Wall clock time and date at job start Tue Mar 31 2020 11:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21292 * 119.99738 * 2 1 4 4 N 1.34781 * 120.00052 * 180.02562 * 2 1 3 5 5 C 1.39952 * 119.99842 * 185.27614 * 4 2 1 6 6 C 1.38991 * 119.99738 * 213.33877 * 5 4 2 7 7 C 1.38210 * 120.22237 * 180.02562 * 6 5 4 8 8 C 1.38024 * 120.22146 * 359.73947 * 7 6 5 9 9 C 1.39574 * 119.99647 * 0.50940 * 8 7 6 10 10 C 1.47867 * 120.11121 * 179.76600 * 9 8 7 11 11 O 1.21551 * 119.99805 * 179.72309 * 10 9 8 12 12 N 1.34770 * 119.99878 * 359.72694 * 10 9 8 13 13 C 1.46506 * 119.99949 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84792 * 23.80506 * 13 12 10 15 15 C 1.53778 * 113.61536 * 154.99863 * 13 12 10 16 16 C 1.53789 * 87.07907 * 89.20178 * 15 13 12 17 17 H 1.08995 * 113.61033 * 270.79796 * 16 15 13 18 18 N 1.46494 * 113.61220 * 139.98314 * 16 15 13 19 19 C 1.36935 * 120.00257 * 155.00108 * 18 16 15 20 20 H 1.08004 * 119.99567 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00522 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99768 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47388 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46877 * 120.00204 * 23 21 19 26 26 H 1.48500 * 109.47352 * 240.00054 * 23 21 19 27 27 C 1.53777 * 113.69260 * 252.53845 * 13 12 10 28 28 C 1.38598 * 120.00013 * 33.35976 * 5 4 2 29 29 H 1.09002 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46989 * 299.99700 * 1 2 3 31 31 H 1.09003 * 109.47239 * 59.99917 * 1 2 3 32 32 H 0.97000 * 120.00039 * 5.27104 * 4 2 1 33 33 H 1.08000 * 119.88828 * 0.03888 * 6 5 4 34 34 H 1.07998 * 119.88886 * 179.97438 * 7 6 5 35 35 H 1.08004 * 120.00276 * 180.25668 * 8 7 6 36 36 H 0.96998 * 120.00191 * 359.97438 * 12 10 9 37 37 H 1.09003 * 113.61629 * 334.65410 * 15 13 12 38 38 H 1.08994 * 113.69109 * 203.76244 * 15 13 12 39 39 H 0.97004 * 120.00042 * 334.99840 * 18 16 15 40 40 H 0.97002 * 119.99682 * 0.02562 * 22 21 19 41 41 H 1.08990 * 113.61742 * 156.32539 * 27 13 12 42 42 H 1.09008 * 113.61382 * 25.41579 * 27 13 12 43 43 H 1.08003 * 120.11261 * 359.95292 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5760 -1.1698 0.1109 6 6 4.3233 -2.1449 -0.5392 7 6 5.7012 -2.1522 -0.4318 8 6 6.3447 -1.1879 0.3172 9 6 5.6031 -0.2075 0.9782 10 6 6.2896 0.8236 1.7855 11 8 5.6420 1.6795 2.3562 12 7 7.6333 0.8145 1.8887 13 6 8.3136 1.8365 2.6882 14 1 7.6718 2.2709 3.4545 15 6 9.6883 1.3922 3.2152 16 6 10.2807 1.9468 1.9089 17 1 10.3143 1.2166 1.1003 18 7 11.5524 2.6502 2.0934 19 6 12.4387 2.7465 1.0541 20 1 12.2000 2.3042 0.0981 21 6 13.6435 3.4136 1.2288 22 7 13.9337 3.9540 2.3933 23 14 14.8528 3.5443 -0.1889 24 1 14.2933 2.8591 -1.3816 25 1 15.0903 4.9754 -0.5066 26 1 16.1361 2.9028 0.1944 27 6 9.0623 2.8829 1.8459 28 6 4.2124 -0.2003 0.8699 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6990 -2.0055 -0.0781 33 1 3.8255 -2.8994 -1.1303 34 1 6.2765 -2.9126 -0.9389 35 1 7.4219 -1.1945 0.3953 36 1 8.1501 0.1314 1.4336 37 1 9.7888 0.3116 3.3162 38 1 10.0115 1.9323 4.1051 39 1 11.7665 3.0479 2.9519 40 1 13.3058 3.8858 3.1295 41 1 9.2133 3.8313 2.3613 42 1 8.6574 3.0056 0.8413 43 1 3.6335 0.5585 1.3754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021043011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:21 Heat of formation + Delta-G solvation = -7.123988 kcal Electronic energy + Delta-G solvation = -25260.310635 eV Core-core repulsion = 21499.541652 eV Total energy + Delta-G solvation = -3760.768983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99848 -40.04709 -38.69629 -37.68525 -35.19355 -34.28912 -32.85645 -31.35698 -31.22596 -29.60058 -28.82697 -25.18506 -24.95816 -23.76741 -23.26921 -22.31313 -20.95875 -20.77144 -19.08307 -18.53329 -17.40845 -17.33804 -16.62778 -16.43715 -15.91503 -15.73950 -15.20561 -14.80038 -14.75951 -14.43444 -14.16629 -13.87559 -13.80189 -13.51019 -13.29861 -13.08412 -13.00184 -12.61804 -12.24091 -12.17642 -11.96038 -11.87669 -11.52203 -10.84242 -10.79835 -10.52729 -10.29833 -10.27438 -10.11924 -9.96211 -9.88356 -9.28047 -9.15968 -8.91270 -8.78490 -8.54853 -7.04623 -6.12464 -3.12463 0.56329 0.98827 2.13202 2.57452 2.80211 3.16585 3.51150 3.57873 3.66895 3.67136 4.23658 4.47577 4.54189 4.63258 4.66593 4.79508 4.81871 4.89702 4.98799 5.09921 5.14692 5.16575 5.30812 5.38410 5.50291 5.56831 5.80305 5.82897 5.86357 5.92328 6.00927 6.07140 6.10416 6.17053 6.24871 6.46134 6.57397 6.60982 6.63255 6.89649 7.01741 7.56990 7.66714 7.80022 8.25707 8.73620 9.20175 10.06508 10.21429 11.35847 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002279 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.352252 B =12280.941564 C =12658.572097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.516 6.516 4 N -0.675 5.675 5 C 0.134 3.866 6 C -0.124 4.124 7 C -0.106 4.106 8 C -0.101 4.101 9 C -0.110 4.110 10 C 0.558 3.442 11 O -0.534 6.534 12 N -0.701 5.701 13 C 0.117 3.883 14 H 0.098 0.902 15 C -0.160 4.160 16 C 0.172 3.828 17 H 0.075 0.925 18 N -0.724 5.724 19 C -0.336 4.336 20 H 0.066 0.934 21 C -0.045 4.045 22 N -0.943 5.943 23 Si 1.086 2.914 24 H -0.295 1.295 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.176 4.176 28 C -0.064 4.064 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.400 0.600 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.369 0.631 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.699 -17.689 -5.031 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.293 3.707 3 O -0.390 6.390 4 N -0.322 5.322 5 C 0.040 3.960 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.114 4.114 10 C 0.344 3.656 11 O -0.411 6.411 12 N -0.352 5.352 13 C 0.012 3.988 14 H 0.116 0.884 15 C -0.200 4.200 16 C 0.060 3.940 17 H 0.093 0.907 18 N -0.363 5.363 19 C -0.467 4.467 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.588 5.588 23 Si 0.917 3.083 24 H -0.221 1.221 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.218 4.218 28 C -0.085 4.085 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.202 0.798 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.297 -15.759 -5.286 30.270 hybrid contribution -1.480 -1.273 0.339 1.981 sum -26.777 -17.033 -4.947 32.118 Atomic orbital electron populations 1.21856 0.90481 1.04525 1.05922 1.21112 0.91039 0.83184 0.75323 1.90838 1.70320 1.31076 1.46756 1.43685 1.05004 1.10033 1.73479 1.17614 0.83052 0.97643 0.97702 1.21056 0.94279 0.99623 0.99479 1.20900 0.93688 0.98851 0.98980 1.21365 1.00082 0.93989 0.96574 1.19866 0.93809 0.97039 1.00669 1.18189 0.82197 0.84426 0.80742 1.90779 1.65533 1.38105 1.46729 1.45599 1.06057 1.31851 1.51652 1.21813 0.92867 0.89779 0.94388 0.88446 1.23874 0.94376 1.00994 1.00784 1.21563 0.85215 0.92928 0.94276 0.90734 1.42414 1.16510 1.64662 1.12727 1.20155 0.99743 1.34204 0.92573 0.91615 1.25806 0.97804 0.97852 1.02840 1.70820 1.38522 1.47282 1.02218 0.83144 0.75420 0.76147 0.73602 1.22112 1.21973 1.21992 1.24300 0.98962 0.98923 0.99662 1.21230 0.93462 0.98075 0.95700 0.90316 0.88135 0.88289 0.75201 0.85260 0.84765 0.85185 0.76483 0.91637 0.89129 0.79757 0.93278 0.89652 0.92218 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.39 36.01 0.37 -0.27 16 2 C 0.51 4.40 7.67 -10.98 -0.08 4.31 16 3 O -0.52 -7.38 14.79 5.55 0.08 -7.30 16 4 N -0.68 -4.61 5.34 -9.89 -0.05 -4.66 16 5 C 0.13 1.30 6.27 -83.74 -0.53 0.77 16 6 C -0.12 -0.92 9.95 -39.31 -0.39 -1.31 16 7 C -0.11 -0.82 10.02 -39.67 -0.40 -1.22 16 8 C -0.10 -0.98 9.54 -39.16 -0.37 -1.36 16 9 C -0.11 -1.43 5.87 -104.99 -0.62 -2.05 16 10 C 0.56 8.77 7.77 -12.32 -0.10 8.67 16 11 O -0.53 -10.43 15.94 5.32 0.08 -10.35 16 12 N -0.70 -9.92 5.22 -53.95 -0.28 -10.20 16 13 C 0.12 1.87 4.32 -67.12 -0.29 1.58 16 14 H 0.10 1.64 7.46 -51.93 -0.39 1.25 16 15 C -0.16 -2.60 7.58 -25.92 -0.20 -2.79 16 16 C 0.17 3.40 4.36 -67.12 -0.29 3.11 16 17 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 18 N -0.72 -18.10 5.40 -52.64 -0.28 -18.39 16 19 C -0.34 -9.45 9.97 -15.06 -0.15 -9.60 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 22 N -0.94 -29.29 13.70 55.49 0.76 -28.53 16 23 Si 1.09 26.14 29.92 -169.99 -5.09 21.05 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 C -0.18 -3.27 7.68 -25.92 -0.20 -3.47 16 28 C -0.06 -0.84 8.20 -38.98 -0.32 -1.16 16 29 H 0.08 0.06 7.92 -51.93 -0.41 -0.35 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.41 1.08 8.66 -40.82 -0.35 0.72 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 1.03 6.40 -52.48 -0.34 0.70 16 36 H 0.40 4.65 6.73 -40.82 -0.27 4.37 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 39 H 0.37 9.49 6.76 -40.82 -0.28 9.22 16 40 H 0.26 7.81 6.77 -40.82 -0.28 7.53 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.15 2.31 6.00 -52.48 -0.32 1.99 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -38.27 364.31 -8.58 -46.85 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.64 Total: 12.24 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.65 Total: -6.19 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.14 Total: -61.79 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.65 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.27 -8.58 -46.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021043011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.725 kcal (2) G-P(sol) polarization free energy of solvation -38.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds