Wall clock time and date at job start Tue Mar 31 2020 11:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21293 * 120.00073 * 2 1 4 4 N 1.34771 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.39962 * 120.00092 * 184.61572 * 4 2 1 6 6 C 1.38985 * 119.99779 * 144.90393 * 5 4 2 7 7 C 1.38219 * 120.22259 * 179.97438 * 6 5 4 8 8 C 1.38019 * 120.22165 * 0.27400 * 7 6 5 9 9 C 1.39579 * 119.99570 * 359.47023 * 8 7 6 10 10 C 1.47859 * 120.11656 * 180.27555 * 9 8 7 11 11 O 1.21550 * 120.00373 * 180.22936 * 10 9 8 12 12 N 1.34780 * 119.99640 * 0.23732 * 10 9 8 13 13 C 1.46497 * 120.00136 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.88465 * 328.87777 * 13 12 10 15 15 C 1.55154 * 111.00605 * 204.99463 * 13 12 10 16 16 C 1.54321 * 102.94423 * 277.43059 * 15 13 12 17 17 N 1.47025 * 107.26877 * 337.80337 * 16 15 13 18 18 C 1.36940 * 125.64671 * 178.98846 * 17 16 15 19 19 H 1.07994 * 120.00119 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99957 * 359.97438 * 18 17 16 21 21 N 1.31619 * 119.99935 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47437 * 89.99938 * 22 20 18 24 24 H 1.48511 * 109.46817 * 209.99708 * 22 20 18 25 25 H 1.48497 * 109.47418 * 329.99387 * 22 20 18 26 26 C 1.47422 * 108.70453 * 358.94253 * 17 16 15 27 27 C 1.38594 * 119.99916 * 324.88642 * 5 4 2 28 28 H 1.09003 * 109.47353 * 270.00434 * 1 2 3 29 29 H 1.09001 * 109.47149 * 30.00412 * 1 2 3 30 30 H 1.09002 * 109.47044 * 150.00390 * 1 2 3 31 31 H 0.97000 * 120.00512 * 4.62072 * 4 2 1 32 32 H 1.07995 * 119.89368 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.89043 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.00368 * 179.73185 * 8 7 6 35 35 H 0.96998 * 120.00074 * 359.97438 * 12 10 9 36 36 H 1.09001 * 110.71681 * 35.78978 * 15 13 12 37 37 H 1.09003 * 110.71929 * 158.88698 * 15 13 12 38 38 H 1.08991 * 109.88506 * 97.22511 * 16 15 13 39 39 H 1.09007 * 109.88090 * 218.38944 * 16 15 13 40 40 H 0.96997 * 119.99688 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.36926 * 265.29004 * 26 17 16 42 42 H 1.09003 * 110.36461 * 142.96580 * 26 17 16 43 43 H 1.08005 * 120.11238 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.5770 -1.1691 0.0981 6 6 4.2234 -2.1816 0.7971 7 6 5.6020 -2.1884 0.8959 8 6 6.3457 -1.1866 0.3058 9 6 5.7065 -0.1682 -0.4030 10 6 6.5010 0.9031 -1.0413 11 8 5.9419 1.7912 -1.6545 12 7 7.8452 0.8945 -0.9434 13 6 8.6325 1.9555 -1.5763 14 1 8.1382 2.3222 -2.4759 15 6 10.0711 1.4677 -1.8918 16 6 10.8012 1.6500 -0.5445 17 7 10.0486 2.6492 0.2281 18 6 10.3574 3.0799 1.4908 19 1 9.7390 3.8212 1.9748 20 6 11.4654 2.5635 2.1486 21 7 12.2188 1.6596 1.5589 22 14 11.8862 3.1505 3.8713 23 1 11.2024 2.2887 4.8688 24 1 13.3552 3.0739 4.0753 25 1 11.4357 4.5555 4.0394 26 6 8.9071 3.1115 -0.5822 27 6 4.3150 -0.1615 -0.5027 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6983 -2.0059 -0.0668 32 1 3.6466 -2.9663 1.2640 33 1 6.0987 -2.9780 1.4401 34 1 7.4224 -1.1930 0.3889 35 1 8.2913 0.1859 -0.4538 36 1 10.0662 0.4189 -2.1888 37 1 10.5263 2.0845 -2.6667 38 1 10.8239 0.7038 -0.0041 39 1 11.8173 2.0044 -0.7184 40 1 12.9927 1.2986 2.0188 41 1 9.1687 4.0217 -1.1218 42 1 8.0366 3.2819 0.0513 43 1 3.8146 0.6263 -1.0463 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016242902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:38 Heat of formation + Delta-G solvation = -12.243766 kcal Electronic energy + Delta-G solvation = -26112.257524 eV Core-core repulsion = 22351.266531 eV Total energy + Delta-G solvation = -3760.990993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79193 -39.65611 -38.22603 -37.03815 -35.00208 -33.70878 -31.97591 -31.15955 -30.95424 -29.18067 -28.67419 -27.19483 -24.66175 -23.78115 -23.05206 -20.82107 -20.72858 -20.06011 -19.71564 -18.35760 -17.24988 -16.84547 -16.43441 -16.18564 -15.71984 -15.63761 -14.73006 -14.58170 -14.48683 -14.26639 -13.84280 -13.73423 -13.65204 -13.17028 -13.05515 -12.92958 -12.53538 -12.25578 -12.04053 -11.89757 -11.77203 -11.64797 -10.94609 -10.86321 -10.67959 -10.60538 -10.33106 -10.10916 -10.04776 -9.92494 -9.64842 -9.57442 -9.04157 -8.69363 -8.48143 -8.35854 -6.79301 -5.69820 -3.01942 0.80299 1.22396 2.28632 2.73971 3.05337 3.41704 3.47268 3.49222 3.52857 3.92606 4.39045 4.52683 4.71111 4.78044 4.79434 4.97743 5.06683 5.08200 5.28883 5.34861 5.38949 5.45340 5.50216 5.52025 5.78916 5.82221 5.87658 6.07988 6.15640 6.22505 6.28883 6.34770 6.41311 6.52826 6.56340 6.75355 6.82770 7.06130 7.10058 7.55705 7.58233 7.81745 7.82603 7.93164 8.27112 8.57470 9.24757 9.84467 10.50443 11.42239 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.003109 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.141613 B = 9002.597547 C = 9393.553020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.504 3.496 3 O -0.515 6.515 4 N -0.675 5.675 5 C 0.127 3.873 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.096 4.096 9 C -0.109 4.109 10 C 0.555 3.445 11 O -0.542 6.542 12 N -0.697 5.697 13 C 0.128 3.872 14 H 0.091 0.909 15 C -0.154 4.154 16 C 0.176 3.824 17 N -0.604 5.604 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.925 5.925 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.124 3.876 27 C -0.064 4.064 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.411 0.589 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.402 0.598 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.251 0.749 41 H 0.029 0.971 42 H 0.043 0.957 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 -12.896 -4.832 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.292 3.708 3 O -0.389 6.389 4 N -0.321 5.321 5 C 0.033 3.967 6 C -0.145 4.145 7 C -0.126 4.126 8 C -0.115 4.115 9 C -0.113 4.113 10 C 0.342 3.658 11 O -0.420 6.420 12 N -0.348 5.348 13 C 0.022 3.978 14 H 0.109 0.891 15 C -0.193 4.193 16 C 0.051 3.949 17 N -0.331 5.331 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.573 5.573 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.003 4.003 27 C -0.085 4.085 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.247 0.753 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.781 -11.477 -5.110 23.434 hybrid contribution 0.326 -0.562 1.325 1.476 sum -19.455 -12.039 -3.785 23.190 Atomic orbital electron populations 1.21880 0.90615 1.05261 1.05125 1.21084 0.90974 0.83248 0.75501 1.90831 1.70217 1.31143 1.46730 1.43580 1.04955 1.09938 1.73669 1.17615 0.82682 0.97469 0.98908 1.21034 0.95147 0.99231 0.99053 1.20893 0.93048 0.98902 0.99800 1.21429 1.00513 0.93392 0.96177 1.19945 0.93787 0.96434 1.01138 1.18162 0.82315 0.85052 0.80259 1.90752 1.71000 1.37456 1.42808 1.45752 1.05524 1.28747 1.54751 1.22166 0.91163 0.88521 0.95932 0.89067 1.23231 0.94501 1.00565 1.00962 1.21171 0.93896 0.93522 0.86303 1.44484 1.27585 1.46757 1.14244 1.19074 1.08055 1.18522 0.89405 0.90552 1.24765 0.97823 0.99313 0.98652 1.69951 1.18429 1.32013 1.36888 0.86123 0.77282 0.78216 0.84202 1.21693 1.21733 1.20741 1.21959 0.91521 0.93973 0.92850 1.21370 0.92241 0.98170 0.96707 0.88464 0.88405 0.89970 0.75346 0.85445 0.84881 0.85048 0.76227 0.91602 0.90881 0.93636 0.93733 0.93862 0.95347 0.93859 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.31 36.00 0.37 -0.48 16 2 C 0.50 5.13 7.78 -10.99 -0.09 5.04 16 3 O -0.52 -8.19 14.54 5.55 0.08 -8.11 16 4 N -0.67 -5.70 5.34 -9.89 -0.05 -5.75 16 5 C 0.13 1.48 6.29 -83.74 -0.53 0.95 16 6 C -0.12 -1.19 9.96 -39.31 -0.39 -1.58 16 7 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16 8 C -0.10 -1.24 9.54 -39.16 -0.37 -1.61 16 9 C -0.11 -1.72 5.87 -104.99 -0.62 -2.33 16 10 C 0.56 10.27 7.77 -12.32 -0.10 10.18 16 11 O -0.54 -11.71 15.99 5.32 0.09 -11.63 16 12 N -0.70 -12.37 5.14 -52.67 -0.27 -12.64 16 13 C 0.13 2.40 3.43 -65.78 -0.23 2.18 16 14 H 0.09 1.67 7.54 -51.93 -0.39 1.28 16 15 C -0.15 -2.79 6.55 -24.90 -0.16 -2.95 16 16 C 0.18 4.14 5.36 -3.06 -0.02 4.12 16 17 N -0.60 -15.49 3.39 -170.07 -0.58 -16.06 16 18 C -0.22 -6.28 10.28 -15.06 -0.15 -6.44 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.83 10.31 55.49 0.57 -26.26 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 C 0.12 2.76 6.93 -2.53 -0.02 2.75 16 27 C -0.06 -0.98 8.24 -38.98 -0.32 -1.30 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.41 1.69 8.82 -40.82 -0.36 1.33 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.58 6.40 -52.49 -0.34 1.25 16 35 H 0.40 6.64 6.70 -40.82 -0.27 6.37 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 39 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.15 2.69 5.81 -52.48 -0.31 2.39 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -36.59 358.80 -8.68 -45.27 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.79 Total: 5.78 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -3.11 Total: 6.63 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.33 Total: -60.71 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.17 Total: -19.74 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.59 -8.68 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016242902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.025 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds