Wall clock time and date at job start Tue Mar 31 2020 11:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21275 * 120.00242 * 2 1 4 4 N 1.34781 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.39441 * 120.00058 * 185.27467 * 4 2 1 6 6 C 1.39136 * 119.92883 * 213.44667 * 5 4 2 7 7 C 1.37668 * 120.07325 * 179.72186 * 6 5 4 8 8 C 1.39749 * 119.92787 * 0.25612 * 7 6 5 9 9 C 1.47588 * 120.07284 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00270 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99897 * 179.97438 * 9 8 7 12 12 C 1.46508 * 120.00195 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84515 * 25.33881 * 12 11 9 14 14 C 1.53779 * 113.61570 * 156.53273 * 12 11 9 15 15 C 1.53773 * 87.08321 * 139.98308 * 14 12 11 16 16 H 1.08997 * 113.61637 * 89.19353 * 15 14 12 17 17 N 1.46494 * 113.61672 * 220.02181 * 15 14 12 18 18 C 1.36940 * 120.00035 * 204.99795 * 17 15 14 19 19 H 1.08004 * 119.99984 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00317 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99924 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00205 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47229 * 59.99893 * 22 20 18 24 24 H 1.48498 * 109.47032 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46751 * 299.99334 * 22 20 18 26 26 C 1.53780 * 113.61775 * 254.14122 * 12 11 9 27 27 C 1.39756 * 119.85104 * 0.02562 * 8 7 6 28 28 C 1.37668 * 119.92564 * 359.97438 * 27 8 7 29 29 H 1.09005 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47543 * 300.00129 * 1 2 3 31 31 H 1.09001 * 109.47140 * 60.00718 * 1 2 3 32 32 H 0.96999 * 120.00109 * 5.28342 * 4 2 1 33 33 H 1.08005 * 119.95893 * 0.02562 * 6 5 4 34 34 H 1.08005 * 120.03486 * 180.22930 * 7 6 5 35 35 H 0.97003 * 120.00098 * 0.02562 * 11 9 8 36 36 H 1.09001 * 113.61177 * 254.53473 * 14 12 11 37 37 H 1.08997 * 113.61503 * 25.34790 * 14 12 11 38 38 H 0.96994 * 120.00247 * 24.99660 * 17 15 14 39 39 H 0.96991 * 120.00315 * 180.02562 * 21 20 18 40 40 H 1.09005 * 113.61084 * 334.56704 * 26 12 11 41 41 H 1.09004 * 113.61379 * 105.46720 * 26 12 11 42 42 H 1.07994 * 120.03523 * 179.97438 * 27 8 7 43 43 H 1.07999 * 119.96308 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5709 -1.1698 0.1115 6 6 4.3176 -2.1458 -0.5408 7 6 5.6904 -2.1477 -0.4379 8 6 6.3336 -1.1710 0.3272 9 6 7.8051 -1.1704 0.4401 10 8 8.4593 -2.0200 -0.1331 11 7 8.4239 -0.2274 1.1780 12 6 9.8847 -0.2264 1.2897 13 1 10.3743 -0.7056 0.4419 14 6 10.4744 1.1487 1.6450 15 6 11.4538 0.4030 2.5666 16 1 12.3740 0.0964 2.0693 17 7 11.6956 1.0848 3.8405 18 6 12.8614 0.8648 4.5244 19 1 13.6024 0.1882 4.1248 20 6 13.0908 1.5112 5.7312 21 7 12.1876 2.3353 6.2184 22 14 14.6814 1.2115 6.6638 23 1 15.8342 1.6118 5.8176 24 1 14.6815 2.0142 7.9131 25 1 14.7926 -0.2301 7.0023 26 6 10.3986 -0.7145 2.6544 27 6 5.5801 -0.1956 0.9859 28 6 4.2076 -0.1994 0.8788 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6990 -2.0055 -0.0765 33 1 3.8199 -2.8999 -1.1325 34 1 6.2697 -2.9035 -0.9475 35 1 7.9021 0.4506 1.6350 36 1 10.9585 1.6465 0.8047 37 1 9.7793 1.7974 2.1778 38 1 11.0300 1.6922 4.1995 39 1 12.3480 2.7873 7.0615 40 1 9.6830 -0.5767 3.4651 41 1 10.8215 -1.7188 2.6280 42 1 6.0741 0.5604 1.5783 43 1 3.6248 0.5544 1.3873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023013460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:24 Heat of formation + Delta-G solvation = -10.452027 kcal Electronic energy + Delta-G solvation = -24872.088425 eV Core-core repulsion = 21111.175128 eV Total energy + Delta-G solvation = -3760.913297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03194 -40.01401 -38.61780 -37.60721 -35.20311 -34.11368 -32.80785 -31.37065 -31.19915 -29.90756 -29.02038 -25.10442 -24.91693 -23.81506 -23.23273 -22.10570 -20.92979 -20.38735 -19.39587 -18.36290 -17.68764 -17.37925 -17.04417 -16.33715 -15.91387 -15.13493 -14.93531 -14.86363 -14.65063 -14.39568 -14.34159 -13.89491 -13.75272 -13.36898 -13.16092 -13.01177 -12.91594 -12.66679 -12.61705 -12.10414 -11.89202 -11.58965 -11.24453 -10.90769 -10.81000 -10.61798 -10.50429 -10.38924 -10.29875 -10.06915 -9.78070 -9.57856 -9.30002 -8.89739 -8.78303 -8.47044 -6.97361 -5.78947 -3.07792 0.52791 1.10572 2.00863 2.53119 2.85100 3.28994 3.44254 3.48626 3.49644 3.70523 4.14737 4.48067 4.57883 4.59156 4.64739 4.71029 4.82156 4.99963 5.06042 5.07780 5.16176 5.26013 5.26278 5.39565 5.49031 5.67851 5.82976 5.88450 5.89044 5.95516 6.07503 6.09562 6.17043 6.27709 6.33627 6.51790 6.60492 6.63991 6.76910 6.82460 7.08843 7.55831 7.65222 7.69531 8.30560 8.39606 9.50775 10.07623 10.42223 11.43381 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002114 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.341837 B =13241.212768 C =14111.077791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.521 6.521 4 N -0.674 5.674 5 C 0.165 3.835 6 C -0.156 4.156 7 C -0.040 4.040 8 C -0.147 4.147 9 C 0.557 3.443 10 O -0.544 6.544 11 N -0.709 5.709 12 C 0.118 3.882 13 H 0.110 0.890 14 C -0.159 4.159 15 C 0.169 3.831 16 H 0.080 0.920 17 N -0.710 5.710 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.176 4.176 27 C -0.064 4.064 28 C -0.129 4.129 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.413 0.587 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.132 0.868 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.741 -8.065 -14.613 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.395 6.395 4 N -0.320 5.320 5 C 0.070 3.930 6 C -0.176 4.176 7 C -0.059 4.059 8 C -0.151 4.151 9 C 0.345 3.655 10 O -0.423 6.423 11 N -0.358 5.358 12 C 0.013 3.987 13 H 0.128 0.872 14 C -0.199 4.199 15 C 0.056 3.944 16 H 0.098 0.902 17 N -0.348 5.348 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.218 4.218 27 C -0.083 4.083 28 C -0.149 4.149 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.249 0.751 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.234 0.766 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.150 0.850 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.706 -7.885 -14.897 29.908 hybrid contribution -0.028 -0.060 0.921 0.924 sum -24.735 -7.946 -13.976 29.500 Atomic orbital electron populations 1.21868 0.90445 1.04673 1.05927 1.21087 0.91024 0.83096 0.75052 1.90785 1.70443 1.31147 1.47136 1.43665 1.05327 1.10169 1.72847 1.17922 0.82810 0.96754 0.95501 1.20837 0.93836 1.00939 1.02001 1.21061 0.93331 0.96565 0.94954 1.20049 0.93376 0.98698 1.02940 1.18188 0.87071 0.81515 0.78765 1.90758 1.66843 1.37744 1.46978 1.45998 1.08285 1.31049 1.50512 1.22526 0.78199 0.98734 0.99220 0.87246 1.23861 0.99899 0.95658 1.00438 1.21378 0.93987 0.91294 0.87717 0.90186 1.42344 1.20807 1.51879 1.19733 1.19278 0.95361 1.21539 1.01383 0.91020 1.24771 0.98414 0.99545 0.98187 1.69645 1.34702 1.32454 1.21321 0.86244 0.83122 0.77477 0.79203 1.21194 1.21706 1.21218 1.24367 1.00940 1.01047 0.95479 1.21240 0.93494 0.96738 0.96849 1.21038 0.94573 0.99943 0.99372 0.90233 0.88099 0.88244 0.75070 0.85049 0.84147 0.76594 0.91411 0.89963 0.78091 0.93409 0.90211 0.92177 0.85033 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.39 36.00 0.37 -0.07 16 2 C 0.51 3.62 7.67 -10.98 -0.08 3.53 16 3 O -0.52 -6.16 14.79 5.56 0.08 -6.08 16 4 N -0.67 -3.95 5.32 -9.86 -0.05 -4.01 16 5 C 0.16 1.47 6.27 -83.73 -0.53 0.94 16 6 C -0.16 -1.30 9.94 -39.46 -0.39 -1.69 16 7 C -0.04 -0.42 9.58 -39.23 -0.38 -0.80 16 8 C -0.15 -1.79 5.88 -104.95 -0.62 -2.40 16 9 C 0.56 8.24 7.76 -12.45 -0.10 8.14 16 10 O -0.54 -9.78 15.96 5.29 0.08 -9.69 16 11 N -0.71 -9.78 5.31 -54.04 -0.29 -10.07 16 12 C 0.12 1.83 4.21 -67.12 -0.28 1.55 16 13 H 0.11 1.76 7.50 -51.93 -0.39 1.37 16 14 C -0.16 -2.55 7.58 -25.92 -0.20 -2.75 16 15 C 0.17 3.33 4.48 -67.03 -0.30 3.03 16 16 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 17 N -0.71 -17.64 5.40 -52.56 -0.28 -17.92 16 18 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C -0.18 -3.15 7.69 -25.83 -0.20 -3.35 16 27 C -0.06 -0.69 9.53 -39.22 -0.37 -1.06 16 28 C -0.13 -1.35 8.63 -39.46 -0.34 -1.70 16 29 H 0.08 0.00 7.92 -51.93 -0.41 -0.42 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.41 0.87 8.66 -40.82 -0.35 0.52 16 33 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.14 1.47 7.64 -52.48 -0.40 1.07 16 35 H 0.40 4.63 6.73 -40.82 -0.27 4.36 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 38 H 0.39 10.07 7.92 -40.82 -0.32 9.75 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.13 1.20 6.39 -52.49 -0.34 0.87 16 43 H 0.14 1.51 6.42 -52.49 -0.34 1.17 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -35.87 366.08 -8.64 -44.51 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.75 Total: 11.70 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.65 Total: -4.02 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.10 Total: -59.31 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.17 Total: -15.77 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.87 -8.64 -44.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023013460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.058 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds