Wall clock time and date at job start Tue Mar 31 2020 11:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 119.99918 * 2 1 4 4 N 1.34769 * 120.00342 * 179.97438 * 2 1 3 5 5 C 1.39954 * 120.00084 * 175.58980 * 4 2 1 6 6 C 1.38995 * 119.99982 * 149.92977 * 5 4 2 7 7 C 1.38213 * 120.22725 * 179.97438 * 6 5 4 8 8 C 1.38028 * 120.21810 * 0.02562 * 7 6 5 9 9 C 1.39574 * 119.99807 * 359.97438 * 8 7 6 10 10 C 1.47850 * 120.11377 * 179.97438 * 9 8 7 11 11 O 1.21552 * 120.00657 * 188.67036 * 10 9 8 12 12 N 1.34776 * 119.99952 * 8.67197 * 10 9 8 13 13 C 1.47021 * 125.64882 * 354.41475 * 12 10 9 14 14 C 1.54337 * 107.26954 * 178.85122 * 13 12 10 15 15 C 1.55159 * 103.01912 * 338.14455 * 14 13 12 16 16 H 1.08999 * 111.00214 * 277.23413 * 15 14 13 17 17 N 1.46494 * 111.00182 * 153.37547 * 15 14 13 18 18 C 1.36936 * 119.99687 * 161.34896 * 17 15 14 19 19 H 1.08005 * 120.00553 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00103 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00030 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47180 * 89.99651 * 22 20 18 24 24 H 1.48496 * 109.46747 * 209.99669 * 22 20 18 25 25 H 1.48498 * 109.46952 * 329.99164 * 22 20 18 26 26 C 1.47432 * 125.65113 * 174.73009 * 12 10 9 27 27 C 1.38589 * 120.00018 * 329.64319 * 5 4 2 28 28 H 1.09000 * 109.47313 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47302 * 239.99609 * 1 2 3 30 30 H 1.09007 * 109.46448 * 120.00378 * 1 2 3 31 31 H 0.97011 * 120.00091 * 355.59338 * 4 2 1 32 32 H 1.08001 * 119.88696 * 359.94916 * 6 5 4 33 33 H 1.07987 * 119.89044 * 179.97438 * 7 6 5 34 34 H 1.07992 * 119.99757 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.88467 * 298.40476 * 13 12 10 36 36 H 1.09007 * 109.87991 * 59.56183 * 13 12 10 37 37 H 1.09000 * 110.84941 * 219.67633 * 14 13 12 38 38 H 1.08996 * 110.51119 * 96.45413 * 14 13 12 39 39 H 0.96995 * 120.00381 * 341.35773 * 17 15 14 40 40 H 0.97001 * 120.00316 * 180.02562 * 21 20 18 41 41 H 1.08993 * 110.36369 * 322.92902 * 26 12 10 42 42 H 1.09002 * 110.36423 * 85.14100 * 26 12 10 43 43 H 1.08004 * 120.11031 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5774 -1.1689 -0.0927 6 6 4.3123 -2.1872 0.5029 7 6 5.6916 -2.1939 0.4133 8 6 6.3483 -1.1890 -0.2678 9 6 5.6195 -0.1618 -0.8693 10 6 6.3204 0.9162 -1.5990 11 8 5.7033 1.8894 -1.9858 12 7 7.6438 0.8199 -1.8355 13 6 8.5302 -0.2375 -1.3279 14 6 9.9442 0.0473 -1.8768 15 6 9.6651 0.9363 -3.1174 16 1 9.4107 0.3276 -3.9850 17 7 10.8066 1.8079 -3.4063 18 6 10.9347 2.3807 -4.6435 19 1 10.1940 2.1903 -5.4062 20 6 12.0166 3.2061 -4.9176 21 7 12.9190 3.4387 -3.9881 22 14 12.1910 3.9881 -6.6051 23 1 11.5023 5.3037 -6.6146 24 1 13.6304 4.1806 -6.9150 25 1 11.5789 3.1015 -7.6271 26 6 8.4436 1.7611 -2.6405 27 6 4.2270 -0.1585 -0.7839 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3632 -0.5139 -0.8900 31 1 1.6981 -2.0060 0.0654 32 1 3.8040 -2.9758 1.0379 33 1 6.2572 -2.9875 0.8785 34 1 7.4261 -1.1975 -0.3352 35 1 8.5427 -0.2194 -0.2382 36 1 8.1866 -1.2101 -1.6805 37 1 10.4405 -0.8780 -2.1692 38 1 10.5380 0.5885 -1.1402 39 1 11.4717 1.9791 -2.7214 40 1 13.6748 4.0158 -4.1794 41 1 7.8669 2.1139 -3.4955 42 1 8.7676 2.6031 -2.0288 43 1 3.6574 0.6314 -1.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019766395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:10 Heat of formation + Delta-G solvation = 1.051184 kcal Electronic energy + Delta-G solvation = -25747.807598 eV Core-core repulsion = 21987.393117 eV Total energy + Delta-G solvation = -3760.414481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94567 -39.96299 -38.26165 -37.18668 -35.14416 -34.15882 -31.87926 -31.23936 -30.99067 -29.73419 -29.03215 -27.37704 -24.88329 -23.45115 -23.24573 -22.12067 -20.76367 -20.30910 -19.74431 -18.04984 -17.33923 -17.26485 -16.52751 -16.00153 -15.91761 -15.80070 -15.20754 -14.63560 -14.38454 -14.27174 -13.98208 -13.75288 -13.47635 -13.26869 -13.20500 -12.98961 -12.95013 -12.57896 -12.49695 -12.26835 -12.06233 -11.76210 -11.13974 -11.01684 -10.79205 -10.75004 -10.63735 -10.30625 -10.12158 -9.99029 -9.76552 -9.67777 -9.12178 -9.00199 -8.40706 -8.31474 -7.07318 -5.83001 -3.13723 0.72560 1.12357 2.22214 2.65106 2.97470 3.20905 3.43154 3.48793 3.49628 3.80454 4.29009 4.49103 4.55148 4.65897 4.78298 4.80740 4.88399 4.89055 5.02473 5.17974 5.19905 5.25520 5.31537 5.39898 5.46070 5.62979 5.72426 5.75607 5.91988 5.97740 6.07625 6.12347 6.16484 6.24944 6.26041 6.38085 6.54095 6.63277 6.76386 6.90144 6.99058 7.67157 7.74448 7.78076 8.34332 8.40007 9.46760 9.99521 10.34486 11.39038 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002558 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.416790 B =10944.083596 C =11843.222705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.513 6.513 4 N -0.675 5.675 5 C 0.132 3.868 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.140 4.140 9 C -0.103 4.103 10 C 0.565 3.435 11 O -0.535 6.535 12 N -0.607 5.607 13 C 0.094 3.906 14 C -0.143 4.143 15 C 0.172 3.828 16 H 0.065 0.935 17 N -0.712 5.712 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.083 3.917 27 C -0.069 4.069 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.411 0.589 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 -17.665 12.051 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.387 6.387 4 N -0.321 5.321 5 C 0.038 3.962 6 C -0.150 4.150 7 C -0.126 4.126 8 C -0.158 4.158 9 C -0.107 4.107 10 C 0.354 3.646 11 O -0.413 6.413 12 N -0.341 5.341 13 C -0.029 4.029 14 C -0.182 4.182 15 C 0.060 3.940 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.042 4.042 27 C -0.090 4.090 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.247 0.753 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.165 -16.256 11.637 29.114 hybrid contribution -0.006 0.056 -0.486 0.490 sum -21.170 -16.200 11.151 28.896 Atomic orbital electron populations 1.21926 0.90527 1.06181 1.04483 1.21098 0.91036 0.83198 0.75501 1.90831 1.70344 1.31126 1.46433 1.43583 1.04954 1.09966 1.73582 1.17611 0.82819 0.97247 0.98485 1.21023 0.94543 0.99123 1.00304 1.20933 0.93486 0.98890 0.99337 1.22810 1.03140 0.93219 0.96672 1.19858 0.93617 0.96224 1.01027 1.17921 0.80653 0.86120 0.79936 1.90790 1.65668 1.32316 1.52548 1.48401 1.06531 1.27846 1.51281 1.22492 0.90848 0.91318 0.98204 1.22986 0.94472 1.01453 0.99271 1.21311 0.87675 0.90679 0.94334 0.91699 1.42298 1.24020 1.55003 1.13839 1.19256 1.06367 1.22442 0.89786 0.90926 1.24771 0.97337 1.00372 0.98059 1.69656 1.13830 1.41466 1.32830 0.86166 0.76861 0.79438 0.83579 1.21543 1.21714 1.20638 1.23462 0.93229 0.93122 0.94420 1.21323 0.93378 0.98298 0.96037 0.88427 0.89131 0.88970 0.75298 0.85531 0.85015 0.81907 0.90827 0.90642 0.89941 0.90269 0.77817 0.93349 0.91010 0.91265 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.32 36.01 0.37 -0.41 16 2 C 0.50 4.83 7.71 -10.99 -0.08 4.74 16 3 O -0.51 -7.85 14.54 5.55 0.08 -7.77 16 4 N -0.67 -5.23 5.35 -9.89 -0.05 -5.29 16 5 C 0.13 1.43 6.34 -83.74 -0.53 0.90 16 6 C -0.13 -1.09 9.95 -39.31 -0.39 -1.48 16 7 C -0.11 -0.94 10.02 -39.67 -0.40 -1.33 16 8 C -0.14 -1.56 8.59 -39.16 -0.34 -1.90 16 9 C -0.10 -1.54 5.87 -104.99 -0.62 -2.15 16 10 C 0.56 10.34 7.80 -12.33 -0.10 10.25 16 11 O -0.54 -11.99 16.68 5.32 0.09 -11.90 16 12 N -0.61 -10.23 3.33 -174.81 -0.58 -10.81 16 13 C 0.09 1.19 4.88 -3.06 -0.01 1.18 16 14 C -0.14 -2.07 6.57 -24.89 -0.16 -2.24 16 15 C 0.17 3.31 3.69 -65.78 -0.24 3.07 16 16 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 17 N -0.71 -17.27 5.28 -51.35 -0.27 -17.54 16 18 C -0.25 -6.77 9.98 -15.06 -0.15 -6.92 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.08 1.62 6.58 -2.52 -0.02 1.60 16 27 C -0.07 -1.02 8.22 -38.98 -0.32 -1.34 16 28 H 0.10 0.52 8.12 -51.93 -0.42 0.09 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.41 1.41 8.81 -40.82 -0.36 1.05 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.16 1.56 2.78 -56.63 -0.16 1.40 16 35 H 0.07 0.79 6.79 -51.93 -0.35 0.43 16 36 H 0.08 0.79 6.68 -51.93 -0.35 0.44 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 39 H 0.39 9.87 7.71 -40.82 -0.31 9.56 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.15 2.61 5.78 -52.48 -0.30 2.31 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -36.98 356.82 -8.34 -45.32 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.60 Total: 8.58 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -3.09 Total: 3.63 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.18 Total: -60.56 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.98 -8.34 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019766395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.368 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds