Wall clock time and date at job start Tue Mar 31 2020 11:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21557 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.47856 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.39715 * 120.07178 * 359.97438 * 5 3 2 7 7 C 1.38057 * 120.14353 * 179.97438 * 6 5 3 8 8 C 1.38100 * 120.29751 * 0.02562 * 7 6 5 9 9 C 1.39669 * 120.14379 * 0.02562 * 8 7 6 10 10 C 1.47856 * 120.06974 * 179.97438 * 9 8 7 11 11 O 1.21553 * 119.99880 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00225 * 0.02562 * 10 9 8 13 13 C 1.46496 * 119.99996 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.89114 * 31.11784 * 13 12 10 15 15 C 1.55162 * 111.00705 * 154.99839 * 13 12 10 16 16 C 1.54324 * 102.94173 * 153.57245 * 15 13 12 17 17 N 1.47014 * 107.27409 * 337.80784 * 16 15 13 18 18 C 1.36943 * 125.64959 * 178.98269 * 17 16 15 19 19 H 1.07997 * 120.00053 * 179.97438 * 18 17 16 20 20 C 1.38818 * 119.99757 * 359.97438 * 18 17 16 21 21 N 1.31614 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47021 * 89.99701 * 22 20 18 24 24 H 1.48501 * 109.46904 * 209.99601 * 22 20 18 25 25 H 1.48503 * 109.47058 * 329.99619 * 22 20 18 26 26 C 1.47424 * 108.70622 * 358.94098 * 17 16 15 27 27 C 1.39290 * 120.07549 * 179.72759 * 5 3 2 28 28 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 29 29 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 32 32 H 1.07997 * 119.92359 * 0.02562 * 6 5 3 33 33 H 1.07995 * 119.84627 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.92385 * 179.97438 * 8 7 6 35 35 H 0.96999 * 119.99975 * 359.97438 * 12 10 9 36 36 H 1.08999 * 110.72013 * 271.94067 * 15 13 12 37 37 H 1.09005 * 110.71787 * 35.21304 * 15 13 12 38 38 H 1.08997 * 109.87988 * 97.22846 * 16 15 13 39 39 H 1.08997 * 109.88056 * 218.38593 * 16 15 13 40 40 H 0.97002 * 119.99844 * 180.02562 * 21 20 18 41 41 H 1.09003 * 110.36473 * 265.29330 * 26 17 16 42 42 H 1.09001 * 110.37104 * 142.96518 * 26 17 16 43 43 H 1.08004 * 120.14828 * 359.97159 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 -0.0006 6 6 4.3176 -0.0418 -0.0006 7 6 5.6982 -0.0434 -0.0016 8 6 6.3963 1.1481 -0.0022 9 6 5.7088 2.3639 -0.0011 10 6 6.4579 3.6386 -0.0011 11 8 5.8582 4.6959 0.0003 12 7 7.8056 3.6283 -0.0027 13 6 8.5477 4.8914 -0.0033 14 1 7.9936 5.6680 0.5238 15 6 9.9621 4.7058 0.6073 16 6 10.7798 5.8270 -0.0678 17 7 10.0807 6.1904 -1.3090 18 6 10.4727 7.1623 -2.1906 19 1 9.8882 7.3536 -3.0783 20 6 11.6213 7.9015 -1.9431 21 7 12.3333 7.6686 -0.8610 22 14 12.1563 9.2267 -3.1460 23 1 11.5393 10.5218 -2.7623 24 1 13.6355 9.3548 -3.1155 25 1 11.7196 8.8569 -4.5163 26 6 8.8884 5.3346 -1.4481 27 6 4.3154 2.3727 -0.0063 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 0.0041 32 1 3.7776 -0.9770 -0.0006 33 1 6.2345 -0.9808 -0.0021 34 1 7.4763 1.1398 -0.0026 35 1 8.2841 2.7846 -0.0034 36 1 9.9367 4.8441 1.6881 37 1 10.3667 3.7263 0.3521 38 1 10.8374 6.6925 0.5922 39 1 11.7823 5.4670 -0.2987 40 1 13.1358 8.1853 -0.6878 41 1 9.1145 4.4668 -2.0677 42 1 8.0618 5.9021 -1.8756 43 1 3.7790 3.3101 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016302904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:34 Heat of formation + Delta-G solvation = -12.044268 kcal Electronic energy + Delta-G solvation = -25346.199159 eV Core-core repulsion = 21585.216817 eV Total energy + Delta-G solvation = -3760.982342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72499 -39.73890 -38.24404 -37.11398 -35.08980 -34.16058 -32.35171 -31.46913 -31.34742 -29.15450 -27.56080 -26.98130 -24.79961 -24.12948 -23.17313 -21.49846 -20.49840 -20.40269 -19.90733 -18.82139 -17.08407 -16.79533 -16.54172 -16.35627 -15.85831 -15.61685 -14.98771 -14.72096 -14.60461 -14.52955 -14.09731 -14.07289 -13.74869 -13.47871 -12.87748 -12.78391 -12.66150 -12.47246 -12.31665 -12.18451 -11.80239 -11.68323 -11.02789 -10.90377 -10.75766 -10.40875 -10.36539 -10.09604 -9.91583 -9.81117 -9.67916 -9.65124 -9.39998 -9.36706 -8.77397 -8.58875 -6.83567 -5.70685 -3.04166 0.29129 0.75428 2.30240 2.71543 2.99340 3.22734 3.42731 3.47694 3.49413 3.65736 4.19863 4.31557 4.43050 4.52793 4.69232 4.73820 4.82485 5.01820 5.08611 5.17563 5.30759 5.38381 5.44628 5.51585 5.59728 5.72852 5.78510 5.82708 5.86767 5.91015 5.94354 6.17172 6.29070 6.37443 6.40441 6.56259 6.69752 6.95248 7.00728 7.53294 7.57669 7.63844 7.80053 7.82020 8.24625 8.31976 9.22635 9.82401 10.47074 11.41262 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.002264 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.461806 B =12364.569184 C =12880.082674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.558 3.442 4 O -0.527 6.527 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.132 4.132 8 C -0.060 4.060 9 C -0.132 4.132 10 C 0.553 3.447 11 O -0.529 6.529 12 N -0.710 5.710 13 C 0.126 3.874 14 H 0.099 0.901 15 C -0.149 4.149 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.129 3.871 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.401 0.599 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.020 0.980 42 H 0.044 0.956 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 -23.787 4.584 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.404 6.404 5 C -0.150 4.150 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.079 4.079 9 C -0.135 4.135 10 C 0.339 3.661 11 O -0.406 6.406 12 N -0.360 5.360 13 C 0.021 3.979 14 H 0.117 0.883 15 C -0.188 4.188 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.001 3.999 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.236 0.764 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.267 -22.076 4.557 28.395 hybrid contribution 0.855 -0.281 -0.609 1.086 sum -16.412 -22.357 3.948 28.014 Atomic orbital electron populations 1.21573 0.79011 1.02361 1.02700 1.45685 1.07989 1.08490 1.76455 1.18263 0.87135 0.83820 0.76196 1.90825 1.69776 1.31063 1.48737 1.19826 0.92833 0.94250 1.08052 1.21431 0.94746 0.96753 0.95692 1.21045 0.93814 0.98419 1.01742 1.21603 1.00457 0.91649 0.94197 1.20066 0.94038 0.93669 1.05756 1.18152 0.82470 0.88465 0.77001 1.90821 1.68584 1.31969 1.49208 1.45920 1.05643 1.10083 1.74384 1.22378 0.91902 0.84760 0.98827 0.88284 1.23194 0.94559 1.01069 1.00004 1.21151 0.93494 0.92928 0.87032 1.44390 1.24709 1.40024 1.23931 1.19078 1.06213 1.09202 1.00949 0.90356 1.24810 0.97731 0.99942 0.98054 1.69943 1.17860 1.42930 1.26408 0.86085 0.77559 0.81724 0.80204 1.21545 1.21691 1.20689 1.21829 0.90744 0.94079 0.93210 1.21422 0.92532 0.98577 0.89581 0.91971 0.91940 0.90481 0.76436 0.85337 0.84544 0.84801 0.76901 0.91511 0.92052 0.93183 0.93528 0.93739 0.96244 0.93792 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.11 16 2 N -0.73 -4.79 5.66 -68.04 -0.39 -5.18 16 3 C 0.56 6.01 7.77 -12.32 -0.10 5.92 16 4 O -0.53 -7.97 16.34 5.32 0.09 -7.88 16 5 C -0.15 -1.45 5.87 -105.02 -0.62 -2.07 16 6 C -0.07 -0.43 9.54 -39.10 -0.37 -0.80 16 7 C -0.13 -0.82 10.02 -39.70 -0.40 -1.22 16 8 C -0.06 -0.50 9.54 -39.10 -0.37 -0.87 16 9 C -0.13 -1.58 5.87 -105.02 -0.62 -2.20 16 10 C 0.55 8.56 7.77 -12.33 -0.10 8.47 16 11 O -0.53 -10.50 15.98 5.32 0.08 -10.41 16 12 N -0.71 -10.10 5.15 -52.66 -0.27 -10.37 16 13 C 0.13 2.29 3.42 -65.78 -0.23 2.07 16 14 H 0.10 2.01 7.54 -51.93 -0.39 1.62 16 15 C -0.15 -2.64 6.60 -24.89 -0.16 -2.80 16 16 C 0.18 4.28 5.37 -3.07 -0.02 4.27 16 17 N -0.60 -15.68 3.39 -170.07 -0.58 -16.26 16 18 C -0.23 -6.44 10.28 -15.05 -0.15 -6.59 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 22 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C 0.13 2.79 6.93 -2.52 -0.02 2.77 16 27 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.40 1.27 6.85 -40.82 -0.28 0.99 16 32 H 0.13 0.35 6.39 -52.49 -0.34 0.01 16 33 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 34 H 0.13 0.81 6.39 -52.49 -0.34 0.47 16 35 H 0.40 4.24 6.59 -40.82 -0.27 3.97 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 38 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 39 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.15 2.23 7.23 -52.48 -0.38 1.86 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -36.84 358.95 -8.74 -45.58 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.68 Total: 0.99 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.96 Total: 7.31 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.66 Total: -58.42 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.17 Total: -18.29 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.84 -8.74 -45.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016302904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.538 kcal (2) G-P(sol) polarization free energy of solvation -36.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds