Wall clock time and date at job start Tue Mar 31 2020 11:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99756 * 2 1 4 4 N 1.34769 * 120.00210 * 179.97438 * 2 1 3 5 5 C 1.39441 * 120.00460 * 185.04615 * 4 2 1 6 6 C 1.39135 * 119.92441 * 33.73875 * 5 4 2 7 7 C 1.37671 * 120.07466 * 180.27502 * 6 5 4 8 8 C 1.39752 * 119.92188 * 359.46070 * 7 6 5 9 9 C 1.47595 * 120.07333 * 180.29227 * 8 7 6 10 10 O 1.21588 * 120.00064 * 340.02522 * 9 8 7 11 11 N 1.34772 * 120.00168 * 160.02771 * 9 8 7 12 12 C 1.47427 * 125.64929 * 354.21864 * 11 9 8 13 13 C 1.54905 * 104.83557 * 204.09244 * 12 11 9 14 14 C 1.55156 * 101.58045 * 322.99131 * 13 12 11 15 15 H 1.09004 * 110.71932 * 277.13453 * 14 13 12 16 16 N 1.46503 * 110.72452 * 154.04345 * 14 13 12 17 17 C 1.36934 * 120.00561 * 154.99660 * 16 14 13 18 18 H 1.08005 * 119.99903 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00015 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00376 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99925 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46962 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47400 * 119.99912 * 21 19 17 24 24 H 1.48502 * 109.47102 * 240.00199 * 21 19 17 25 25 C 1.47020 * 125.65084 * 173.91096 * 11 9 8 26 26 C 1.39752 * 119.85349 * 0.56575 * 8 7 6 27 27 C 1.37665 * 119.92504 * 359.70593 * 26 8 7 28 28 H 1.08999 * 109.47429 * 240.00873 * 1 2 3 29 29 H 1.09004 * 109.46812 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46894 * 120.00233 * 1 2 3 31 31 H 0.97003 * 120.00129 * 5.04316 * 4 2 1 32 32 H 1.07999 * 119.96084 * 0.02562 * 6 5 4 33 33 H 1.07993 * 120.03820 * 179.70536 * 7 6 5 34 34 H 1.09000 * 110.36593 * 322.92807 * 12 11 9 35 35 H 1.09001 * 110.36943 * 85.14316 * 12 11 9 36 36 H 1.09002 * 111.00535 * 81.06331 * 13 12 11 37 37 H 1.09001 * 111.01084 * 204.87513 * 13 12 11 38 38 H 0.97003 * 119.99429 * 334.99941 * 16 14 13 39 39 H 0.96997 * 120.00302 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88331 * 298.39470 * 25 11 9 41 41 H 1.08996 * 109.88695 * 59.56018 * 25 11 9 42 42 H 1.08007 * 120.03635 * 179.68864 * 26 8 7 43 43 H 1.08000 * 119.96447 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5712 -1.1695 0.1067 6 6 4.2106 -0.1980 0.8704 7 6 5.5835 -0.1940 0.9728 8 6 6.3343 -1.1740 0.3178 9 6 7.8059 -1.1767 0.4305 10 8 8.3918 -0.1657 0.7666 11 7 8.5003 -2.2998 0.1610 12 6 7.9165 -3.6201 -0.1380 13 6 9.0221 -4.6374 0.2393 14 6 10.3037 -3.8829 -0.2030 15 1 10.4804 -4.0157 -1.2704 16 7 11.4631 -4.3317 0.5721 17 6 12.7233 -4.2132 0.0499 18 1 12.8627 -3.7884 -0.9333 19 6 13.8217 -4.6389 0.7841 20 7 13.6519 -5.1570 1.9821 21 14 15.5411 -4.4766 0.0720 22 1 15.4613 -3.8680 -1.2803 23 1 16.3637 -3.6127 0.9563 24 1 16.1649 -5.8206 -0.0267 25 6 9.9655 -2.4099 0.1101 26 6 5.6889 -2.1480 -0.4490 27 6 4.3161 -2.1428 -0.5517 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8899 31 1 1.6987 -2.0056 -0.0729 32 1 3.6295 0.5562 1.3802 33 1 6.0795 0.5632 1.5619 34 1 7.0253 -3.7867 0.4671 35 1 7.6741 -3.6966 -1.1980 36 1 9.0303 -4.8252 1.3130 37 1 8.9039 -5.5673 -0.3169 38 1 11.3379 -4.7128 1.4553 39 1 14.4194 -5.4541 2.4953 40 1 10.3590 -1.7626 -0.6736 41 1 10.3920 -2.1304 1.0735 42 1 6.2665 -2.9037 -0.9605 43 1 3.8167 -2.8950 -1.1444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019695563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:07 Heat of formation + Delta-G solvation = -12.553102 kcal Electronic energy + Delta-G solvation = -25476.673274 eV Core-core repulsion = 21715.668867 eV Total energy + Delta-G solvation = -3761.004407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99330 -40.01960 -38.30635 -37.17719 -35.15888 -34.18437 -31.90919 -31.20826 -31.08284 -29.65797 -29.25176 -27.34727 -24.69012 -23.61985 -22.89509 -22.44764 -20.84188 -20.29424 -19.51333 -18.15629 -17.59369 -17.37369 -16.91458 -16.12810 -15.98705 -15.65515 -14.84653 -14.62231 -14.57167 -14.23820 -13.96035 -13.75991 -13.47695 -13.39346 -13.27248 -13.06372 -12.86222 -12.75125 -12.58809 -12.35741 -11.87695 -11.71324 -11.26601 -11.12424 -10.83032 -10.75371 -10.73106 -10.35976 -10.28082 -10.04394 -9.79609 -9.69824 -9.18850 -9.01271 -8.50805 -8.26377 -7.09321 -5.84220 -3.15116 0.64810 1.18369 2.06351 2.58206 2.94333 3.20437 3.41054 3.47278 3.49114 3.75475 4.18531 4.52400 4.53894 4.62622 4.65391 4.70196 4.78756 4.91130 5.11748 5.13179 5.21693 5.23026 5.28297 5.34411 5.45309 5.65134 5.70510 5.78976 5.88441 5.91542 5.97152 6.08737 6.15465 6.23410 6.29928 6.35103 6.51965 6.65989 6.73721 6.86920 6.88202 7.61070 7.65308 7.77422 8.32798 8.38518 9.45248 9.98521 10.33148 11.37832 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041075 B = 0.002216 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.513412 B =12629.530850 C =12996.156097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.675 5.675 5 C 0.162 3.838 6 C -0.131 4.131 7 C -0.042 4.042 8 C -0.139 4.139 9 C 0.566 3.434 10 O -0.541 6.541 11 N -0.607 5.607 12 C 0.096 3.904 13 C -0.143 4.143 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.712 5.712 17 C -0.248 4.248 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.081 3.919 26 C -0.081 4.081 27 C -0.155 4.155 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.413 0.587 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.409 2.606 -5.053 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.395 6.395 4 N -0.321 5.321 5 C 0.067 3.933 6 C -0.151 4.151 7 C -0.061 4.061 8 C -0.143 4.143 9 C 0.355 3.645 10 O -0.420 6.420 11 N -0.341 5.341 12 C -0.027 4.027 13 C -0.182 4.182 14 C 0.060 3.940 15 H 0.086 0.914 16 N -0.351 5.351 17 C -0.379 4.379 18 H 0.092 0.908 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.044 4.044 26 C -0.100 4.100 27 C -0.175 4.175 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.249 0.751 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.166 0.834 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -28.569 4.004 -4.940 29.269 hybrid contribution 0.632 -0.473 -0.093 0.795 sum -27.938 3.531 -5.033 28.606 Atomic orbital electron populations 1.21935 0.90499 1.06156 1.04652 1.21073 0.91003 0.83125 0.75169 1.90786 1.70581 1.31171 1.46920 1.43556 1.05319 1.10097 1.73079 1.17917 0.82668 0.96945 0.95746 1.21055 0.94453 0.99947 0.99664 1.21154 0.92736 0.96107 0.96140 1.19984 0.93233 0.98274 1.02767 1.17906 0.86438 0.82477 0.77632 1.90785 1.70957 1.32556 1.47656 1.48427 1.08588 1.08471 1.68570 1.22648 0.97464 0.82861 0.99726 1.23140 0.94874 0.97637 1.02565 1.21207 0.87202 0.89354 0.96277 0.91387 1.42377 1.01000 1.72711 1.19060 1.19316 0.83469 1.34862 1.00279 0.90834 1.24782 0.98124 1.01170 0.96513 1.69669 1.29712 1.46916 1.11394 0.86096 0.84557 0.77220 0.78161 1.20425 1.21751 1.21789 1.23275 0.77299 1.01391 1.02427 1.21833 0.94114 0.97367 0.96702 1.20808 0.93897 1.00967 1.01838 0.88891 0.88465 0.89019 0.75132 0.84449 0.84442 0.90477 0.91150 0.90428 0.89901 0.77855 0.93387 0.92247 0.90797 0.83404 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.32 36.00 0.37 -0.12 16 2 C 0.51 3.84 7.67 -10.99 -0.08 3.75 16 3 O -0.52 -6.48 14.77 5.56 0.08 -6.40 16 4 N -0.67 -4.25 5.32 -9.86 -0.05 -4.30 16 5 C 0.16 1.55 6.27 -83.73 -0.53 1.02 16 6 C -0.13 -1.54 8.63 -39.46 -0.34 -1.88 16 7 C -0.04 -0.56 9.58 -39.22 -0.38 -0.93 16 8 C -0.14 -1.92 5.74 -104.95 -0.60 -2.52 16 9 C 0.57 9.83 7.68 -12.44 -0.10 9.73 16 10 O -0.54 -11.50 16.85 5.29 0.09 -11.41 16 11 N -0.61 -9.87 3.33 -171.72 -0.57 -10.44 16 12 C 0.10 1.17 4.94 -2.53 -0.01 1.16 16 13 C -0.14 -2.07 6.71 -24.59 -0.17 -2.23 16 14 C 0.17 3.23 3.60 -66.09 -0.24 2.99 16 15 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 16 N -0.71 -17.18 5.16 -51.64 -0.27 -17.45 16 17 C -0.25 -6.71 9.96 -15.06 -0.15 -6.86 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.08 1.55 6.64 -3.06 -0.02 1.53 16 26 C -0.08 -0.86 8.08 -39.23 -0.32 -1.18 16 27 C -0.15 -1.33 9.94 -39.46 -0.39 -1.72 16 28 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.10 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.41 1.00 8.82 -40.82 -0.36 0.64 16 32 H 0.14 1.65 6.42 -52.49 -0.34 1.31 16 33 H 0.14 1.88 7.77 -52.49 -0.41 1.47 16 34 H 0.08 0.80 6.62 -51.93 -0.34 0.45 16 35 H 0.07 0.69 6.90 -51.93 -0.36 0.34 16 36 H 0.08 1.19 8.01 -51.93 -0.42 0.78 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.39 9.95 7.76 -40.82 -0.32 9.63 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.63 8.03 -51.93 -0.42 1.22 16 42 H 0.15 1.33 4.18 -52.48 -0.22 1.11 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -36.10 358.10 -8.34 -44.44 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.68 Total: 7.55 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.04 Total: 2.37 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.17 Total: -59.08 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.10 -8.34 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019695563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.885 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds