Wall clock time and date at job start Tue Mar 31 2020 11:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99903 * 2 1 4 4 O 1.21545 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47864 * 119.99591 * 179.97438 * 3 2 1 6 6 C 1.39704 * 120.07551 * 359.72489 * 5 3 2 7 7 C 1.38060 * 120.14102 * 179.73603 * 6 5 3 8 8 C 1.38095 * 120.29964 * 0.51822 * 7 6 5 9 9 C 1.39666 * 120.14389 * 359.76067 * 8 7 6 10 10 C 1.47865 * 120.07589 * 180.02562 * 9 8 7 11 11 O 1.21544 * 120.00008 * 172.96534 * 10 9 8 12 12 N 1.34775 * 119.99436 * 352.96213 * 10 9 8 13 13 C 1.47018 * 125.65229 * 5.49015 * 12 10 9 14 14 C 1.54332 * 107.26607 * 178.84968 * 13 12 10 15 15 C 1.55155 * 103.02090 * 338.13416 * 14 13 12 16 16 H 1.09000 * 111.00268 * 277.23686 * 15 14 13 17 17 N 1.46496 * 111.00565 * 153.38621 * 15 14 13 18 18 C 1.36942 * 119.99947 * 161.35424 * 17 15 14 19 19 H 1.08000 * 120.00044 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99666 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00213 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99686 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47297 * 89.99849 * 22 20 18 24 24 H 1.48497 * 109.47238 * 209.99440 * 22 20 18 25 25 H 1.48503 * 109.47479 * 329.99870 * 22 20 18 26 26 C 1.47428 * 125.64383 * 185.78745 * 12 10 9 27 27 C 1.39296 * 120.06694 * 179.97438 * 5 3 2 28 28 H 1.09000 * 109.47451 * 300.00227 * 1 2 3 29 29 H 1.09003 * 109.46838 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46781 * 60.00605 * 1 2 3 31 31 H 0.97001 * 119.99800 * 179.97438 * 2 1 3 32 32 H 1.07997 * 119.93024 * 359.97438 * 6 5 3 33 33 H 1.08008 * 119.84922 * 180.25752 * 7 6 5 34 34 H 1.07995 * 119.93074 * 179.73996 * 8 7 6 35 35 H 1.09006 * 109.87866 * 298.38401 * 13 12 10 36 36 H 1.08996 * 109.88730 * 59.55195 * 13 12 10 37 37 H 1.09007 * 110.85091 * 219.67115 * 14 13 12 38 38 H 1.08997 * 110.52033 * 96.44912 * 14 13 12 39 39 H 0.97001 * 120.00460 * 341.34922 * 17 15 14 40 40 H 0.96998 * 119.99729 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.36874 * 322.93376 * 26 12 10 42 42 H 1.08999 * 110.36286 * 85.14693 * 26 12 10 43 43 H 1.07995 * 120.15367 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2198 -0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0418 0.0069 7 6 5.6981 -0.0435 0.0020 8 6 6.3963 1.1479 0.0015 9 6 5.7088 2.3637 0.0010 10 6 6.4579 3.6386 -0.0001 11 8 5.8651 4.6917 -0.1294 12 7 7.7981 3.6327 0.1424 13 6 8.6492 2.4350 0.1932 14 6 10.1088 2.9159 0.3349 15 6 10.0518 4.3696 -0.2043 16 1 10.1132 4.3854 -1.2925 17 7 11.1076 5.1924 0.3911 18 6 11.4798 6.3667 -0.2070 19 1 10.9952 6.6861 -1.1178 20 6 12.4799 7.1465 0.3575 21 7 13.0700 6.7575 1.4678 22 14 12.9880 8.7481 -0.4587 23 1 12.1623 9.8602 0.0765 24 1 14.4211 9.0151 -0.1754 25 1 12.7848 8.6423 -1.9259 26 6 8.6528 4.8261 0.2794 27 6 4.3154 2.3726 0.0000 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.9500 -0.8401 0.0004 32 1 3.7776 -0.9771 0.0118 33 1 6.2346 -0.9810 0.0027 34 1 7.4762 1.1397 0.0019 35 1 8.3743 1.8210 1.0510 36 1 8.5374 1.8614 -0.7269 37 1 10.7789 2.3059 -0.2711 38 1 10.4151 2.9043 1.3809 39 1 11.5430 4.9054 1.2090 40 1 13.7686 7.3026 1.8624 41 1 8.2792 5.6345 -0.3490 42 1 8.6950 5.1448 1.3209 43 1 3.7791 3.3100 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019795288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:21 Heat of formation + Delta-G solvation = -26.721017 kcal Electronic energy + Delta-G solvation = -25496.607577 eV Core-core repulsion = 21734.988803 eV Total energy + Delta-G solvation = -3761.618774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79956 -40.91751 -39.17511 -38.59332 -36.07345 -35.82412 -33.71055 -32.51347 -32.14930 -31.17111 -29.34926 -27.80047 -26.37356 -25.27872 -24.03475 -23.50519 -21.85634 -21.71517 -20.94004 -19.50328 -19.10176 -17.89007 -17.47493 -17.34028 -16.75212 -16.66697 -16.42031 -16.29285 -15.72018 -15.47434 -15.23261 -15.00374 -14.78752 -14.74227 -14.35811 -14.16660 -13.88850 -13.82929 -13.49052 -13.35477 -13.12502 -12.94851 -12.89105 -12.54806 -12.34102 -12.11620 -12.00828 -11.73457 -11.50025 -11.29124 -11.09444 -10.96112 -10.37718 -10.16809 -9.99537 -9.72316 -9.09136 -7.99239 -5.28742 -0.40110 -0.05136 1.45969 1.48066 1.49772 1.55498 1.78216 1.96466 2.15980 2.53741 2.81591 3.28418 3.38021 3.53857 3.63745 3.82970 3.90799 3.99384 4.02552 4.14695 4.23278 4.30806 4.32273 4.42794 4.52518 4.59525 4.60319 4.65809 4.81970 4.87077 4.94643 4.97009 5.08839 5.17295 5.21238 5.24738 5.25983 5.31785 5.35885 5.51119 5.74941 6.23182 6.42843 6.45113 6.98239 7.12098 7.30786 8.02156 8.26339 9.23158 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032349 B = 0.002327 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.341777 B =12028.076242 C =12712.568147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.551 3.449 4 O -0.588 6.588 5 C -0.158 4.158 6 C -0.045 4.045 7 C -0.116 4.116 8 C -0.089 4.089 9 C -0.151 4.151 10 C 0.557 3.443 11 O -0.596 6.596 12 N -0.605 5.605 13 C 0.090 3.910 14 C -0.129 4.129 15 C 0.165 3.835 16 H 0.063 0.937 17 N -0.722 5.722 18 C -0.248 4.248 19 H 0.072 0.928 20 C -0.068 4.068 21 N -0.963 5.963 22 Si 0.968 3.032 23 H -0.292 1.292 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.089 3.911 27 C -0.031 4.031 28 H 0.048 0.952 29 H 0.121 0.879 30 H 0.049 0.951 31 H 0.421 0.579 32 H 0.178 0.822 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.380 0.620 40 H 0.253 0.747 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -28.203 -2.893 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.339 3.661 4 O -0.469 6.469 5 C -0.161 4.161 6 C -0.063 4.063 7 C -0.133 4.133 8 C -0.106 4.106 9 C -0.154 4.154 10 C 0.348 3.652 11 O -0.479 6.479 12 N -0.337 5.337 13 C -0.031 4.031 14 C -0.167 4.167 15 C 0.054 3.946 16 H 0.081 0.919 17 N -0.361 5.361 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.261 4.261 21 N -0.612 5.612 22 Si 0.797 3.203 23 H -0.220 1.220 24 H -0.217 1.217 25 H -0.195 1.195 26 C -0.037 4.037 27 C -0.051 4.051 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.260 0.740 32 H 0.195 0.805 33 H 0.206 0.794 34 H 0.206 0.794 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.213 0.787 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.689 -26.807 -3.098 32.825 hybrid contribution 0.399 1.839 0.162 1.889 sum -18.290 -24.968 -2.936 31.089 Atomic orbital electron populations 1.21750 0.78136 1.04800 1.01471 1.45559 1.08587 1.07996 1.74198 1.18561 0.87677 0.84147 0.75678 1.90788 1.70883 1.33416 1.51850 1.19819 0.92460 0.94673 1.09185 1.21991 0.95450 0.96662 0.92195 1.21697 0.93583 0.99295 0.98711 1.23353 1.04560 0.90591 0.92143 1.19669 0.93226 0.93260 1.09212 1.18605 0.80953 0.89406 0.76194 1.90753 1.69065 1.35174 1.52874 1.48404 1.04960 1.09908 1.70422 1.22915 0.88932 0.87033 1.04192 1.22938 0.95875 0.94821 1.03098 1.21481 0.85164 0.91303 0.96625 0.91875 1.42411 1.40976 1.22993 1.29713 1.19572 1.14504 0.98063 1.05817 0.91014 1.25498 0.99802 1.02303 0.98467 1.69781 1.29091 1.40346 1.22012 0.85227 0.76799 0.79917 0.78333 1.21984 1.21747 1.19492 1.23075 0.92737 0.87906 0.99952 1.21173 0.93023 0.98318 0.92624 0.93276 0.86075 0.93257 0.74005 0.80522 0.79450 0.79381 0.87199 0.86828 0.87090 0.90325 0.78712 0.93841 0.94077 0.93296 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.70 127.77 1.37 2.13 16 2 N -0.71 -7.92 5.66 -487.45 -2.76 -10.68 16 3 C 0.55 12.19 7.77 86.79 0.67 12.86 16 4 O -0.59 -19.57 16.34 -3.86 -0.06 -19.64 16 5 C -0.16 -3.14 5.87 -20.12 -0.12 -3.26 16 6 C -0.04 -0.39 9.54 22.58 0.22 -0.17 16 7 C -0.12 -0.83 10.02 22.19 0.22 -0.61 16 8 C -0.09 -1.28 8.61 22.58 0.19 -1.08 16 9 C -0.15 -3.90 5.87 -20.12 -0.12 -4.02 16 10 C 0.56 19.56 7.81 86.79 0.68 20.24 16 11 O -0.60 -27.33 16.59 -3.85 -0.06 -27.40 16 12 N -0.61 -18.85 3.33 -830.31 -2.76 -21.61 16 13 C 0.09 1.72 4.87 86.73 0.42 2.14 16 14 C -0.13 -3.14 6.57 31.78 0.21 -2.93 16 15 C 0.17 6.09 3.69 46.38 0.17 6.26 16 16 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 17 N -0.72 -34.70 5.28 -316.38 -1.67 -36.37 16 18 C -0.25 -13.57 9.98 84.03 0.84 -12.73 16 19 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 21 N -0.96 -57.53 13.06 21.65 0.28 -57.25 16 22 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.09 3.50 6.63 86.85 0.58 4.07 16 27 C -0.03 -0.88 9.14 22.79 0.21 -0.67 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.42 0.91 6.85 -92.71 -0.64 0.27 16 32 H 0.18 -0.23 6.39 -2.91 -0.02 -0.25 16 33 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 34 H 0.19 1.80 2.72 -8.73 -0.02 1.78 16 35 H 0.11 1.44 6.75 -2.38 -0.02 1.42 16 36 H 0.11 1.41 6.73 -2.39 -0.02 1.40 16 37 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 39 H 0.38 19.21 7.71 -92.71 -0.71 18.49 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.04 1.84 7.98 -2.39 -0.02 1.82 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.10 3.78 7.25 -2.91 -0.02 3.76 16 Total: -1.00 -88.72 357.11 0.70 -88.01 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.30 Total: 17.78 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 6.01 Total: 18.87 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.91 Total: -125.90 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.13 Total: -47.03 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -88.72 0.70 -88.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019795288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.291 kcal (2) G-P(sol) polarization free energy of solvation -88.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds