Wall clock time and date at job start Tue Mar 31 2020 11:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99473 * 2 1 4 4 O 1.21551 * 120.00670 * 359.97438 * 3 2 1 5 5 C 1.47865 * 119.99789 * 180.02562 * 3 2 1 6 6 C 1.39712 * 120.07063 * 359.97438 * 5 3 2 7 7 C 1.38062 * 120.14034 * 180.02562 * 6 5 3 8 8 C 1.38097 * 120.29726 * 359.97438 * 7 6 5 9 9 C 1.39664 * 120.14712 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.07411 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99935 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00120 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00101 * 179.97438 * 12 10 9 14 14 H 1.08995 * 110.77828 * 323.21094 * 13 12 10 15 15 C 1.55159 * 110.72111 * 199.97366 * 13 12 10 16 16 C 1.55122 * 101.48670 * 205.96753 * 15 13 12 17 17 N 1.47423 * 104.72063 * 37.29860 * 16 15 13 18 18 C 1.36945 * 125.64659 * 155.81925 * 17 16 15 19 19 H 1.07996 * 119.99955 * 199.18383 * 18 17 16 20 20 C 1.38807 * 119.99963 * 19.18181 * 18 17 16 21 21 N 1.31622 * 120.00467 * 28.44676 * 20 18 17 22 22 Si 1.86809 * 119.99818 * 208.72664 * 20 18 17 23 23 H 1.48502 * 109.46859 * 179.72641 * 22 20 18 24 24 H 1.48500 * 109.46672 * 299.72508 * 22 20 18 25 25 H 1.48494 * 109.47163 * 59.72061 * 22 20 18 26 26 C 1.47015 * 108.70205 * 335.54859 * 17 16 15 27 27 C 1.39297 * 120.07363 * 180.25632 * 5 3 2 28 28 H 1.08998 * 109.47292 * 60.00208 * 1 2 3 29 29 H 1.09001 * 109.46460 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47294 * 300.00279 * 1 2 3 31 31 H 0.96996 * 120.00339 * 179.97438 * 2 1 3 32 32 H 1.07996 * 119.93002 * 0.02562 * 6 5 3 33 33 H 1.08002 * 119.84452 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.92313 * 180.02562 * 8 7 6 35 35 H 0.97006 * 119.99851 * 0.02562 * 12 10 9 36 36 H 1.09008 * 111.00409 * 324.21144 * 15 13 12 37 37 H 1.09009 * 111.00336 * 88.02001 * 15 13 12 38 38 H 1.08995 * 110.50275 * 278.45104 * 16 15 13 39 39 H 1.09007 * 110.34131 * 156.06011 * 16 15 13 40 40 H 0.97002 * 119.99472 * 5.94034 * 21 20 18 41 41 H 1.09005 * 109.88112 * 120.71015 * 26 17 16 42 42 H 1.09002 * 109.88578 * 241.87084 * 26 17 16 43 43 H 1.07992 * 120.15002 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2200 -0.0005 5 6 3.6175 1.1674 -0.0006 6 6 4.3176 -0.0417 -0.0006 7 6 5.6982 -0.0433 -0.0006 8 6 6.3962 1.1483 -0.0011 9 6 5.7087 2.3640 -0.0022 10 6 6.4578 3.6388 -0.0033 11 8 5.8580 4.6960 -0.0038 12 7 7.8055 3.6285 -0.0038 13 6 8.5476 4.8916 -0.0055 14 1 8.0396 5.6377 -0.6165 15 6 10.0015 4.6734 -0.5016 16 6 10.7430 5.8481 0.1889 17 7 10.1060 5.9665 1.5131 18 6 10.6819 6.5110 2.6299 19 1 10.2831 6.2851 3.6078 20 6 11.7781 7.3533 2.5050 21 7 11.9355 8.0712 1.4131 22 14 13.0341 7.4621 3.8835 23 1 14.1037 8.4199 3.5041 24 1 12.3673 7.9310 5.1248 25 1 13.6296 6.1221 4.1175 26 6 8.7478 5.4092 1.4344 27 6 4.3154 2.3728 0.0048 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 3.7777 -0.9770 -0.0006 33 1 6.2346 -0.9807 -0.0002 34 1 7.4762 1.1400 -0.0015 35 1 8.2841 2.7847 -0.0038 36 1 10.3886 3.7113 -0.1660 37 1 10.0611 4.7592 -1.5867 38 1 10.6117 6.7690 -0.3791 39 1 11.8026 5.6160 0.2970 40 1 11.2436 8.0780 0.7333 41 1 8.6431 4.5867 2.1419 42 1 8.0151 6.1857 1.6544 43 1 3.7791 3.3101 0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016302903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:30 Heat of formation + Delta-G solvation = -45.723817 kcal Electronic energy + Delta-G solvation = -25411.775221 eV Core-core repulsion = 21649.332424 eV Total energy + Delta-G solvation = -3762.442797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67867 -40.89497 -39.46439 -38.69433 -35.94177 -35.83891 -34.09589 -32.56986 -32.16211 -30.95166 -29.08575 -27.90426 -26.44441 -25.15421 -24.13127 -22.54166 -22.21624 -21.87111 -21.17495 -19.83516 -19.50898 -17.87768 -17.71815 -17.27498 -16.93967 -16.53968 -16.36698 -16.20735 -15.84849 -15.68736 -15.40345 -15.16074 -15.04165 -14.82547 -14.49299 -14.16295 -14.06426 -13.62978 -13.38884 -13.21938 -12.94376 -12.75162 -12.64960 -12.57389 -12.48296 -12.46584 -11.90198 -11.79807 -11.62469 -11.31935 -11.13317 -10.60515 -10.43075 -10.32335 -10.07376 -10.01323 -9.08374 -8.37860 -5.41926 -0.44624 -0.07128 1.46596 1.57091 1.64911 1.84086 1.86349 1.96249 2.16108 2.62784 2.79826 3.13438 3.38204 3.54919 3.57906 3.63217 3.79008 3.85274 3.98744 4.03985 4.08772 4.29274 4.34998 4.40267 4.49238 4.59145 4.59500 4.76255 4.84318 4.85192 4.88384 4.93871 4.99230 5.12596 5.16525 5.20239 5.21957 5.30500 5.37588 5.63108 5.69654 6.26133 6.41313 6.43541 6.83241 7.07927 7.10994 7.64142 8.21207 8.92229 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.002270 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.817777 B =12331.610318 C =12477.830375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.551 3.449 4 O -0.587 6.587 5 C -0.158 4.158 6 C -0.042 4.042 7 C -0.116 4.116 8 C -0.050 4.050 9 C -0.154 4.154 10 C 0.551 3.449 11 O -0.586 6.586 12 N -0.692 5.692 13 C 0.149 3.851 14 H 0.077 0.923 15 C -0.114 4.114 16 C 0.143 3.857 17 N -0.621 5.621 18 C -0.354 4.354 19 H 0.054 0.946 20 C -0.076 4.076 21 N -0.938 5.938 22 Si 1.121 2.879 23 H -0.289 1.289 24 H -0.278 1.278 25 H -0.274 1.274 26 C 0.126 3.874 27 C -0.029 4.029 28 H 0.049 0.951 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.421 0.579 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.162 0.838 35 H 0.419 0.581 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.006 0.994 39 H 0.036 0.964 40 H 0.253 0.747 41 H 0.033 0.967 42 H -0.007 1.007 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -29.818 -6.468 34.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.339 3.661 4 O -0.469 6.469 5 C -0.161 4.161 6 C -0.060 4.060 7 C -0.134 4.134 8 C -0.068 4.068 9 C -0.157 4.157 10 C 0.340 3.660 11 O -0.466 6.466 12 N -0.345 5.345 13 C 0.043 3.957 14 H 0.095 0.905 15 C -0.152 4.152 16 C 0.017 3.983 17 N -0.349 5.349 18 C -0.482 4.482 19 H 0.072 0.928 20 C -0.272 4.272 21 N -0.580 5.580 22 Si 0.944 3.056 23 H -0.215 1.215 24 H -0.204 1.204 25 H -0.200 1.200 26 C -0.001 4.001 27 C -0.049 4.049 28 H 0.068 0.932 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.260 0.740 32 H 0.195 0.805 33 H 0.203 0.797 34 H 0.180 0.820 35 H 0.258 0.742 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.024 0.976 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.011 0.989 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.466 -27.672 -5.941 31.785 hybrid contribution -1.512 0.053 -0.284 1.539 sum -15.978 -27.618 -6.224 32.509 Atomic orbital electron populations 1.21749 0.78142 1.04796 1.01487 1.45563 1.08596 1.08013 1.74189 1.18571 0.87705 0.84145 0.75709 1.90796 1.70884 1.33386 1.51800 1.19835 0.92475 0.94713 1.09071 1.21968 0.95304 0.96755 0.92018 1.21611 0.93644 0.99229 0.98884 1.21947 1.01861 0.90651 0.92386 1.19719 0.93374 0.93251 1.09355 1.18821 0.82554 0.89316 0.75328 1.90794 1.69686 1.34484 1.51672 1.45633 1.05264 1.09480 1.74079 1.21644 0.92872 0.86213 0.95015 0.90534 1.23023 0.91481 0.99403 1.01286 1.21555 0.96121 0.95086 0.85509 1.44823 1.10719 1.70949 1.08404 1.19987 1.15670 1.26780 0.85759 0.92798 1.27338 1.02609 0.92570 1.04701 1.70913 1.38362 1.36812 1.11882 0.82800 0.73977 0.76693 0.72132 1.21463 1.20408 1.19958 1.21724 0.86474 0.95563 0.96299 1.21201 0.93148 0.98362 0.92239 0.93185 0.86099 0.93326 0.74015 0.80515 0.79679 0.82050 0.74152 0.88141 0.87686 0.97640 0.94559 0.93648 0.94894 0.98920 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.70 127.77 1.37 2.12 16 2 N -0.71 -7.68 5.66 -487.45 -2.76 -10.44 16 3 C 0.55 11.88 7.77 86.79 0.67 12.55 16 4 O -0.59 -19.27 16.34 -3.88 -0.06 -19.34 16 5 C -0.16 -2.98 5.87 -20.12 -0.12 -3.10 16 6 C -0.04 -0.33 9.54 22.58 0.22 -0.12 16 7 C -0.12 -0.74 10.02 22.19 0.22 -0.52 16 8 C -0.05 -0.63 9.54 22.58 0.22 -0.41 16 9 C -0.15 -3.65 5.87 -20.12 -0.12 -3.77 16 10 C 0.55 17.59 7.77 86.79 0.67 18.26 16 11 O -0.59 -25.23 16.07 -3.88 -0.06 -25.29 16 12 N -0.69 -18.89 5.08 -439.78 -2.23 -21.12 16 13 C 0.15 5.32 3.23 46.18 0.15 5.47 16 14 H 0.08 3.06 7.70 -2.39 -0.02 3.04 16 15 C -0.11 -3.60 6.71 32.06 0.21 -3.39 16 16 C 0.14 6.64 5.38 86.93 0.47 7.11 16 17 N -0.62 -33.19 3.26 -691.59 -2.26 -35.45 16 18 C -0.35 -20.99 10.00 84.03 0.84 -20.15 16 19 H 0.05 3.22 7.97 -2.91 -0.02 3.20 16 20 C -0.08 -4.47 5.09 84.86 0.43 -4.04 16 21 N -0.94 -58.92 13.00 21.65 0.28 -58.64 16 22 Si 1.12 51.88 30.01 68.60 2.06 53.94 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.13 5.84 6.99 86.73 0.61 6.44 16 27 C -0.03 -0.78 9.14 22.79 0.21 -0.58 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.42 0.77 6.85 -92.71 -0.64 0.13 16 32 H 0.18 -0.32 6.39 -2.91 -0.02 -0.34 16 33 H 0.19 -0.40 8.06 -2.91 -0.02 -0.43 16 34 H 0.16 1.08 6.39 -2.91 -0.02 1.06 16 35 H 0.42 7.55 6.54 -92.70 -0.61 6.95 16 36 H 0.10 2.64 8.00 -2.38 -0.02 2.62 16 37 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 38 H 0.01 0.30 6.81 -2.39 -0.02 0.28 16 39 H 0.04 1.80 8.07 -2.38 -0.02 1.78 16 40 H 0.25 16.30 6.19 -92.71 -0.57 15.72 16 41 H 0.03 1.48 8.03 -2.38 -0.02 1.46 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.11 3.72 7.23 -2.91 -0.02 3.70 16 Total: -1.00 -93.99 359.31 1.02 -92.97 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.01 Total: 7.49 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.05 Total: 15.88 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -6.97 Total: -125.65 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.13 Total: -44.63 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.06 Total: 53.94 kcal Total: -93.99 1.02 -92.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016302903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.243 kcal (2) G-P(sol) polarization free energy of solvation -93.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds