Wall clock time and date at job start Tue Mar 31 2020 11:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99756 * 2 1 4 4 N 1.34769 * 120.00210 * 179.97438 * 2 1 3 5 5 C 1.39441 * 120.00460 * 185.04615 * 4 2 1 6 6 C 1.39135 * 119.92441 * 33.73875 * 5 4 2 7 7 C 1.37671 * 120.07466 * 180.27502 * 6 5 4 8 8 C 1.39752 * 119.92188 * 359.46070 * 7 6 5 9 9 C 1.47595 * 120.07333 * 180.29227 * 8 7 6 10 10 O 1.21588 * 120.00064 * 340.02522 * 9 8 7 11 11 N 1.34772 * 120.00168 * 160.02771 * 9 8 7 12 12 C 1.47427 * 125.64929 * 354.21864 * 11 9 8 13 13 C 1.54905 * 104.83557 * 204.09244 * 12 11 9 14 14 C 1.55156 * 101.58045 * 322.99131 * 13 12 11 15 15 H 1.09004 * 110.71932 * 277.13453 * 14 13 12 16 16 N 1.46503 * 110.72452 * 154.04345 * 14 13 12 17 17 C 1.36934 * 120.00561 * 154.99660 * 16 14 13 18 18 H 1.08005 * 119.99903 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00015 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00376 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99925 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46962 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47400 * 119.99912 * 21 19 17 24 24 H 1.48502 * 109.47102 * 240.00199 * 21 19 17 25 25 C 1.47020 * 125.65084 * 173.91096 * 11 9 8 26 26 C 1.39752 * 119.85349 * 0.56575 * 8 7 6 27 27 C 1.37665 * 119.92504 * 359.70593 * 26 8 7 28 28 H 1.08999 * 109.47429 * 240.00873 * 1 2 3 29 29 H 1.09004 * 109.46812 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46894 * 120.00233 * 1 2 3 31 31 H 0.97003 * 120.00129 * 5.04316 * 4 2 1 32 32 H 1.07999 * 119.96084 * 0.02562 * 6 5 4 33 33 H 1.07993 * 120.03820 * 179.70536 * 7 6 5 34 34 H 1.09000 * 110.36593 * 322.92807 * 12 11 9 35 35 H 1.09001 * 110.36943 * 85.14316 * 12 11 9 36 36 H 1.09002 * 111.00535 * 81.06331 * 13 12 11 37 37 H 1.09001 * 111.01084 * 204.87513 * 13 12 11 38 38 H 0.97003 * 119.99429 * 334.99941 * 16 14 13 39 39 H 0.96997 * 120.00302 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88331 * 298.39470 * 25 11 9 41 41 H 1.08996 * 109.88695 * 59.56018 * 25 11 9 42 42 H 1.08007 * 120.03635 * 179.68864 * 26 8 7 43 43 H 1.08000 * 119.96447 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5712 -1.1695 0.1067 6 6 4.2106 -0.1980 0.8704 7 6 5.5835 -0.1940 0.9728 8 6 6.3343 -1.1740 0.3178 9 6 7.8059 -1.1767 0.4305 10 8 8.3918 -0.1657 0.7666 11 7 8.5003 -2.2998 0.1610 12 6 7.9165 -3.6201 -0.1380 13 6 9.0221 -4.6374 0.2393 14 6 10.3037 -3.8829 -0.2030 15 1 10.4804 -4.0157 -1.2704 16 7 11.4631 -4.3317 0.5721 17 6 12.7233 -4.2132 0.0499 18 1 12.8627 -3.7884 -0.9333 19 6 13.8217 -4.6389 0.7841 20 7 13.6519 -5.1570 1.9821 21 14 15.5411 -4.4766 0.0720 22 1 15.4613 -3.8680 -1.2803 23 1 16.3637 -3.6127 0.9563 24 1 16.1649 -5.8206 -0.0267 25 6 9.9655 -2.4099 0.1101 26 6 5.6889 -2.1480 -0.4490 27 6 4.3161 -2.1428 -0.5517 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8899 31 1 1.6987 -2.0056 -0.0729 32 1 3.6295 0.5562 1.3802 33 1 6.0795 0.5632 1.5619 34 1 7.0253 -3.7867 0.4671 35 1 7.6741 -3.6966 -1.1980 36 1 9.0303 -4.8252 1.3130 37 1 8.9039 -5.5673 -0.3169 38 1 11.3379 -4.7128 1.4553 39 1 14.4194 -5.4541 2.4953 40 1 10.3590 -1.7626 -0.6736 41 1 10.3920 -2.1304 1.0735 42 1 6.2665 -2.9037 -0.9605 43 1 3.8167 -2.8950 -1.1444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019695563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:06 Heat of formation + Delta-G solvation = -39.388243 kcal Electronic energy + Delta-G solvation = -25477.836933 eV Core-core repulsion = 21715.668867 eV Total energy + Delta-G solvation = -3762.168066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.82218 -41.10704 -39.29051 -38.55718 -36.09774 -35.80335 -33.49629 -32.12333 -31.93668 -31.11364 -30.01120 -28.74264 -26.16450 -25.01683 -23.91509 -23.48582 -21.70605 -21.51458 -20.79719 -19.35078 -18.82680 -18.48818 -17.83444 -17.51961 -17.02902 -16.52325 -16.47196 -15.66884 -15.60546 -15.32478 -15.25148 -15.08856 -14.80416 -14.44487 -14.30353 -14.06855 -13.86203 -13.65215 -13.42703 -13.32158 -13.06642 -12.98534 -12.92435 -12.61089 -12.44772 -12.09938 -12.08740 -11.74092 -11.59213 -11.48090 -11.18082 -11.03775 -10.92535 -10.04011 -9.74787 -9.20911 -9.10137 -7.97900 -5.27955 -0.27732 0.34465 1.40558 1.46759 1.48520 1.57757 1.82036 1.92569 2.07203 2.54703 2.79344 3.32478 3.48887 3.62251 3.71679 3.85871 3.92019 3.94173 4.09409 4.24929 4.33829 4.35198 4.36246 4.44002 4.56539 4.57354 4.64993 4.68989 4.88170 4.94681 4.99898 5.03129 5.11797 5.20042 5.20265 5.22679 5.34606 5.37665 5.41866 5.52192 5.87943 6.23995 6.40323 6.49342 7.04857 7.10861 7.30760 8.03224 8.25832 9.25234 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041075 B = 0.002216 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.513412 B =12629.530850 C =12996.156097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.577 6.577 4 N -0.659 5.659 5 C 0.169 3.831 6 C -0.144 4.144 7 C -0.059 4.059 8 C -0.161 4.161 9 C 0.560 3.440 10 O -0.598 6.598 11 N -0.607 5.607 12 C 0.097 3.903 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.079 0.921 16 N -0.725 5.725 17 C -0.245 4.245 18 H 0.080 0.920 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.299 1.299 24 H -0.290 1.290 25 C 0.091 3.909 26 C -0.071 4.071 27 C -0.137 4.137 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.436 0.564 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.375 0.625 39 H 0.251 0.749 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.172 0.828 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.067 0.267 -7.587 33.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.456 6.456 4 N -0.306 5.306 5 C 0.073 3.927 6 C -0.164 4.164 7 C -0.079 4.079 8 C -0.165 4.165 9 C 0.351 3.649 10 O -0.481 6.481 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.170 4.170 14 C 0.056 3.944 15 H 0.097 0.903 16 N -0.364 5.364 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.266 4.266 20 N -0.617 5.617 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.226 1.226 24 H -0.217 1.217 25 C -0.035 4.035 26 C -0.089 4.089 27 C -0.157 4.157 28 H 0.136 0.864 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.276 0.724 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.208 0.792 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.189 0.811 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -32.317 1.608 -7.524 33.220 hybrid contribution 1.594 0.307 0.676 1.758 sum -30.723 1.915 -6.848 31.535 Atomic orbital electron populations 1.21967 0.86461 1.06549 1.07186 1.22018 0.92849 0.82365 0.73436 1.90780 1.71993 1.33282 1.49518 1.43530 1.03976 1.11140 1.71942 1.18092 0.84422 0.95941 0.94222 1.20995 0.93623 1.00942 1.00834 1.21036 0.93628 0.96230 0.96963 1.19730 0.90705 1.00504 1.05585 1.18580 0.88036 0.81795 0.76441 1.90742 1.72365 1.34690 1.50321 1.48456 1.07254 1.10010 1.68124 1.23010 0.97239 0.79408 1.02709 1.23086 0.92766 0.98973 1.02190 1.21446 0.87528 0.89266 0.96205 0.90270 1.42550 1.01817 1.72898 1.19090 1.19708 0.84801 1.32944 1.00205 0.90231 1.25572 1.01783 1.02121 0.97116 1.69814 1.30238 1.48889 1.12808 0.85103 0.80113 0.76884 0.77827 1.18912 1.22626 1.21667 1.22875 0.79563 1.01463 0.99647 1.22056 0.95176 0.96359 0.95318 1.21234 0.92927 1.00876 1.00656 0.86357 0.89266 0.86119 0.72357 0.85527 0.86724 0.87556 0.87111 0.91754 0.86904 0.79213 0.93977 0.93416 0.95056 0.81119 0.80327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.36 10.32 71.24 0.74 0.38 16 2 C 0.50 6.41 7.67 87.66 0.67 7.08 16 3 O -0.58 -14.23 14.77 -3.03 -0.04 -14.28 16 4 N -0.66 -5.81 5.32 -303.50 -1.61 -7.42 16 5 C 0.17 2.73 6.27 38.36 0.24 2.97 16 6 C -0.14 -3.38 8.63 22.35 0.19 -3.19 16 7 C -0.06 -1.65 9.58 22.50 0.22 -1.43 16 8 C -0.16 -4.39 5.74 -20.08 -0.12 -4.50 16 9 C 0.56 20.01 7.68 86.71 0.67 20.67 16 10 O -0.60 -27.41 16.85 -3.99 -0.07 -27.47 16 11 N -0.61 -19.47 3.33 -815.46 -2.71 -22.18 16 12 C 0.10 2.02 4.94 86.85 0.43 2.45 16 13 C -0.13 -3.46 6.71 31.98 0.21 -3.25 16 14 C 0.17 6.13 3.60 46.18 0.17 6.29 16 15 H 0.08 2.77 8.09 -2.38 -0.02 2.75 16 16 N -0.73 -35.52 5.16 -317.30 -1.64 -37.16 16 17 C -0.24 -13.36 9.96 84.03 0.84 -12.52 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 20 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 21 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 C 0.09 3.58 6.64 86.73 0.58 4.15 16 26 C -0.07 -1.22 8.08 22.50 0.18 -1.04 16 27 C -0.14 -1.66 9.94 22.35 0.22 -1.44 16 28 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.09 0.41 8.12 -2.39 -0.02 0.39 16 30 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.44 -0.22 8.82 -92.71 -0.82 -1.04 16 32 H 0.13 3.21 6.42 -2.91 -0.02 3.19 16 33 H 0.11 3.58 7.77 -2.91 -0.02 3.56 16 34 H 0.11 1.69 6.62 -2.39 -0.02 1.67 16 35 H 0.11 1.52 6.90 -2.39 -0.02 1.50 16 36 H 0.06 1.89 8.01 -2.39 -0.02 1.87 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.34 16 38 H 0.38 19.86 7.76 -92.71 -0.72 19.15 16 39 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 41 H 0.03 1.48 8.03 -2.39 -0.02 1.46 16 42 H 0.17 2.08 4.18 -2.91 -0.01 2.07 16 43 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -86.42 358.10 1.46 -84.96 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.47 Total: 21.14 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.70 Total: 12.90 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -5.68 Total: -125.46 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.11 Total: -41.75 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -86.42 1.46 -84.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019695563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.574 kcal (2) G-P(sol) polarization free energy of solvation -86.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds