Wall clock time and date at job start Tue Mar 31 2020 11:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21557 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.47856 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.39715 * 120.07178 * 359.97438 * 5 3 2 7 7 C 1.38057 * 120.14353 * 179.97438 * 6 5 3 8 8 C 1.38100 * 120.29751 * 0.02562 * 7 6 5 9 9 C 1.39669 * 120.14379 * 0.02562 * 8 7 6 10 10 C 1.47856 * 120.06974 * 179.97438 * 9 8 7 11 11 O 1.21553 * 119.99880 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00225 * 0.02562 * 10 9 8 13 13 C 1.46496 * 119.99996 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.89114 * 31.11784 * 13 12 10 15 15 C 1.55162 * 111.00705 * 154.99839 * 13 12 10 16 16 C 1.54324 * 102.94173 * 153.57245 * 15 13 12 17 17 N 1.47014 * 107.27409 * 337.80784 * 16 15 13 18 18 C 1.36943 * 125.64959 * 178.98269 * 17 16 15 19 19 H 1.07997 * 120.00053 * 179.97438 * 18 17 16 20 20 C 1.38818 * 119.99757 * 359.97438 * 18 17 16 21 21 N 1.31614 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47021 * 89.99701 * 22 20 18 24 24 H 1.48501 * 109.46904 * 209.99601 * 22 20 18 25 25 H 1.48503 * 109.47058 * 329.99619 * 22 20 18 26 26 C 1.47424 * 108.70622 * 358.94098 * 17 16 15 27 27 C 1.39290 * 120.07549 * 179.72759 * 5 3 2 28 28 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 29 29 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 32 32 H 1.07997 * 119.92359 * 0.02562 * 6 5 3 33 33 H 1.07995 * 119.84627 * 180.02562 * 7 6 5 34 34 H 1.07996 * 119.92385 * 179.97438 * 8 7 6 35 35 H 0.96999 * 119.99975 * 359.97438 * 12 10 9 36 36 H 1.08999 * 110.72013 * 271.94067 * 15 13 12 37 37 H 1.09005 * 110.71787 * 35.21304 * 15 13 12 38 38 H 1.08997 * 109.87988 * 97.22846 * 16 15 13 39 39 H 1.08997 * 109.88056 * 218.38593 * 16 15 13 40 40 H 0.97002 * 119.99844 * 180.02562 * 21 20 18 41 41 H 1.09003 * 110.36473 * 265.29330 * 26 17 16 42 42 H 1.09001 * 110.37104 * 142.96518 * 26 17 16 43 43 H 1.08004 * 120.14828 * 359.97159 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 -0.0006 6 6 4.3176 -0.0418 -0.0006 7 6 5.6982 -0.0434 -0.0016 8 6 6.3963 1.1481 -0.0022 9 6 5.7088 2.3639 -0.0011 10 6 6.4579 3.6386 -0.0011 11 8 5.8582 4.6959 0.0003 12 7 7.8056 3.6283 -0.0027 13 6 8.5477 4.8914 -0.0033 14 1 7.9936 5.6680 0.5238 15 6 9.9621 4.7058 0.6073 16 6 10.7798 5.8270 -0.0678 17 7 10.0807 6.1904 -1.3090 18 6 10.4727 7.1623 -2.1906 19 1 9.8882 7.3536 -3.0783 20 6 11.6213 7.9015 -1.9431 21 7 12.3333 7.6686 -0.8610 22 14 12.1563 9.2267 -3.1460 23 1 11.5393 10.5218 -2.7623 24 1 13.6355 9.3548 -3.1155 25 1 11.7196 8.8569 -4.5163 26 6 8.8884 5.3346 -1.4481 27 6 4.3154 2.3727 -0.0063 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 0.0041 32 1 3.7776 -0.9770 -0.0006 33 1 6.2345 -0.9808 -0.0021 34 1 7.4763 1.1398 -0.0026 35 1 8.2841 2.7846 -0.0034 36 1 9.9367 4.8441 1.6881 37 1 10.3667 3.7263 0.3521 38 1 10.8374 6.6925 0.5922 39 1 11.7823 5.4670 -0.2987 40 1 13.1358 8.1853 -0.6878 41 1 9.1145 4.4668 -2.0677 42 1 8.0618 5.9021 -1.8756 43 1 3.7790 3.3101 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016302904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:33 Heat of formation + Delta-G solvation = -40.511122 kcal Electronic energy + Delta-G solvation = -25347.433575 eV Core-core repulsion = 21585.216817 eV Total energy + Delta-G solvation = -3762.216758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61864 -40.82512 -39.32328 -38.58753 -35.81501 -35.74944 -33.96965 -32.54129 -32.12481 -30.96191 -28.95484 -27.89054 -26.57245 -25.10138 -24.07873 -22.42235 -22.03367 -21.87011 -21.18073 -19.75727 -18.92540 -17.83769 -17.51490 -17.21377 -16.89710 -16.67033 -16.38584 -16.19178 -15.85259 -15.73101 -15.34916 -14.93408 -14.78896 -14.47209 -14.18354 -14.13239 -13.96658 -13.74561 -13.39048 -13.19547 -12.97359 -12.90847 -12.78231 -12.50101 -12.41260 -12.13693 -12.04514 -11.83286 -11.59971 -11.27304 -11.06525 -10.73478 -10.39708 -10.27263 -10.02958 -9.97386 -8.93612 -7.88046 -5.24142 -0.40756 -0.03239 1.44359 1.47028 1.50874 1.55410 1.91876 2.00538 2.19426 2.48881 2.83745 3.30331 3.50663 3.60060 3.65848 3.82172 3.85617 4.02026 4.03238 4.09252 4.18825 4.33679 4.42599 4.57573 4.61105 4.62277 4.71005 4.84882 4.88727 4.95215 4.95795 5.02881 5.16533 5.20581 5.25668 5.32773 5.40470 5.46542 5.63517 5.72311 5.73764 6.17162 6.45641 6.49477 7.07773 7.13118 7.15494 7.72790 8.35966 9.21910 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.002264 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.461806 B =12364.569184 C =12880.082674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.551 3.449 4 O -0.588 6.588 5 C -0.158 4.158 6 C -0.043 4.043 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.153 4.153 10 C 0.551 3.449 11 O -0.586 6.586 12 N -0.691 5.691 13 C 0.144 3.856 14 H 0.072 0.928 15 C -0.126 4.126 16 C 0.183 3.817 17 N -0.626 5.626 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.980 3.020 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.270 1.270 26 C 0.127 3.873 27 C -0.029 4.029 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.120 0.880 31 H 0.421 0.579 32 H 0.177 0.823 33 H 0.185 0.815 34 H 0.163 0.837 35 H 0.418 0.582 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.012 0.988 39 H 0.021 0.979 40 H 0.249 0.751 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 -28.789 4.555 33.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.339 3.661 4 O -0.469 6.469 5 C -0.161 4.161 6 C -0.061 4.061 7 C -0.134 4.134 8 C -0.068 4.068 9 C -0.156 4.156 10 C 0.340 3.660 11 O -0.467 6.467 12 N -0.343 5.343 13 C 0.037 3.963 14 H 0.090 0.910 15 C -0.164 4.164 16 C 0.058 3.942 17 N -0.353 5.353 18 C -0.376 4.376 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.808 3.192 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.195 1.195 26 C 0.001 3.999 27 C -0.049 4.049 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.260 0.740 32 H 0.194 0.806 33 H 0.203 0.797 34 H 0.180 0.820 35 H 0.258 0.742 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.030 0.970 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.962 -27.201 4.529 32.374 hybrid contribution 0.669 1.155 -0.613 1.469 sum -16.293 -26.045 3.915 30.970 Atomic orbital electron populations 1.21747 0.78174 1.04769 1.01478 1.45565 1.08578 1.08033 1.74219 1.18579 0.87734 0.84126 0.75688 1.90797 1.70890 1.33386 1.51805 1.19825 0.92430 0.94739 1.09140 1.21956 0.95320 0.96728 0.92126 1.21605 0.93625 0.99248 0.98936 1.21955 1.01898 0.90624 0.92335 1.19733 0.93350 0.93304 1.09208 1.18793 0.82570 0.89251 0.75402 1.90793 1.69686 1.34471 1.51777 1.45582 1.05239 1.09564 1.73918 1.21849 0.92401 0.86006 0.96021 0.90956 1.23011 0.92467 1.00330 1.00623 1.20964 0.93524 0.93596 0.86126 1.44674 1.26179 1.40224 1.24208 1.19408 1.06477 1.10202 1.01556 0.90617 1.25652 0.97896 1.02162 0.99928 1.70150 1.17943 1.43687 1.27800 0.85059 0.76906 0.78713 0.78517 1.21503 1.21438 1.19522 1.21940 0.88628 0.93641 0.95716 1.21202 0.93180 0.98328 0.92237 0.93224 0.93303 0.86132 0.74029 0.80604 0.79736 0.81977 0.74234 0.89186 0.88360 0.96954 0.96078 0.94156 0.94538 0.96093 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.70 127.77 1.37 2.11 16 2 N -0.71 -7.64 5.66 -487.44 -2.76 -10.40 16 3 C 0.55 11.81 7.77 86.79 0.67 12.49 16 4 O -0.59 -19.20 16.34 -3.89 -0.06 -19.26 16 5 C -0.16 -2.97 5.87 -20.12 -0.12 -3.08 16 6 C -0.04 -0.33 9.54 22.58 0.22 -0.12 16 7 C -0.12 -0.72 10.02 22.19 0.22 -0.50 16 8 C -0.05 -0.61 9.54 22.58 0.22 -0.39 16 9 C -0.15 -3.58 5.87 -20.12 -0.12 -3.70 16 10 C 0.55 17.45 7.77 86.79 0.67 18.12 16 11 O -0.59 -25.14 15.98 -3.88 -0.06 -25.21 16 12 N -0.69 -18.77 5.15 -438.81 -2.26 -21.03 16 13 C 0.14 5.22 3.42 46.39 0.16 5.38 16 14 H 0.07 3.06 7.54 -2.39 -0.02 3.04 16 15 C -0.13 -4.25 6.60 31.78 0.21 -4.04 16 16 C 0.18 8.95 5.37 86.73 0.47 9.42 16 17 N -0.63 -33.45 3.39 -691.99 -2.35 -35.80 16 18 C -0.25 -14.51 10.28 84.03 0.86 -13.65 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 21 N -0.95 -57.36 10.31 21.65 0.22 -57.14 16 22 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 C 0.13 5.63 6.93 86.86 0.60 6.23 16 27 C -0.03 -0.78 9.14 22.79 0.21 -0.57 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.42 0.75 6.85 -92.71 -0.64 0.11 16 32 H 0.18 -0.33 6.39 -2.91 -0.02 -0.34 16 33 H 0.19 -0.42 8.06 -2.91 -0.02 -0.45 16 34 H 0.16 1.03 6.39 -2.91 -0.02 1.01 16 35 H 0.42 7.45 6.59 -92.71 -0.61 6.84 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.67 16 37 H 0.10 2.64 8.00 -2.38 -0.02 2.63 16 38 H 0.01 0.68 7.38 -2.39 -0.02 0.66 16 39 H 0.02 1.12 7.51 -2.39 -0.02 1.10 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 3.70 7.23 -2.91 -0.02 3.67 16 Total: -1.00 -90.85 358.95 0.67 -90.17 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -0.19 Total: 5.15 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 6.11 Total: 24.47 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -7.15 Total: -124.36 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.13 Total: -44.47 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -90.85 0.67 -90.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016302904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.660 kcal (2) G-P(sol) polarization free energy of solvation -90.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds