Wall clock time and date at job start Tue Mar 31 2020 11:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99817 * 2 1 4 4 N 1.34782 * 119.99871 * 179.97438 * 2 1 3 5 5 C 1.39435 * 119.99913 * 183.92915 * 4 2 1 6 6 C 1.39130 * 119.92556 * 144.01169 * 5 4 2 7 7 C 1.37669 * 120.07159 * 179.97438 * 6 5 4 8 8 C 1.39747 * 119.92909 * 0.02562 * 7 6 5 9 9 C 1.47599 * 120.07468 * 179.97438 * 8 7 6 10 10 O 1.21587 * 119.99931 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00267 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00136 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.64094 * 328.14137 * 12 11 9 14 14 C 1.55157 * 110.72105 * 204.99415 * 12 11 9 15 15 C 1.54902 * 101.58440 * 276.96465 * 14 12 11 16 16 N 1.47424 * 104.83288 * 322.98558 * 15 14 12 17 17 C 1.36938 * 125.64983 * 204.10828 * 16 15 14 18 18 H 1.08002 * 119.99668 * 170.20663 * 17 16 15 19 19 C 1.38808 * 120.00136 * 350.20179 * 17 16 15 20 20 N 1.31624 * 119.99877 * 345.60678 * 19 17 16 21 21 Si 1.86801 * 120.00015 * 165.60670 * 19 17 16 22 22 H 1.48498 * 109.46897 * 94.98589 * 21 19 17 23 23 H 1.48506 * 109.46848 * 214.98513 * 21 19 17 24 24 H 1.48493 * 109.47095 * 334.98676 * 21 19 17 25 25 C 1.47022 * 108.70039 * 24.13218 * 16 15 14 26 26 C 1.39747 * 119.85465 * 0.27577 * 8 7 6 27 27 C 1.37672 * 119.92124 * 359.44582 * 26 8 7 28 28 H 1.09002 * 109.46742 * 270.00134 * 1 2 3 29 29 H 1.08991 * 109.46737 * 30.00362 * 1 2 3 30 30 H 1.09000 * 109.46636 * 150.00596 * 1 2 3 31 31 H 0.97000 * 120.00060 * 3.93709 * 4 2 1 32 32 H 1.07996 * 119.96369 * 359.96044 * 6 5 4 33 33 H 1.08013 * 120.03644 * 180.02562 * 7 6 5 34 34 H 0.97000 * 119.99659 * 359.97438 * 11 9 8 35 35 H 1.09002 * 110.99991 * 35.04245 * 14 12 11 36 36 H 1.09002 * 111.00320 * 158.88462 * 14 12 11 37 37 H 1.08998 * 110.37078 * 81.82665 * 15 14 12 38 38 H 1.09006 * 110.36584 * 204.14991 * 15 14 12 39 39 H 0.97004 * 119.99895 * 180.02562 * 20 19 17 40 40 H 1.08994 * 109.88092 * 239.51989 * 25 16 15 41 41 H 1.09003 * 109.88426 * 118.35882 * 25 16 15 42 42 H 1.07997 * 120.04313 * 179.72356 * 26 8 7 43 43 H 1.07999 * 119.96182 * 180.24956 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1673 0.0005 5 6 3.5729 -1.1687 0.0833 6 6 4.2247 -2.1684 0.7984 7 6 5.5988 -2.1730 0.8816 8 6 6.3391 -1.1717 0.2473 9 6 7.8125 -1.1732 0.3349 10 8 8.3835 -2.0465 0.9591 11 7 8.5250 -0.2065 -0.2770 12 6 9.9874 -0.2084 -0.1905 13 1 10.3154 -0.6258 0.7614 14 6 10.5506 1.2242 -0.3851 15 6 10.5799 1.3399 -1.9295 16 7 10.9678 -0.0020 -2.4011 17 6 11.5649 -0.2846 -3.6006 18 1 11.9537 -1.2742 -3.7903 19 6 11.6702 0.7006 -4.5727 20 7 10.9620 1.8052 -4.4696 21 14 12.8172 0.4588 -6.0272 22 1 12.0525 -0.0938 -7.1740 23 1 13.4113 1.7645 -6.4114 24 1 13.8994 -0.4864 -5.6524 25 6 10.6070 -0.9864 -1.3705 26 6 5.6810 -0.1654 -0.4649 27 6 4.3069 -0.1699 -0.5490 28 1 -0.3633 0.0000 1.0277 29 1 -0.3632 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5138 31 1 1.6977 -2.0063 -0.0568 32 1 3.6520 -2.9415 1.2889 33 1 6.1043 -2.9496 1.4366 34 1 8.0694 0.4900 -0.7753 35 1 9.8836 1.9686 0.0499 36 1 11.5539 1.3096 0.0323 37 1 9.5930 1.6047 -2.3090 38 1 11.3179 2.0793 -2.2406 39 1 11.0353 2.4936 -5.1492 40 1 11.4984 -1.5176 -1.0370 41 1 9.8801 -1.6931 -1.7711 42 1 6.2499 0.6124 -0.9525 43 1 3.7978 0.6052 -1.1026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016080007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:32 Heat of formation + Delta-G solvation = -14.480941 kcal Electronic energy + Delta-G solvation = -25712.552216 eV Core-core repulsion = 21951.464212 eV Total energy + Delta-G solvation = -3761.088004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89867 -39.81312 -38.27209 -37.07669 -35.07244 -33.83896 -32.00987 -31.24807 -30.96877 -29.36236 -28.81562 -27.18840 -24.59093 -23.71780 -23.05037 -21.21531 -20.47825 -20.23795 -19.78856 -18.24386 -17.69669 -17.28571 -16.74261 -16.14784 -15.71714 -14.89311 -14.76307 -14.67902 -14.57394 -14.45921 -13.85326 -13.79032 -13.63310 -13.28798 -13.13248 -12.99724 -12.62365 -12.57983 -12.37490 -11.94479 -11.67087 -11.46842 -11.07582 -10.82898 -10.75536 -10.64464 -10.40623 -10.23335 -10.07240 -10.00421 -9.67598 -9.63115 -9.14115 -8.71655 -8.54756 -8.35952 -6.79683 -5.75878 -3.05129 0.68296 1.26049 2.12063 2.64634 3.00131 3.40500 3.45890 3.47170 3.49705 3.86558 4.26114 4.51758 4.63128 4.70806 4.80882 4.87183 4.89036 5.16567 5.20288 5.28224 5.34961 5.37677 5.45335 5.48322 5.75624 5.82495 5.87127 6.00159 6.04388 6.21140 6.26103 6.28145 6.34456 6.47966 6.56598 6.74194 6.76335 6.94176 7.07395 7.42342 7.51485 7.67554 7.76997 7.83931 8.25125 8.48893 9.19447 9.82189 10.49640 11.38244 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002759 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.256568 B =10144.572824 C =11036.207001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.521 6.521 4 N -0.674 5.674 5 C 0.160 3.840 6 C -0.155 4.155 7 C -0.042 4.042 8 C -0.142 4.142 9 C 0.558 3.442 10 O -0.547 6.547 11 N -0.704 5.704 12 C 0.132 3.868 13 H 0.092 0.908 14 C -0.155 4.155 15 C 0.172 3.828 16 N -0.601 5.601 17 C -0.228 4.228 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.126 3.874 26 C -0.064 4.064 27 C -0.127 4.127 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.412 0.588 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.252 0.748 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.133 0.867 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.235 -4.992 11.488 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.396 6.396 4 N -0.320 5.320 5 C 0.065 3.935 6 C -0.175 4.175 7 C -0.062 4.062 8 C -0.146 4.146 9 C 0.345 3.655 10 O -0.426 6.426 11 N -0.355 5.355 12 C 0.027 3.973 13 H 0.110 0.890 14 C -0.194 4.194 15 C 0.047 3.953 16 N -0.328 5.328 17 C -0.356 4.356 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.563 5.563 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.001 4.001 26 C -0.083 4.083 27 C -0.147 4.147 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.249 0.751 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.151 0.849 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.393 -4.704 11.739 23.996 hybrid contribution 0.004 -0.202 -1.205 1.222 sum -20.389 -4.906 10.534 23.468 Atomic orbital electron populations 1.21894 0.90518 1.05400 1.05204 1.21073 0.90988 0.83126 0.75139 1.90772 1.70406 1.31207 1.47196 1.43568 1.05164 1.10092 1.73178 1.17918 0.82553 0.96808 0.96218 1.20831 0.94663 1.00535 1.01480 1.21043 0.92574 0.96792 0.95760 1.20051 0.93396 0.98060 1.03085 1.18139 0.86630 0.81691 0.79004 1.90744 1.71974 1.36882 1.43004 1.45919 1.07609 1.28931 1.53008 1.21993 0.78302 0.97726 0.99289 0.89023 1.23332 1.00588 0.94307 1.01189 1.21373 0.99229 0.88551 0.86144 1.44507 1.70950 1.01279 1.16074 1.19007 1.29191 0.97405 0.90044 0.90660 1.24778 1.00149 0.97414 0.98047 1.69979 1.41547 1.09061 1.35748 0.86167 0.80751 0.76923 0.82340 1.21708 1.21608 1.20595 1.21705 0.96523 0.92649 0.89198 1.21305 0.94197 0.96876 0.95937 1.21166 0.93493 0.99767 1.00280 0.88396 0.88355 0.89837 0.75140 0.85148 0.84195 0.76351 0.91494 0.90520 0.95501 0.91609 0.93767 0.94945 0.95527 0.84928 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.31 36.01 0.37 -0.24 16 2 C 0.51 4.22 7.77 -10.98 -0.09 4.13 16 3 O -0.52 -6.80 14.59 5.56 0.08 -6.72 16 4 N -0.67 -4.82 5.31 -9.85 -0.05 -4.88 16 5 C 0.16 1.66 6.28 -83.74 -0.53 1.14 16 6 C -0.15 -1.51 9.95 -39.46 -0.39 -1.90 16 7 C -0.04 -0.52 9.58 -39.23 -0.38 -0.89 16 8 C -0.14 -2.02 5.88 -104.95 -0.62 -2.64 16 9 C 0.56 9.48 7.76 -12.44 -0.10 9.39 16 10 O -0.55 -10.75 15.98 5.29 0.08 -10.66 16 11 N -0.70 -11.87 5.05 -53.05 -0.27 -12.14 16 12 C 0.13 2.43 3.32 -66.10 -0.22 2.21 16 13 H 0.09 1.65 7.55 -51.93 -0.39 1.26 16 14 C -0.16 -2.81 6.67 -24.59 -0.16 -2.97 16 15 C 0.17 4.03 5.38 -2.53 -0.01 4.01 16 16 N -0.60 -15.46 3.39 -170.08 -0.58 -16.04 16 17 C -0.23 -6.45 10.21 -15.06 -0.15 -6.60 16 18 H 0.08 2.09 7.87 -52.49 -0.41 1.68 16 19 C -0.01 -0.20 5.34 -17.43 -0.09 -0.30 16 20 N -0.92 -26.75 10.88 55.49 0.60 -26.14 16 21 Si 0.91 22.22 29.58 -169.99 -5.03 17.19 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.79 6.99 -3.06 -0.02 2.77 16 26 C -0.06 -0.83 9.53 -39.22 -0.37 -1.21 16 27 C -0.13 -1.58 8.66 -39.45 -0.34 -1.92 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.41 1.38 8.82 -40.82 -0.36 1.02 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 1.66 7.64 -52.48 -0.40 1.26 16 34 H 0.40 6.25 6.66 -40.82 -0.27 5.98 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 38 H 0.07 1.71 7.09 -51.93 -0.37 1.35 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 42 H 0.13 1.62 6.39 -52.49 -0.34 1.28 16 43 H 0.14 1.85 6.29 -52.49 -0.33 1.52 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -35.77 359.35 -8.64 -44.42 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.80 Total: 4.58 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.10 Total: 4.97 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.29 Total: -59.19 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.17 Total: -17.38 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.77 -8.64 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016080007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.934 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds