00 -74.55 343.60 3.80 -70.75 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.60 Total: 13.33 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.41 Total: 13.42 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -5.05 Total: -117.17 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.19 Total: -26.36 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.55 3.80 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005461613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.521 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds