Wall clock time and date at job start Tue Mar 31 2020 11:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21292 * 119.99738 * 2 1 4 4 N 1.34781 * 120.00052 * 180.02562 * 2 1 3 5 5 C 1.39952 * 119.99842 * 185.27614 * 4 2 1 6 6 C 1.38991 * 119.99738 * 213.33877 * 5 4 2 7 7 C 1.38210 * 120.22237 * 180.02562 * 6 5 4 8 8 C 1.38024 * 120.22146 * 359.73947 * 7 6 5 9 9 C 1.39574 * 119.99647 * 0.50940 * 8 7 6 10 10 C 1.47867 * 120.11121 * 179.76600 * 9 8 7 11 11 O 1.21551 * 119.99805 * 179.72309 * 10 9 8 12 12 N 1.34770 * 119.99878 * 359.72694 * 10 9 8 13 13 C 1.46506 * 119.99949 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84792 * 23.80506 * 13 12 10 15 15 C 1.53778 * 113.61536 * 154.99863 * 13 12 10 16 16 C 1.53789 * 87.07907 * 89.20178 * 15 13 12 17 17 H 1.08995 * 113.61033 * 270.79796 * 16 15 13 18 18 N 1.46494 * 113.61220 * 139.98314 * 16 15 13 19 19 C 1.36935 * 120.00257 * 155.00108 * 18 16 15 20 20 H 1.08004 * 119.99567 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00522 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99768 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47388 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46877 * 120.00204 * 23 21 19 26 26 H 1.48500 * 109.47352 * 240.00054 * 23 21 19 27 27 C 1.53777 * 113.69260 * 252.53845 * 13 12 10 28 28 C 1.38598 * 120.00013 * 33.35976 * 5 4 2 29 29 H 1.09002 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46989 * 299.99700 * 1 2 3 31 31 H 1.09003 * 109.47239 * 59.99917 * 1 2 3 32 32 H 0.97000 * 120.00039 * 5.27104 * 4 2 1 33 33 H 1.08000 * 119.88828 * 0.03888 * 6 5 4 34 34 H 1.07998 * 119.88886 * 179.97438 * 7 6 5 35 35 H 1.08004 * 120.00276 * 180.25668 * 8 7 6 36 36 H 0.96998 * 120.00191 * 359.97438 * 12 10 9 37 37 H 1.09003 * 113.61629 * 334.65410 * 15 13 12 38 38 H 1.08994 * 113.69109 * 203.76244 * 15 13 12 39 39 H 0.97004 * 120.00042 * 334.99840 * 18 16 15 40 40 H 0.97002 * 119.99682 * 0.02562 * 22 21 19 41 41 H 1.08990 * 113.61742 * 156.32539 * 27 13 12 42 42 H 1.09008 * 113.61382 * 25.41579 * 27 13 12 43 43 H 1.08003 * 120.11261 * 359.95292 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5760 -1.1698 0.1109 6 6 4.3233 -2.1449 -0.5392 7 6 5.7012 -2.1522 -0.4318 8 6 6.3447 -1.1879 0.3172 9 6 5.6031 -0.2075 0.9782 10 6 6.2896 0.8236 1.7855 11 8 5.6420 1.6795 2.3562 12 7 7.6333 0.8145 1.8887 13 6 8.3136 1.8365 2.6882 14 1 7.6718 2.2709 3.4545 15 6 9.6883 1.3922 3.2152 16 6 10.2807 1.9468 1.9089 17 1 10.3143 1.2166 1.1003 18 7 11.5524 2.6502 2.0934 19 6 12.4387 2.7465 1.0541 20 1 12.2000 2.3042 0.0981 21 6 13.6435 3.4136 1.2288 22 7 13.9337 3.9540 2.3933 23 14 14.8528 3.5443 -0.1889 24 1 14.2933 2.8591 -1.3816 25 1 15.0903 4.9754 -0.5066 26 1 16.1361 2.9028 0.1944 27 6 9.0623 2.8829 1.8459 28 6 4.2124 -0.2003 0.8699 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6990 -2.0055 -0.0781 33 1 3.8255 -2.8994 -1.1303 34 1 6.2765 -2.9126 -0.9389 35 1 7.4219 -1.1945 0.3953 36 1 8.1501 0.1314 1.4336 37 1 9.7888 0.3116 3.3162 38 1 10.0115 1.9323 4.1051 39 1 11.7665 3.0479 2.9519 40 1 13.3058 3.8858 3.1295 41 1 9.2133 3.8313 2.3613 42 1 8.6574 3.0056 0.8413 43 1 3.6335 0.5585 1.3754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021043011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:20 Heat of formation + Delta-G solvation = -36.090080 kcal Electronic energy + Delta-G solvation = -25261.566699 eV Core-core repulsion = 21499.541652 eV Total energy + Delta-G solvation = -3762.025047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84092 -41.17752 -39.80413 -38.87018 -36.17562 -35.94060 -34.33353 -32.26476 -31.92836 -31.35283 -29.44047 -26.68162 -26.43406 -25.31926 -24.01823 -23.84988 -21.94574 -21.55003 -20.52229 -19.67225 -19.24355 -18.08161 -17.53442 -17.37980 -16.92496 -16.89183 -16.53246 -16.16497 -15.98693 -15.59536 -15.35680 -15.30289 -14.96468 -14.59317 -14.47784 -14.01350 -13.68855 -13.47639 -13.39571 -13.28702 -13.09240 -12.89076 -12.68918 -12.66668 -12.43157 -11.89635 -11.86074 -11.67303 -11.59971 -11.17192 -11.10794 -11.02279 -10.87891 -10.26727 -9.96699 -9.26676 -9.11706 -8.39983 -5.34226 -0.26034 0.22330 1.44911 1.58471 1.69976 1.78431 1.81417 1.90283 2.12717 2.71241 2.80666 3.36619 3.51682 3.57255 3.71923 3.76314 3.76422 3.90835 4.06031 4.14237 4.16016 4.19240 4.34911 4.44704 4.49531 4.59418 4.61517 4.76916 4.77781 4.83556 4.99983 5.04153 5.06594 5.10870 5.18780 5.23155 5.31194 5.37150 5.53948 5.61665 5.88288 6.38790 6.41739 6.48862 7.06991 7.08169 7.10333 7.98273 8.10220 9.11846 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.002279 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.352252 B =12280.941564 C =12658.572097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.497 3.503 3 O -0.583 6.583 4 N -0.659 5.659 5 C 0.125 3.875 6 C -0.104 4.104 7 C -0.098 4.098 8 C -0.099 4.099 9 C -0.136 4.136 10 C 0.554 3.446 11 O -0.585 6.585 12 N -0.688 5.688 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.139 4.139 16 C 0.160 3.840 17 H 0.084 0.916 18 N -0.739 5.739 19 C -0.332 4.332 20 H 0.070 0.930 21 C -0.108 4.108 22 N -0.977 5.977 23 Si 1.132 2.868 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.289 1.289 27 C -0.175 4.175 28 C -0.093 4.093 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.434 0.566 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.149 0.851 36 H 0.414 0.586 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.361 0.639 40 H 0.245 0.755 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.716 -21.604 -7.240 35.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.288 3.712 3 O -0.462 6.462 4 N -0.307 5.307 5 C 0.030 3.970 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.140 4.140 10 C 0.343 3.657 11 O -0.466 6.466 12 N -0.340 5.340 13 C 0.026 3.974 14 H 0.107 0.893 15 C -0.179 4.179 16 C 0.051 3.949 17 H 0.102 0.898 18 N -0.378 5.378 19 C -0.464 4.464 20 H 0.088 0.912 21 C -0.299 4.299 22 N -0.625 5.625 23 Si 0.957 3.043 24 H -0.194 1.194 25 H -0.222 1.222 26 H -0.216 1.216 27 C -0.217 4.217 28 C -0.114 4.114 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.275 0.725 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.167 0.833 36 H 0.253 0.747 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.194 0.806 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.378 -19.785 -7.517 33.819 hybrid contribution -1.299 -0.143 0.987 1.637 sum -27.677 -19.928 -6.530 34.724 Atomic orbital electron populations 1.21899 0.86481 1.07251 1.06177 1.22073 0.92955 0.82550 0.73647 1.90820 1.71954 1.33527 1.49882 1.43623 1.04126 1.10763 1.72200 1.17790 0.84492 0.97351 0.97347 1.21551 0.94314 0.98801 0.97762 1.21400 0.94116 0.98467 0.97602 1.21620 1.00929 0.93327 0.95970 1.19696 0.93869 0.97959 1.02444 1.18759 0.82307 0.84402 0.80198 1.90745 1.66564 1.40309 1.48968 1.45443 1.05770 1.31529 1.51231 1.21530 0.92746 0.89435 0.93711 0.89285 1.23673 0.93003 1.02452 0.98761 1.21879 0.83280 0.93119 0.96665 0.89816 1.42612 1.17860 1.65507 1.11815 1.20504 0.99935 1.32627 0.93308 0.91245 1.27227 1.00226 0.98113 1.04295 1.70934 1.38873 1.49677 1.03003 0.82552 0.73702 0.76151 0.71848 1.19435 1.22186 1.21615 1.24184 0.99068 0.98875 0.99607 1.21079 0.93699 0.98983 0.97645 0.86353 0.88105 0.87617 0.72469 0.80944 0.80870 0.83347 0.74708 0.88997 0.89225 0.80646 0.94483 0.91144 0.92956 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.39 71.24 0.74 -0.21 16 2 C 0.50 8.61 7.67 87.66 0.67 9.28 16 3 O -0.58 -17.99 14.79 -3.07 -0.05 -18.04 16 4 N -0.66 -7.90 5.34 -303.59 -1.62 -9.52 16 5 C 0.12 2.25 6.27 38.11 0.24 2.49 16 6 C -0.10 -1.12 9.95 22.44 0.22 -0.90 16 7 C -0.10 -1.08 10.02 22.21 0.22 -0.86 16 8 C -0.10 -1.70 9.54 22.54 0.21 -1.49 16 9 C -0.14 -3.57 5.87 -20.10 -0.12 -3.69 16 10 C 0.55 18.11 7.77 86.79 0.67 18.78 16 11 O -0.58 -24.56 15.94 -3.88 -0.06 -24.62 16 12 N -0.69 -19.26 5.22 -442.89 -2.31 -21.57 16 13 C 0.13 4.25 4.32 45.51 0.20 4.44 16 14 H 0.09 3.09 7.46 -2.39 -0.02 3.07 16 15 C -0.14 -4.36 7.58 31.12 0.24 -4.13 16 16 C 0.16 6.24 4.36 45.52 0.20 6.44 16 17 H 0.08 3.10 8.10 -2.39 -0.02 3.08 16 18 N -0.74 -37.17 5.40 -320.44 -1.73 -38.90 16 19 C -0.33 -18.65 9.97 84.03 0.84 -17.81 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.11 -6.29 5.50 84.86 0.47 -5.82 16 22 N -0.98 -61.71 13.70 21.65 0.30 -61.41 16 23 Si 1.13 52.34 29.92 68.60 2.05 54.40 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 C -0.18 -6.62 7.68 31.12 0.24 -6.38 16 28 C -0.09 -2.55 8.20 22.66 0.19 -2.37 16 29 H 0.12 -0.26 7.92 -2.39 -0.02 -0.28 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.43 0.79 8.66 -92.71 -0.80 -0.01 16 33 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.15 1.88 6.40 -2.91 -0.02 1.86 16 36 H 0.41 8.93 6.73 -92.71 -0.62 8.30 16 37 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.09 2.88 8.12 -2.39 -0.02 2.86 16 39 H 0.36 19.04 6.76 -92.71 -0.63 18.41 16 40 H 0.24 15.39 6.77 -92.71 -0.63 14.76 16 41 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.11 3.80 6.00 -2.91 -0.02 3.79 16 Total: -1.00 -89.63 364.31 0.97 -88.66 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.84 Total: 33.22 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.23 Total: -2.22 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.37 Total: -131.40 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.11 Total: -42.65 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.40 kcal Total: -89.63 0.97 -88.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021043011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.570 kcal (2) G-P(sol) polarization free energy of solvation -89.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds