Wall clock time and date at job start Tue Mar 31 2020 11:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21293 * 120.00073 * 2 1 4 4 N 1.34771 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.39962 * 120.00092 * 184.61572 * 4 2 1 6 6 C 1.38985 * 119.99779 * 144.90393 * 5 4 2 7 7 C 1.38219 * 120.22259 * 179.97438 * 6 5 4 8 8 C 1.38019 * 120.22165 * 0.27400 * 7 6 5 9 9 C 1.39579 * 119.99570 * 359.47023 * 8 7 6 10 10 C 1.47859 * 120.11656 * 180.27555 * 9 8 7 11 11 O 1.21550 * 120.00373 * 180.22936 * 10 9 8 12 12 N 1.34780 * 119.99640 * 0.23732 * 10 9 8 13 13 C 1.46497 * 120.00136 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.88465 * 328.87777 * 13 12 10 15 15 C 1.55154 * 111.00605 * 204.99463 * 13 12 10 16 16 C 1.54321 * 102.94423 * 277.43059 * 15 13 12 17 17 N 1.47025 * 107.26877 * 337.80337 * 16 15 13 18 18 C 1.36940 * 125.64671 * 178.98846 * 17 16 15 19 19 H 1.07994 * 120.00119 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99957 * 359.97438 * 18 17 16 21 21 N 1.31619 * 119.99935 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47437 * 89.99938 * 22 20 18 24 24 H 1.48511 * 109.46817 * 209.99708 * 22 20 18 25 25 H 1.48497 * 109.47418 * 329.99387 * 22 20 18 26 26 C 1.47422 * 108.70453 * 358.94253 * 17 16 15 27 27 C 1.38594 * 119.99916 * 324.88642 * 5 4 2 28 28 H 1.09003 * 109.47353 * 270.00434 * 1 2 3 29 29 H 1.09001 * 109.47149 * 30.00412 * 1 2 3 30 30 H 1.09002 * 109.47044 * 150.00390 * 1 2 3 31 31 H 0.97000 * 120.00512 * 4.62072 * 4 2 1 32 32 H 1.07995 * 119.89368 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.89043 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.00368 * 179.73185 * 8 7 6 35 35 H 0.96998 * 120.00074 * 359.97438 * 12 10 9 36 36 H 1.09001 * 110.71681 * 35.78978 * 15 13 12 37 37 H 1.09003 * 110.71929 * 158.88698 * 15 13 12 38 38 H 1.08991 * 109.88506 * 97.22511 * 16 15 13 39 39 H 1.09007 * 109.88090 * 218.38944 * 16 15 13 40 40 H 0.96997 * 119.99688 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.36926 * 265.29004 * 26 17 16 42 42 H 1.09003 * 110.36461 * 142.96580 * 26 17 16 43 43 H 1.08005 * 120.11238 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.5770 -1.1691 0.0981 6 6 4.2234 -2.1816 0.7971 7 6 5.6020 -2.1884 0.8959 8 6 6.3457 -1.1866 0.3058 9 6 5.7065 -0.1682 -0.4030 10 6 6.5010 0.9031 -1.0413 11 8 5.9419 1.7912 -1.6545 12 7 7.8452 0.8945 -0.9434 13 6 8.6325 1.9555 -1.5763 14 1 8.1382 2.3222 -2.4759 15 6 10.0711 1.4677 -1.8918 16 6 10.8012 1.6500 -0.5445 17 7 10.0486 2.6492 0.2281 18 6 10.3574 3.0799 1.4908 19 1 9.7390 3.8212 1.9748 20 6 11.4654 2.5635 2.1486 21 7 12.2188 1.6596 1.5589 22 14 11.8862 3.1505 3.8713 23 1 11.2024 2.2887 4.8688 24 1 13.3552 3.0739 4.0753 25 1 11.4357 4.5555 4.0394 26 6 8.9071 3.1115 -0.5822 27 6 4.3150 -0.1615 -0.5027 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6983 -2.0059 -0.0668 32 1 3.6466 -2.9663 1.2640 33 1 6.0987 -2.9780 1.4401 34 1 7.4224 -1.1930 0.3889 35 1 8.2913 0.1859 -0.4538 36 1 10.0662 0.4189 -2.1888 37 1 10.5263 2.0845 -2.6667 38 1 10.8239 0.7038 -0.0041 39 1 11.8173 2.0044 -0.7184 40 1 12.9927 1.2986 2.0188 41 1 9.1687 4.0217 -1.1218 42 1 8.0366 3.2819 0.0513 43 1 3.8146 0.6263 -1.0463 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016242902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:37 Heat of formation + Delta-G solvation = -39.163148 kcal Electronic energy + Delta-G solvation = -26113.424836 eV Core-core repulsion = 22351.266531 eV Total energy + Delta-G solvation = -3762.158305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75568 -40.95301 -39.41399 -38.63388 -35.94658 -35.45034 -33.74502 -32.16476 -31.88106 -30.95418 -29.52230 -28.88276 -26.56252 -25.09131 -23.93876 -22.23361 -21.85725 -21.61231 -21.23373 -19.53033 -18.80163 -18.08156 -17.55374 -17.36796 -16.93447 -16.70245 -16.49656 -16.11724 -15.71001 -15.64571 -15.25663 -15.08354 -14.68142 -14.53753 -14.19161 -13.86644 -13.76083 -13.61163 -13.39493 -13.05923 -12.92133 -12.87558 -12.80034 -12.66413 -12.33754 -12.13036 -12.02913 -11.83292 -11.62648 -11.54152 -11.04701 -10.94513 -10.73227 -10.22856 -9.93502 -9.26727 -8.87849 -7.86129 -5.20489 -0.22076 0.25739 1.45110 1.46141 1.48563 1.55160 1.83067 1.99287 2.22362 2.48364 2.83615 3.32259 3.58879 3.64703 3.78900 3.80511 3.94299 4.04308 4.09288 4.17725 4.28735 4.37666 4.48551 4.53056 4.65041 4.65505 4.69998 4.84316 4.86163 4.93875 5.01433 5.07990 5.21237 5.26675 5.33930 5.38422 5.42581 5.52452 5.66472 5.75305 5.91332 6.18803 6.41730 6.50575 7.11024 7.13897 7.14392 7.75091 8.39928 9.23801 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.003109 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.141613 B = 9002.597547 C = 9393.553020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.496 3.504 3 O -0.583 6.583 4 N -0.658 5.658 5 C 0.123 3.877 6 C -0.101 4.101 7 C -0.100 4.100 8 C -0.101 4.101 9 C -0.137 4.137 10 C 0.552 3.448 11 O -0.584 6.584 12 N -0.692 5.692 13 C 0.138 3.862 14 H 0.101 0.899 15 C -0.132 4.132 16 C 0.184 3.816 17 N -0.620 5.620 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.057 4.057 21 N -0.944 5.944 22 Si 0.975 3.025 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.122 3.878 27 C -0.090 4.090 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.435 0.565 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.136 0.864 35 H 0.408 0.592 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.024 0.976 39 H 0.012 0.988 40 H 0.249 0.751 41 H 0.033 0.967 42 H 0.021 0.979 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.479 -15.936 -3.907 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.286 3.714 3 O -0.462 6.462 4 N -0.306 5.306 5 C 0.028 3.972 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.140 4.140 10 C 0.341 3.659 11 O -0.466 6.466 12 N -0.342 5.342 13 C 0.032 3.968 14 H 0.119 0.881 15 C -0.171 4.171 16 C 0.060 3.940 17 N -0.347 5.347 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.250 4.250 21 N -0.593 5.593 22 Si 0.804 3.196 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.005 4.005 27 C -0.112 4.112 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.275 0.725 32 H 0.193 0.807 33 H 0.188 0.812 34 H 0.154 0.846 35 H 0.245 0.755 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.354 -14.582 -4.195 26.196 hybrid contribution 0.736 0.347 1.067 1.342 sum -20.617 -14.235 -3.128 25.249 Atomic orbital electron populations 1.21916 0.86237 1.06819 1.06747 1.22123 0.93022 0.82508 0.73711 1.90821 1.71889 1.33635 1.49881 1.43525 1.03769 1.10841 1.72443 1.17776 0.84102 0.96887 0.98389 1.21526 0.95163 0.98723 0.96734 1.21356 0.93482 0.98463 0.98547 1.21569 1.01009 0.93405 0.96089 1.19775 0.93789 0.97083 1.03401 1.18714 0.82427 0.85241 0.79522 1.90713 1.71708 1.39326 1.44813 1.45701 1.05429 1.28473 1.54641 1.22014 0.91936 0.87718 0.95124 0.88107 1.23096 0.92741 1.02937 0.98295 1.20977 0.92903 0.91666 0.88489 1.44698 1.28661 1.47214 1.14094 1.19326 1.08377 1.18780 0.90847 0.91271 1.25519 0.97699 0.99621 1.02202 1.70136 1.18476 1.32647 1.38019 0.85136 0.76771 0.77890 0.79852 1.21092 1.21611 1.20240 1.22048 0.89767 0.95688 0.92981 1.21219 0.92455 0.99083 0.98412 0.86565 0.89064 0.86189 0.72458 0.80687 0.81227 0.84628 0.75473 0.88563 0.88888 0.95803 0.96950 0.94183 0.94894 0.96031 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.31 71.23 0.73 -0.49 16 2 C 0.50 9.82 7.78 87.66 0.68 10.50 16 3 O -0.58 -19.72 14.54 -3.07 -0.04 -19.77 16 4 N -0.66 -9.74 5.34 -303.60 -1.62 -11.36 16 5 C 0.12 2.69 6.29 38.11 0.24 2.93 16 6 C -0.10 -1.54 9.96 22.44 0.22 -1.31 16 7 C -0.10 -1.73 10.02 22.21 0.22 -1.50 16 8 C -0.10 -2.51 9.54 22.54 0.21 -2.30 16 9 C -0.14 -4.45 5.87 -20.10 -0.12 -4.56 16 10 C 0.55 21.44 7.77 86.79 0.67 22.11 16 11 O -0.58 -26.95 15.99 -3.87 -0.06 -27.01 16 12 N -0.69 -25.08 5.14 -438.81 -2.25 -27.33 16 13 C 0.14 5.23 3.43 46.38 0.16 5.39 16 14 H 0.10 3.70 7.54 -2.39 -0.02 3.69 16 15 C -0.13 -4.66 6.55 31.78 0.21 -4.46 16 16 C 0.18 8.81 5.36 86.73 0.47 9.28 16 17 N -0.62 -32.64 3.39 -691.99 -2.35 -34.99 16 18 C -0.24 -14.17 10.28 84.03 0.86 -13.30 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 21 N -0.94 -55.62 10.31 21.65 0.22 -55.40 16 22 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 C 0.12 5.59 6.93 86.86 0.60 6.19 16 27 C -0.09 -2.90 8.24 22.66 0.19 -2.71 16 28 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.43 1.90 8.82 -92.71 -0.82 1.08 16 32 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.14 3.15 6.40 -2.91 -0.02 3.13 16 35 H 0.41 13.61 6.70 -92.71 -0.62 12.99 16 36 H 0.10 2.85 8.14 -2.39 -0.02 2.84 16 37 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 39 H 0.01 0.66 7.51 -2.38 -0.02 0.64 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.12 4.52 5.81 -2.91 -0.02 4.51 16 Total: -1.00 -86.38 358.80 1.36 -85.02 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.38 Total: 19.40 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.82 Total: 22.98 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -6.00 Total: -129.08 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.11 Total: -46.78 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -86.38 1.36 -85.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016242902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.858 kcal (2) G-P(sol) polarization free energy of solvation -86.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds