Wall clock time and date at job start Tue Mar 31 2020 11:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99903 * 2 1 4 4 O 1.21545 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47864 * 119.99591 * 179.97438 * 3 2 1 6 6 C 1.39704 * 120.07551 * 359.72489 * 5 3 2 7 7 C 1.38060 * 120.14102 * 179.73603 * 6 5 3 8 8 C 1.38095 * 120.29964 * 0.51822 * 7 6 5 9 9 C 1.39666 * 120.14389 * 359.76067 * 8 7 6 10 10 C 1.47865 * 120.07589 * 180.02562 * 9 8 7 11 11 O 1.21544 * 120.00008 * 172.96534 * 10 9 8 12 12 N 1.34775 * 119.99436 * 352.96213 * 10 9 8 13 13 C 1.47018 * 125.65229 * 5.49015 * 12 10 9 14 14 C 1.54332 * 107.26607 * 178.84968 * 13 12 10 15 15 C 1.55155 * 103.02090 * 338.13416 * 14 13 12 16 16 H 1.09000 * 111.00268 * 277.23686 * 15 14 13 17 17 N 1.46496 * 111.00565 * 153.38621 * 15 14 13 18 18 C 1.36942 * 119.99947 * 161.35424 * 17 15 14 19 19 H 1.08000 * 120.00044 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99666 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00213 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99686 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47297 * 89.99849 * 22 20 18 24 24 H 1.48497 * 109.47238 * 209.99440 * 22 20 18 25 25 H 1.48503 * 109.47479 * 329.99870 * 22 20 18 26 26 C 1.47428 * 125.64383 * 185.78745 * 12 10 9 27 27 C 1.39296 * 120.06694 * 179.97438 * 5 3 2 28 28 H 1.09000 * 109.47451 * 300.00227 * 1 2 3 29 29 H 1.09003 * 109.46838 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46781 * 60.00605 * 1 2 3 31 31 H 0.97001 * 119.99800 * 179.97438 * 2 1 3 32 32 H 1.07997 * 119.93024 * 359.97438 * 6 5 3 33 33 H 1.08008 * 119.84922 * 180.25752 * 7 6 5 34 34 H 1.07995 * 119.93074 * 179.73996 * 8 7 6 35 35 H 1.09006 * 109.87866 * 298.38401 * 13 12 10 36 36 H 1.08996 * 109.88730 * 59.55195 * 13 12 10 37 37 H 1.09007 * 110.85091 * 219.67115 * 14 13 12 38 38 H 1.08997 * 110.52033 * 96.44912 * 14 13 12 39 39 H 0.97001 * 120.00460 * 341.34922 * 17 15 14 40 40 H 0.96998 * 119.99729 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.36874 * 322.93376 * 26 12 10 42 42 H 1.08999 * 110.36286 * 85.14693 * 26 12 10 43 43 H 1.07995 * 120.15367 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2198 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0418 0.0069 7 6 5.6981 -0.0435 0.0020 8 6 6.3963 1.1479 0.0015 9 6 5.7088 2.3637 0.0010 10 6 6.4579 3.6386 -0.0001 11 8 5.8651 4.6917 -0.1294 12 7 7.7981 3.6327 0.1424 13 6 8.6492 2.4350 0.1932 14 6 10.1088 2.9159 0.3349 15 6 10.0518 4.3696 -0.2043 16 1 10.1132 4.3854 -1.2925 17 7 11.1076 5.1924 0.3911 18 6 11.4798 6.3667 -0.2070 19 1 10.9952 6.6861 -1.1178 20 6 12.4799 7.1465 0.3575 21 7 13.0700 6.7575 1.4678 22 14 12.9880 8.7481 -0.4587 23 1 12.1623 9.8602 0.0765 24 1 14.4211 9.0151 -0.1754 25 1 12.7848 8.6423 -1.9259 26 6 8.6528 4.8261 0.2794 27 6 4.3154 2.3726 0.0000 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.9500 -0.8401 0.0004 32 1 3.7776 -0.9771 0.0118 33 1 6.2346 -0.9810 0.0027 34 1 7.4762 1.1397 0.0019 35 1 8.3743 1.8210 1.0510 36 1 8.5374 1.8614 -0.7269 37 1 10.7789 2.3059 -0.2711 38 1 10.4151 2.9043 1.3809 39 1 11.5430 4.9054 1.2090 40 1 13.7686 7.3026 1.8624 41 1 8.2792 5.6345 -0.3490 42 1 8.6950 5.1448 1.3209 43 1 3.7791 3.3100 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019795288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:22 Heat of formation + Delta-G solvation = 0.894405 kcal Electronic energy + Delta-G solvation = -25495.410082 eV Core-core repulsion = 21734.988803 eV Total energy + Delta-G solvation = -3760.421279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80899 -39.89785 -38.19889 -37.27399 -35.07185 -34.32638 -32.31325 -31.38969 -31.18405 -29.78279 -28.03364 -27.00173 -25.04231 -23.86806 -22.95294 -22.53093 -21.01844 -20.32549 -19.83818 -18.39178 -17.32562 -16.88219 -16.58197 -16.09914 -15.86120 -15.59842 -15.48512 -14.65768 -14.57292 -14.36570 -14.09644 -13.96141 -13.54769 -13.44463 -13.31194 -13.08405 -12.73447 -12.69784 -12.50321 -12.35238 -12.18811 -11.68264 -11.18566 -11.07425 -10.80839 -10.69956 -10.39666 -10.32549 -10.04654 -9.83514 -9.76278 -9.62355 -9.34154 -9.29528 -9.04123 -8.42899 -7.11193 -5.86298 -3.17276 0.36269 0.80163 2.35093 2.72814 3.00605 3.10448 3.41144 3.47069 3.47774 3.67941 4.25316 4.27989 4.45182 4.52174 4.65180 4.71113 4.80157 4.91219 5.05701 5.06832 5.09368 5.12597 5.30307 5.38137 5.40947 5.56752 5.61180 5.68206 5.84719 5.88259 5.92355 5.93705 6.00605 6.06262 6.18580 6.30329 6.39183 6.48938 6.58590 6.83306 7.02818 7.64371 7.66189 7.82205 8.25891 8.31504 9.43523 9.95619 10.30426 11.35622 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032349 B = 0.002327 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.341777 B =12028.076242 C =12712.568147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.559 3.441 4 O -0.529 6.529 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.099 4.099 9 C -0.130 4.130 10 C 0.566 3.434 11 O -0.535 6.535 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.143 4.143 15 C 0.172 3.828 16 H 0.066 0.934 17 N -0.711 5.711 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.081 3.919 27 C -0.003 4.003 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.401 0.599 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.170 0.830 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.971 -22.684 -2.257 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.347 3.653 4 O -0.406 6.406 5 C -0.152 4.152 6 C -0.088 4.088 7 C -0.152 4.152 8 C -0.117 4.117 9 C -0.133 4.133 10 C 0.354 3.646 11 O -0.413 6.413 12 N -0.340 5.340 13 C -0.030 4.030 14 C -0.182 4.182 15 C 0.060 3.940 16 H 0.083 0.917 17 N -0.351 5.351 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.044 4.044 27 C -0.022 4.022 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.236 0.764 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.186 0.814 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.753 -21.172 -2.437 28.388 hybrid contribution 0.552 0.256 -0.020 0.609 sum -18.201 -20.916 -2.457 27.835 Atomic orbital electron populations 1.21568 0.79059 1.02339 1.02663 1.45686 1.07957 1.08510 1.76491 1.18272 0.87159 0.83787 0.76114 1.90814 1.69808 1.31090 1.48844 1.19794 0.92737 0.94261 1.08422 1.21445 0.94896 0.96642 0.95797 1.21115 0.93734 0.98534 1.01812 1.23133 1.03627 0.91504 0.93415 1.19990 0.93808 0.93718 1.05766 1.17856 0.80801 0.88480 0.77431 1.90798 1.67826 1.32638 1.50044 1.48403 1.05042 1.09555 1.70994 1.22502 0.91503 0.88360 1.00677 1.22986 0.93637 0.98543 1.02999 1.21309 0.87210 0.88616 0.96877 0.91654 1.42298 1.39833 1.23127 1.29875 1.19256 1.15406 0.97107 1.06199 0.90888 1.24774 0.98987 0.99202 0.97534 1.69656 1.28276 1.39221 1.20588 0.86164 0.77568 0.83560 0.78728 1.21524 1.21704 1.20614 1.23502 0.91757 0.87075 1.02068 1.21400 0.92508 0.98481 0.89838 0.91990 0.90491 0.91982 0.76429 0.85479 0.84633 0.81375 0.90767 0.90637 0.89880 0.90184 0.77814 0.93330 0.90734 0.91157 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.85 0.64 1.13 16 2 N -0.73 -5.07 5.66 -68.04 -0.39 -5.45 16 3 C 0.56 6.27 7.77 -12.32 -0.10 6.18 16 4 O -0.53 -8.18 16.34 5.33 0.09 -8.10 16 5 C -0.15 -1.58 5.87 -105.02 -0.62 -2.19 16 6 C -0.07 -0.49 9.54 -39.10 -0.37 -0.86 16 7 C -0.13 -0.94 10.02 -39.70 -0.40 -1.34 16 8 C -0.10 -0.93 8.61 -39.10 -0.34 -1.27 16 9 C -0.13 -1.70 5.87 -105.01 -0.62 -2.32 16 10 C 0.57 9.47 7.81 -12.32 -0.10 9.37 16 11 O -0.54 -11.10 16.59 5.33 0.09 -11.01 16 12 N -0.61 -9.45 3.33 -176.41 -0.59 -10.03 16 13 C 0.09 1.05 4.87 -3.06 -0.01 1.04 16 14 C -0.14 -1.94 6.57 -24.89 -0.16 -2.10 16 15 C 0.17 3.18 3.69 -65.79 -0.24 2.93 16 16 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 17 N -0.71 -16.80 5.28 -51.35 -0.27 -17.07 16 18 C -0.25 -6.68 9.98 -15.06 -0.15 -6.83 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.08 1.50 6.63 -2.53 -0.02 1.49 16 27 C 0.00 -0.03 9.14 -38.78 -0.35 -0.39 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 1.43 6.85 -40.82 -0.28 1.15 16 32 H 0.13 0.42 6.39 -52.49 -0.34 0.08 16 33 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.17 1.32 2.72 -58.68 -0.16 1.16 16 35 H 0.07 0.69 6.75 -51.93 -0.35 0.33 16 36 H 0.08 0.69 6.73 -51.93 -0.35 0.34 16 37 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 38 H 0.08 1.11 8.00 -51.93 -0.42 0.69 16 39 H 0.39 9.62 7.71 -40.82 -0.31 9.30 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 1.53 7.98 -51.93 -0.41 1.12 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.15 2.31 7.25 -52.49 -0.38 1.93 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -35.60 357.11 -8.42 -44.02 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.50 Total: 7.19 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.93 Total: 4.52 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.52 Total: -59.06 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.18 Total: -19.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.60 -8.42 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019795288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.915 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds