Wall clock time and date at job start Tue Mar 31 2020 11:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99473 * 2 1 4 4 O 1.21551 * 120.00670 * 359.97438 * 3 2 1 5 5 C 1.47865 * 119.99789 * 180.02562 * 3 2 1 6 6 C 1.39712 * 120.07063 * 359.97438 * 5 3 2 7 7 C 1.38062 * 120.14034 * 180.02562 * 6 5 3 8 8 C 1.38097 * 120.29726 * 359.97438 * 7 6 5 9 9 C 1.39664 * 120.14712 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.07411 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99935 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00120 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00101 * 179.97438 * 12 10 9 14 14 H 1.08995 * 110.77828 * 323.21094 * 13 12 10 15 15 C 1.55159 * 110.72111 * 199.97366 * 13 12 10 16 16 C 1.55122 * 101.48670 * 205.96753 * 15 13 12 17 17 N 1.47423 * 104.72063 * 37.29860 * 16 15 13 18 18 C 1.36945 * 125.64659 * 155.81925 * 17 16 15 19 19 H 1.07996 * 119.99955 * 199.18383 * 18 17 16 20 20 C 1.38807 * 119.99963 * 19.18181 * 18 17 16 21 21 N 1.31622 * 120.00467 * 28.44676 * 20 18 17 22 22 Si 1.86809 * 119.99818 * 208.72664 * 20 18 17 23 23 H 1.48502 * 109.46859 * 179.72641 * 22 20 18 24 24 H 1.48500 * 109.46672 * 299.72508 * 22 20 18 25 25 H 1.48494 * 109.47163 * 59.72061 * 22 20 18 26 26 C 1.47015 * 108.70205 * 335.54859 * 17 16 15 27 27 C 1.39297 * 120.07363 * 180.25632 * 5 3 2 28 28 H 1.08998 * 109.47292 * 60.00208 * 1 2 3 29 29 H 1.09001 * 109.46460 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47294 * 300.00279 * 1 2 3 31 31 H 0.96996 * 120.00339 * 179.97438 * 2 1 3 32 32 H 1.07996 * 119.93002 * 0.02562 * 6 5 3 33 33 H 1.08002 * 119.84452 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.92313 * 180.02562 * 8 7 6 35 35 H 0.97006 * 119.99851 * 0.02562 * 12 10 9 36 36 H 1.09008 * 111.00409 * 324.21144 * 15 13 12 37 37 H 1.09009 * 111.00336 * 88.02001 * 15 13 12 38 38 H 1.08995 * 110.50275 * 278.45104 * 16 15 13 39 39 H 1.09007 * 110.34131 * 156.06011 * 16 15 13 40 40 H 0.97002 * 119.99472 * 5.94034 * 21 20 18 41 41 H 1.09005 * 109.88112 * 120.71015 * 26 17 16 42 42 H 1.09002 * 109.88578 * 241.87084 * 26 17 16 43 43 H 1.07992 * 120.15002 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2200 -0.0005 5 6 3.6175 1.1674 -0.0006 6 6 4.3176 -0.0417 -0.0006 7 6 5.6982 -0.0433 -0.0006 8 6 6.3962 1.1483 -0.0011 9 6 5.7087 2.3640 -0.0022 10 6 6.4578 3.6388 -0.0033 11 8 5.8580 4.6960 -0.0038 12 7 7.8055 3.6285 -0.0038 13 6 8.5476 4.8916 -0.0055 14 1 8.0396 5.6377 -0.6165 15 6 10.0015 4.6734 -0.5016 16 6 10.7430 5.8481 0.1889 17 7 10.1060 5.9665 1.5131 18 6 10.6819 6.5110 2.6299 19 1 10.2831 6.2851 3.6078 20 6 11.7781 7.3533 2.5050 21 7 11.9355 8.0712 1.4131 22 14 13.0341 7.4621 3.8835 23 1 14.1037 8.4199 3.5041 24 1 12.3673 7.9310 5.1248 25 1 13.6296 6.1221 4.1175 26 6 8.7478 5.4092 1.4344 27 6 4.3154 2.3728 0.0048 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 3.7777 -0.9770 -0.0006 33 1 6.2346 -0.9807 -0.0002 34 1 7.4762 1.1400 -0.0015 35 1 8.2841 2.7847 -0.0038 36 1 10.3886 3.7113 -0.1660 37 1 10.0611 4.7592 -1.5867 38 1 10.6117 6.7690 -0.3791 39 1 11.8026 5.6160 0.2970 40 1 11.2436 8.0780 0.7333 41 1 8.6431 4.5867 2.1419 42 1 8.0151 6.1857 1.6544 43 1 3.7791 3.3101 0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016302903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:31 Heat of formation + Delta-G solvation = -16.186217 kcal Electronic energy + Delta-G solvation = -25410.494374 eV Core-core repulsion = 21649.332424 eV Total energy + Delta-G solvation = -3761.161951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.76374 -39.80633 -38.32651 -37.28270 -35.11028 -34.31978 -32.47336 -31.51492 -31.39307 -29.13885 -27.64661 -27.05703 -24.68779 -24.10851 -23.22566 -21.54235 -20.65092 -20.54549 -19.86635 -18.85950 -17.51693 -16.89762 -16.60146 -16.49365 -16.01840 -15.63755 -15.13839 -14.79173 -14.63413 -14.31300 -14.13088 -14.04961 -13.73581 -13.48912 -13.20829 -12.98555 -12.80438 -12.68867 -12.41589 -12.27381 -11.76007 -11.71174 -11.22988 -10.82631 -10.70210 -10.53701 -10.41315 -10.16294 -10.01332 -9.88943 -9.67231 -9.54672 -9.43530 -9.39439 -8.89921 -8.37439 -6.92466 -6.09336 -3.15366 0.25959 0.72210 2.27099 2.69214 2.95162 3.15701 3.51497 3.54328 3.61785 3.72876 4.17170 4.28192 4.39810 4.59979 4.66218 4.70313 4.79770 4.97832 5.06539 5.07198 5.19424 5.24336 5.36807 5.39735 5.48516 5.58688 5.66253 5.79693 5.82771 5.88360 5.90904 5.96648 6.09915 6.24682 6.32428 6.38657 6.69255 6.85448 6.90147 6.98747 6.99970 7.55380 7.77976 7.82466 8.24075 8.50137 9.02729 9.81866 10.37006 11.22573 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.002270 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.817777 B =12331.610318 C =12477.830375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.527 6.527 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.132 4.132 8 C -0.060 4.060 9 C -0.133 4.133 10 C 0.554 3.446 11 O -0.528 6.528 12 N -0.710 5.710 13 C 0.132 3.868 14 H 0.095 0.905 15 C -0.140 4.140 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.337 4.337 19 H 0.064 0.936 20 C -0.026 4.026 21 N -0.914 5.914 22 Si 1.066 2.934 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.127 3.873 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.401 0.599 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.031 0.969 39 H 0.054 0.946 40 H 0.268 0.732 41 H 0.027 0.973 42 H 0.030 0.970 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 -24.208 -6.310 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.404 6.404 5 C -0.149 4.149 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.079 4.079 9 C -0.136 4.136 10 C 0.340 3.660 11 O -0.405 6.405 12 N -0.362 5.362 13 C 0.028 3.972 14 H 0.113 0.887 15 C -0.179 4.179 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.465 4.465 19 H 0.081 0.919 20 C -0.228 4.228 21 N -0.554 5.554 22 Si 0.895 3.105 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.000 4.000 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.394 -21.936 -5.769 27.412 hybrid contribution -1.094 -1.603 -0.344 1.971 sum -16.488 -23.538 -6.113 29.382 Atomic orbital electron populations 1.21575 0.78987 1.02379 1.02708 1.45684 1.08004 1.08479 1.76436 1.18257 0.87114 0.83833 0.76211 1.90824 1.69772 1.31058 1.48731 1.19833 0.92866 0.94231 1.08005 1.21438 0.94740 0.96775 0.95599 1.21049 0.93824 0.98414 1.01708 1.21596 1.00432 0.91660 0.94202 1.20039 0.94045 0.93594 1.05913 1.18166 0.82405 0.88532 0.76909 1.90821 1.68576 1.31993 1.49094 1.45950 1.05678 1.09927 1.74604 1.22102 0.91689 0.84902 0.98529 0.88729 1.23151 0.94109 1.00824 0.99860 1.21556 0.96480 0.93480 0.86541 1.44532 1.09114 1.71251 1.07970 1.19722 1.15147 1.26691 0.84897 0.91852 1.25804 1.00732 0.93167 1.03060 1.70787 1.38564 1.34979 1.11096 0.83514 0.76489 0.75910 0.74567 1.21070 1.21976 1.22121 1.21663 0.88821 0.96596 0.92914 1.21419 0.92500 0.98601 0.89559 0.91953 0.90462 0.91941 0.76429 0.85287 0.84506 0.84840 0.76766 0.91193 0.91150 0.95175 0.92726 0.92036 0.95458 0.95234 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.11 16 2 N -0.73 -4.80 5.66 -68.04 -0.39 -5.18 16 3 C 0.56 6.02 7.77 -12.32 -0.10 5.92 16 4 O -0.53 -7.97 16.34 5.32 0.09 -7.88 16 5 C -0.15 -1.46 5.87 -105.01 -0.62 -2.07 16 6 C -0.07 -0.43 9.54 -39.10 -0.37 -0.80 16 7 C -0.13 -0.82 10.02 -39.70 -0.40 -1.22 16 8 C -0.06 -0.50 9.54 -39.10 -0.37 -0.87 16 9 C -0.13 -1.60 5.87 -105.02 -0.62 -2.22 16 10 C 0.55 8.58 7.77 -12.32 -0.10 8.49 16 11 O -0.53 -10.46 16.07 5.32 0.09 -10.37 16 12 N -0.71 -10.09 5.08 -52.97 -0.27 -10.36 16 13 C 0.13 2.36 3.23 -66.10 -0.21 2.15 16 14 H 0.09 1.81 7.70 -51.93 -0.40 1.41 16 15 C -0.14 -2.37 6.71 -24.47 -0.16 -2.53 16 16 C 0.15 3.32 5.38 -2.41 -0.01 3.31 16 17 N -0.60 -15.57 3.26 -169.95 -0.55 -16.13 16 18 C -0.34 -9.73 10.00 -15.06 -0.15 -9.88 16 19 H 0.06 1.84 7.97 -52.49 -0.42 1.42 16 20 C -0.03 -0.74 5.09 -17.43 -0.09 -0.83 16 21 N -0.91 -27.87 13.00 55.49 0.72 -27.15 16 22 Si 1.07 25.57 30.01 -169.99 -5.10 20.47 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.13 2.83 6.99 -3.07 -0.02 2.81 16 27 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 1.27 6.85 -40.82 -0.28 0.99 16 32 H 0.13 0.35 6.39 -52.49 -0.34 0.01 16 33 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.82 6.39 -52.49 -0.34 0.48 16 35 H 0.40 4.26 6.54 -40.82 -0.27 4.00 16 36 H 0.07 1.06 8.00 -51.92 -0.42 0.65 16 37 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 38 H 0.03 0.74 6.81 -51.93 -0.35 0.39 16 39 H 0.05 1.33 8.07 -51.93 -0.42 0.92 16 40 H 0.27 8.23 6.19 -40.82 -0.25 7.98 16 41 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.15 2.24 7.23 -52.49 -0.38 1.86 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -37.95 359.31 -8.54 -46.49 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.61 Total: 1.70 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.93 Total: 2.99 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.49 Total: -58.82 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.10 Total: 20.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.95 -8.54 -46.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016302903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.307 kcal (2) G-P(sol) polarization free energy of solvation -37.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds