Wall clock time and date at job start Tue Mar 31 2020 11:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 119.99918 * 2 1 4 4 N 1.34769 * 120.00342 * 179.97438 * 2 1 3 5 5 C 1.39954 * 120.00084 * 175.58980 * 4 2 1 6 6 C 1.38995 * 119.99982 * 149.92977 * 5 4 2 7 7 C 1.38213 * 120.22725 * 179.97438 * 6 5 4 8 8 C 1.38028 * 120.21810 * 0.02562 * 7 6 5 9 9 C 1.39574 * 119.99807 * 359.97438 * 8 7 6 10 10 C 1.47850 * 120.11377 * 179.97438 * 9 8 7 11 11 O 1.21552 * 120.00657 * 188.67036 * 10 9 8 12 12 N 1.34776 * 119.99952 * 8.67197 * 10 9 8 13 13 C 1.47021 * 125.64882 * 354.41475 * 12 10 9 14 14 C 1.54337 * 107.26954 * 178.85122 * 13 12 10 15 15 C 1.55159 * 103.01912 * 338.14455 * 14 13 12 16 16 H 1.08999 * 111.00214 * 277.23413 * 15 14 13 17 17 N 1.46494 * 111.00182 * 153.37547 * 15 14 13 18 18 C 1.36936 * 119.99687 * 161.34896 * 17 15 14 19 19 H 1.08005 * 120.00553 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00103 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00030 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47180 * 89.99651 * 22 20 18 24 24 H 1.48496 * 109.46747 * 209.99669 * 22 20 18 25 25 H 1.48498 * 109.46952 * 329.99164 * 22 20 18 26 26 C 1.47432 * 125.65113 * 174.73009 * 12 10 9 27 27 C 1.38589 * 120.00018 * 329.64319 * 5 4 2 28 28 H 1.09000 * 109.47313 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47302 * 239.99609 * 1 2 3 30 30 H 1.09007 * 109.46448 * 120.00378 * 1 2 3 31 31 H 0.97011 * 120.00091 * 355.59338 * 4 2 1 32 32 H 1.08001 * 119.88696 * 359.94916 * 6 5 4 33 33 H 1.07987 * 119.89044 * 179.97438 * 7 6 5 34 34 H 1.07992 * 119.99757 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.88467 * 298.40476 * 13 12 10 36 36 H 1.09007 * 109.87991 * 59.56183 * 13 12 10 37 37 H 1.09000 * 110.84941 * 219.67633 * 14 13 12 38 38 H 1.08996 * 110.51119 * 96.45413 * 14 13 12 39 39 H 0.96995 * 120.00381 * 341.35773 * 17 15 14 40 40 H 0.97001 * 120.00316 * 180.02562 * 21 20 18 41 41 H 1.08993 * 110.36369 * 322.92902 * 26 12 10 42 42 H 1.09002 * 110.36423 * 85.14100 * 26 12 10 43 43 H 1.08004 * 120.11031 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5774 -1.1689 -0.0927 6 6 4.3123 -2.1872 0.5029 7 6 5.6916 -2.1939 0.4133 8 6 6.3483 -1.1890 -0.2678 9 6 5.6195 -0.1618 -0.8693 10 6 6.3204 0.9162 -1.5990 11 8 5.7033 1.8894 -1.9858 12 7 7.6438 0.8199 -1.8355 13 6 8.5302 -0.2375 -1.3279 14 6 9.9442 0.0473 -1.8768 15 6 9.6651 0.9363 -3.1174 16 1 9.4107 0.3276 -3.9850 17 7 10.8066 1.8079 -3.4063 18 6 10.9347 2.3807 -4.6435 19 1 10.1940 2.1903 -5.4062 20 6 12.0166 3.2061 -4.9176 21 7 12.9190 3.4387 -3.9881 22 14 12.1910 3.9881 -6.6051 23 1 11.5023 5.3037 -6.6146 24 1 13.6304 4.1806 -6.9150 25 1 11.5789 3.1015 -7.6271 26 6 8.4436 1.7611 -2.6405 27 6 4.2270 -0.1585 -0.7839 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3632 -0.5139 -0.8900 31 1 1.6981 -2.0060 0.0654 32 1 3.8040 -2.9758 1.0379 33 1 6.2572 -2.9875 0.8785 34 1 7.4261 -1.1975 -0.3352 35 1 8.5427 -0.2194 -0.2382 36 1 8.1866 -1.2101 -1.6805 37 1 10.4405 -0.8780 -2.1692 38 1 10.5380 0.5885 -1.1402 39 1 11.4717 1.9791 -2.7214 40 1 13.6748 4.0158 -4.1794 41 1 7.8669 2.1139 -3.4955 42 1 8.7676 2.6031 -2.0288 43 1 3.6574 0.6314 -1.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019766395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:09 Heat of formation + Delta-G solvation = -27.342052 kcal Electronic energy + Delta-G solvation = -25749.038821 eV Core-core repulsion = 21987.393117 eV Total energy + Delta-G solvation = -3761.645704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88597 -41.09983 -39.26565 -38.63845 -36.22055 -35.76299 -33.51958 -32.16011 -31.93367 -31.17561 -29.94415 -28.70268 -26.39671 -25.06587 -24.17084 -23.18153 -21.80465 -21.48574 -21.03059 -19.42592 -18.92537 -18.11586 -17.51329 -17.43918 -16.98514 -16.64855 -16.42254 -16.30865 -15.58170 -15.46696 -15.16553 -15.02064 -14.79875 -14.53127 -14.37391 -14.03621 -13.87930 -13.76865 -13.46262 -13.31177 -13.06900 -12.94805 -12.87980 -12.67828 -12.36464 -12.11965 -12.02653 -11.77447 -11.58271 -11.47810 -11.13277 -10.98958 -10.92920 -10.07147 -9.70461 -9.19667 -9.10549 -7.99693 -5.29612 -0.19848 0.27131 1.45215 1.47443 1.47712 1.55157 1.79193 1.83402 2.10904 2.53262 2.84360 3.29393 3.40714 3.56495 3.77145 3.86080 3.97544 4.04063 4.12078 4.22383 4.24854 4.30383 4.37833 4.48953 4.52752 4.54828 4.60008 4.63601 4.79268 4.85674 4.95937 5.06075 5.13195 5.19431 5.23028 5.29381 5.33849 5.40800 5.42402 5.50366 5.94810 6.22395 6.40399 6.44012 7.00445 7.12392 7.29829 8.00819 8.25467 9.22862 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002558 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.416790 B =10944.083596 C =11843.222705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.494 3.506 3 O -0.583 6.583 4 N -0.658 5.658 5 C 0.125 3.875 6 C -0.107 4.107 7 C -0.095 4.095 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.555 3.445 11 O -0.598 6.598 12 N -0.605 5.605 13 C 0.093 3.907 14 C -0.129 4.129 15 C 0.167 3.833 16 H 0.065 0.935 17 N -0.722 5.722 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.068 4.068 21 N -0.963 5.963 22 Si 0.970 3.030 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.269 1.269 26 C 0.091 3.909 27 C -0.102 4.102 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.435 0.565 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.379 0.621 40 H 0.253 0.747 41 H 0.040 0.960 42 H 0.045 0.955 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.164 -22.472 13.916 34.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.285 3.715 3 O -0.461 6.461 4 N -0.306 5.306 5 C 0.030 3.970 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.153 4.153 9 C -0.135 4.135 10 C 0.347 3.653 11 O -0.481 6.481 12 N -0.337 5.337 13 C -0.028 4.028 14 C -0.167 4.167 15 C 0.056 3.944 16 H 0.083 0.917 17 N -0.361 5.361 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.261 4.261 21 N -0.613 5.613 22 Si 0.799 3.201 23 H -0.220 1.220 24 H -0.217 1.217 25 H -0.194 1.194 26 C -0.035 4.035 27 C -0.123 4.123 28 H 0.104 0.896 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.276 0.724 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.198 0.802 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.213 0.787 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.219 -21.179 13.517 33.540 hybrid contribution 0.190 1.458 -0.998 1.777 sum -22.029 -19.721 12.519 32.108 Atomic orbital electron populations 1.21954 0.86365 1.06391 1.07246 1.22101 0.93031 0.82561 0.73782 1.90823 1.72002 1.33666 1.49657 1.43509 1.04015 1.10722 1.72306 1.17789 0.84313 0.96852 0.97999 1.21571 0.94706 0.98385 0.98099 1.21494 0.93838 0.98534 0.97422 1.22988 1.03823 0.92442 0.96071 1.19621 0.93661 0.96863 1.03317 1.18709 0.80769 0.86429 0.79416 1.90740 1.67027 1.35002 1.55292 1.48419 1.06553 1.28131 1.50618 1.22876 0.88589 0.91286 1.00039 1.22942 0.95943 1.01383 0.96457 1.21467 0.85720 0.90482 0.96713 0.91682 1.42416 1.25219 1.55742 1.12723 1.19582 1.05785 1.21790 0.90879 0.90966 1.25524 0.97564 1.01575 1.01451 1.69788 1.14415 1.42584 1.34534 0.85204 0.76570 0.78322 0.80050 1.21966 1.21673 1.19391 1.23073 0.93575 0.93411 0.93488 1.21138 0.93593 0.99237 0.98375 0.89616 0.85706 0.86443 0.72437 0.80812 0.80332 0.80210 0.87658 0.87065 0.87008 0.90457 0.78745 0.93813 0.94130 0.93683 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.32 71.24 0.74 -0.45 16 2 C 0.49 9.47 7.71 87.66 0.68 10.15 16 3 O -0.58 -19.41 14.54 -3.05 -0.04 -19.46 16 4 N -0.66 -8.93 5.35 -303.61 -1.62 -10.55 16 5 C 0.13 2.50 6.34 38.11 0.24 2.74 16 6 C -0.11 -1.25 9.95 22.45 0.22 -1.03 16 7 C -0.09 -1.09 10.02 22.21 0.22 -0.87 16 8 C -0.14 -2.54 8.59 22.54 0.19 -2.35 16 9 C -0.13 -3.93 5.87 -20.10 -0.12 -4.05 16 10 C 0.56 21.63 7.80 86.79 0.68 22.31 16 11 O -0.60 -29.73 16.68 -3.88 -0.06 -29.79 16 12 N -0.61 -20.84 3.33 -825.24 -2.74 -23.59 16 13 C 0.09 2.09 4.88 86.73 0.42 2.51 16 14 C -0.13 -3.45 6.57 31.79 0.21 -3.24 16 15 C 0.17 6.48 3.69 46.39 0.17 6.65 16 16 H 0.07 2.54 8.13 -2.39 -0.02 2.52 16 17 N -0.72 -35.81 5.28 -316.37 -1.67 -37.48 16 18 C -0.25 -13.89 9.98 84.03 0.84 -13.05 16 19 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.96 -58.54 13.06 21.65 0.28 -58.26 16 22 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.09 3.78 6.58 86.85 0.57 4.35 16 27 C -0.10 -3.15 8.22 22.66 0.19 -2.96 16 28 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 29 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.44 1.33 8.81 -92.70 -0.82 0.51 16 32 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.18 0.53 8.06 -2.92 -0.02 0.50 16 34 H 0.18 2.58 2.78 -6.81 -0.02 2.57 16 35 H 0.11 1.81 6.79 -2.39 -0.02 1.79 16 36 H 0.11 1.81 6.68 -2.38 -0.02 1.79 16 37 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 39 H 0.38 19.80 7.71 -92.71 -0.71 19.09 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.04 1.89 8.09 -2.39 -0.02 1.87 16 42 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.11 4.17 5.78 -2.91 -0.02 4.15 16 Total: -1.00 -91.69 356.82 1.41 -90.29 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.47 Total: 22.74 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 5.72 Total: 17.24 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.76 Total: -129.88 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.11 Total: -49.25 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -91.69 1.41 -90.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019766395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.945 kcal (2) G-P(sol) polarization free energy of solvation -91.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds