Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99817 * 2 1 4 4 N 1.34782 * 119.99871 * 179.97438 * 2 1 3 5 5 C 1.39435 * 119.99913 * 183.92915 * 4 2 1 6 6 C 1.39130 * 119.92556 * 144.01169 * 5 4 2 7 7 C 1.37669 * 120.07159 * 179.97438 * 6 5 4 8 8 C 1.39747 * 119.92909 * 0.02562 * 7 6 5 9 9 C 1.47599 * 120.07468 * 179.97438 * 8 7 6 10 10 O 1.21587 * 119.99931 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00267 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00136 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.64094 * 328.14137 * 12 11 9 14 14 C 1.55157 * 110.72105 * 204.99415 * 12 11 9 15 15 C 1.54902 * 101.58440 * 276.96465 * 14 12 11 16 16 N 1.47424 * 104.83288 * 322.98558 * 15 14 12 17 17 C 1.36938 * 125.64983 * 204.10828 * 16 15 14 18 18 H 1.08002 * 119.99668 * 170.20663 * 17 16 15 19 19 C 1.38808 * 120.00136 * 350.20179 * 17 16 15 20 20 N 1.31624 * 119.99877 * 345.60678 * 19 17 16 21 21 Si 1.86801 * 120.00015 * 165.60670 * 19 17 16 22 22 H 1.48498 * 109.46897 * 94.98589 * 21 19 17 23 23 H 1.48506 * 109.46848 * 214.98513 * 21 19 17 24 24 H 1.48493 * 109.47095 * 334.98676 * 21 19 17 25 25 C 1.47022 * 108.70039 * 24.13218 * 16 15 14 26 26 C 1.39747 * 119.85465 * 0.27577 * 8 7 6 27 27 C 1.37672 * 119.92124 * 359.44582 * 26 8 7 28 28 H 1.09002 * 109.46742 * 270.00134 * 1 2 3 29 29 H 1.08991 * 109.46737 * 30.00362 * 1 2 3 30 30 H 1.09000 * 109.46636 * 150.00596 * 1 2 3 31 31 H 0.97000 * 120.00060 * 3.93709 * 4 2 1 32 32 H 1.07996 * 119.96369 * 359.96044 * 6 5 4 33 33 H 1.08013 * 120.03644 * 180.02562 * 7 6 5 34 34 H 0.97000 * 119.99659 * 359.97438 * 11 9 8 35 35 H 1.09002 * 110.99991 * 35.04245 * 14 12 11 36 36 H 1.09002 * 111.00320 * 158.88462 * 14 12 11 37 37 H 1.08998 * 110.37078 * 81.82665 * 15 14 12 38 38 H 1.09006 * 110.36584 * 204.14991 * 15 14 12 39 39 H 0.97004 * 119.99895 * 180.02562 * 20 19 17 40 40 H 1.08994 * 109.88092 * 239.51989 * 25 16 15 41 41 H 1.09003 * 109.88426 * 118.35882 * 25 16 15 42 42 H 1.07997 * 120.04313 * 179.72356 * 26 8 7 43 43 H 1.07999 * 119.96182 * 180.24956 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1673 0.0005 5 6 3.5729 -1.1687 0.0833 6 6 4.2247 -2.1684 0.7984 7 6 5.5988 -2.1730 0.8816 8 6 6.3391 -1.1717 0.2473 9 6 7.8125 -1.1732 0.3349 10 8 8.3835 -2.0465 0.9591 11 7 8.5250 -0.2065 -0.2770 12 6 9.9874 -0.2084 -0.1905 13 1 10.3154 -0.6258 0.7614 14 6 10.5506 1.2242 -0.3851 15 6 10.5799 1.3399 -1.9295 16 7 10.9678 -0.0020 -2.4011 17 6 11.5649 -0.2846 -3.6006 18 1 11.9537 -1.2742 -3.7903 19 6 11.6702 0.7006 -4.5727 20 7 10.9620 1.8052 -4.4696 21 14 12.8172 0.4588 -6.0272 22 1 12.0525 -0.0938 -7.1740 23 1 13.4113 1.7645 -6.4114 24 1 13.8994 -0.4864 -5.6524 25 6 10.6070 -0.9864 -1.3705 26 6 5.6810 -0.1654 -0.4649 27 6 4.3069 -0.1699 -0.5490 28 1 -0.3633 0.0000 1.0277 29 1 -0.3632 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5138 31 1 1.6977 -2.0063 -0.0568 32 1 3.6520 -2.9415 1.2889 33 1 6.1043 -2.9496 1.4366 34 1 8.0694 0.4900 -0.7753 35 1 9.8836 1.9686 0.0499 36 1 11.5539 1.3096 0.0323 37 1 9.5930 1.6047 -2.3090 38 1 11.3179 2.0793 -2.2406 39 1 11.0353 2.4936 -5.1492 40 1 11.4984 -1.5176 -1.0370 41 1 9.8801 -1.6931 -1.7711 42 1 6.2499 0.6124 -0.9525 43 1 3.7978 0.6052 -1.1026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016080007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = -39.838555 kcal Electronic energy + Delta-G solvation = -25713.651805 eV Core-core repulsion = 21951.464212 eV Total energy + Delta-G solvation = -3762.187593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74810 -41.01898 -39.42743 -38.58670 -35.91146 -35.52082 -33.76086 -32.05223 -31.97807 -30.94880 -29.81819 -28.81802 -26.49817 -24.81924 -23.97223 -22.30368 -22.11324 -21.43033 -21.27086 -19.26559 -18.87565 -18.57048 -17.97371 -17.42746 -16.75042 -16.58435 -16.10218 -15.96002 -15.74087 -15.61055 -15.27883 -14.99405 -14.64547 -14.43560 -14.41781 -13.94219 -13.73302 -13.70016 -13.45324 -13.23954 -13.04309 -13.00365 -12.76069 -12.44680 -12.32317 -12.19435 -11.97802 -11.87611 -11.63912 -11.47484 -11.13161 -10.89862 -10.67696 -10.15620 -10.05684 -9.26933 -8.88586 -7.91885 -5.23422 -0.30182 0.34012 1.41695 1.45131 1.46381 1.56779 1.85550 2.07123 2.14845 2.48649 2.82430 3.27894 3.59512 3.68659 3.72868 3.80467 3.90348 3.90842 4.03667 4.24977 4.27538 4.36159 4.46444 4.54528 4.62949 4.67264 4.68275 4.89617 4.90950 4.97705 5.01285 5.07037 5.12504 5.19946 5.30704 5.36218 5.41387 5.53353 5.56462 5.68453 5.86842 6.17115 6.38770 6.50074 7.06125 7.09209 7.15031 7.73288 8.39930 9.20697 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002759 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.256568 B =10144.572824 C =11036.207001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.502 3.498 3 O -0.575 6.575 4 N -0.660 5.660 5 C 0.167 3.833 6 C -0.140 4.140 7 C -0.045 4.045 8 C -0.166 4.166 9 C 0.558 3.442 10 O -0.577 6.577 11 N -0.703 5.703 12 C 0.144 3.856 13 H 0.104 0.896 14 C -0.134 4.134 15 C 0.177 3.823 16 N -0.620 5.620 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.058 4.058 20 N -0.941 5.941 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.272 1.272 25 C 0.125 3.875 26 C -0.068 4.068 27 C -0.144 4.144 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.434 0.566 32 H 0.172 0.828 33 H 0.143 0.857 34 H 0.406 0.594 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.007 0.993 38 H 0.034 0.966 39 H 0.250 0.750 40 H 0.035 0.965 41 H 0.008 0.992 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.274 -6.153 12.490 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.454 6.454 4 N -0.307 5.307 5 C 0.071 3.929 6 C -0.160 4.160 7 C -0.065 4.065 8 C -0.169 4.169 9 C 0.348 3.652 10 O -0.459 6.459 11 N -0.354 5.354 12 C 0.039 3.961 13 H 0.122 0.878 14 C -0.172 4.172 15 C 0.052 3.948 16 N -0.346 5.346 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.252 4.252 20 N -0.589 5.589 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.197 1.197 25 C -0.002 4.002 26 C -0.087 4.087 27 C -0.164 4.164 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.274 0.726 32 H 0.189 0.811 33 H 0.161 0.839 34 H 0.243 0.757 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.025 0.975 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.026 0.974 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.479 -5.906 12.751 26.510 hybrid contribution 0.513 0.109 -1.520 1.608 sum -21.966 -5.797 11.231 25.342 Atomic orbital electron populations 1.21933 0.86442 1.06847 1.06759 1.22023 0.92837 0.82325 0.73458 1.90759 1.71789 1.33169 1.49640 1.43568 1.03807 1.11180 1.72143 1.18070 0.84184 0.95842 0.94823 1.21138 0.93742 1.00764 1.00338 1.21217 0.93717 0.96192 0.95376 1.19903 0.91722 0.99843 1.05469 1.18563 0.87806 0.80825 0.78030 1.90714 1.72838 1.37931 1.44418 1.45887 1.06983 1.29326 1.53189 1.21795 0.79163 0.97181 0.97983 0.87810 1.23189 1.02214 0.94859 0.96985 1.21220 0.96919 0.86909 0.89718 1.44775 1.70845 1.02932 1.16094 1.19323 1.29568 0.97536 0.91361 0.90955 1.25580 1.01548 0.97287 1.00793 1.70146 1.42592 1.09647 1.36516 0.85136 0.78823 0.76808 0.78967 1.21426 1.21551 1.19665 1.21800 0.96367 0.92280 0.89710 1.21287 0.94650 0.96779 0.96026 1.21187 0.93340 1.00603 1.01255 0.86572 0.88706 0.86601 0.72551 0.81068 0.83920 0.75739 0.88457 0.89178 0.97515 0.94739 0.94128 0.94720 0.97378 0.85098 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 10.31 71.24 0.73 0.09 16 2 C 0.50 7.37 7.77 87.66 0.68 8.05 16 3 O -0.58 -14.87 14.59 -3.02 -0.04 -14.91 16 4 N -0.66 -7.60 5.31 -303.48 -1.61 -9.21 16 5 C 0.17 3.16 6.28 38.36 0.24 3.40 16 6 C -0.14 -2.33 9.95 22.35 0.22 -2.11 16 7 C -0.05 -1.05 9.58 22.50 0.22 -0.84 16 8 C -0.17 -4.70 5.88 -20.08 -0.12 -4.82 16 9 C 0.56 19.11 7.76 86.71 0.67 19.78 16 10 O -0.58 -22.76 15.98 -3.99 -0.06 -22.83 16 11 N -0.70 -23.86 5.05 -440.01 -2.22 -26.08 16 12 C 0.14 5.27 3.32 46.18 0.15 5.42 16 13 H 0.10 3.62 7.55 -2.39 -0.02 3.60 16 14 C -0.13 -4.73 6.67 31.98 0.21 -4.52 16 15 C 0.18 8.49 5.38 86.85 0.47 8.95 16 16 N -0.62 -32.62 3.39 -692.00 -2.35 -34.97 16 17 C -0.25 -14.38 10.21 84.03 0.86 -13.52 16 18 H 0.07 4.10 7.87 -2.91 -0.02 4.08 16 19 C -0.06 -3.34 5.34 84.86 0.45 -2.88 16 20 N -0.94 -56.28 10.88 21.65 0.24 -56.04 16 21 Si 0.97 46.29 29.58 68.60 2.03 48.32 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 25 C 0.12 5.61 6.99 86.73 0.61 6.22 16 26 C -0.07 -1.81 9.53 22.50 0.21 -1.60 16 27 C -0.14 -3.57 8.66 22.35 0.19 -3.37 16 28 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.43 1.14 8.82 -92.71 -0.82 0.32 16 32 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.14 3.21 7.64 -2.90 -0.02 3.18 16 34 H 0.41 12.91 6.66 -92.71 -0.62 12.29 16 35 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.01 0.35 8.05 -2.39 -0.02 0.33 16 38 H 0.03 1.85 7.09 -2.38 -0.02 1.83 16 39 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 42 H 0.13 3.37 6.39 -2.91 -0.02 3.35 16 43 H 0.13 3.55 6.29 -2.91 -0.02 3.53 16 Total: -1.00 -80.57 359.35 1.40 -79.17 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.38 Total: 18.31 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 5.81 Total: 18.25 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -5.95 Total: -126.30 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.11 Total: -37.74 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -80.57 1.40 -79.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016080007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.331 kcal (2) G-P(sol) polarization free energy of solvation -80.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds