Wall clock time and date at job start Tue Mar 31 2020 11:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21275 * 120.00242 * 2 1 4 4 N 1.34781 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.39441 * 120.00058 * 185.27467 * 4 2 1 6 6 C 1.39136 * 119.92883 * 213.44667 * 5 4 2 7 7 C 1.37668 * 120.07325 * 179.72186 * 6 5 4 8 8 C 1.39749 * 119.92787 * 0.25612 * 7 6 5 9 9 C 1.47588 * 120.07284 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00270 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99897 * 179.97438 * 9 8 7 12 12 C 1.46508 * 120.00195 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84515 * 25.33881 * 12 11 9 14 14 C 1.53779 * 113.61570 * 156.53273 * 12 11 9 15 15 C 1.53773 * 87.08321 * 139.98308 * 14 12 11 16 16 H 1.08997 * 113.61637 * 89.19353 * 15 14 12 17 17 N 1.46494 * 113.61672 * 220.02181 * 15 14 12 18 18 C 1.36940 * 120.00035 * 204.99795 * 17 15 14 19 19 H 1.08004 * 119.99984 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00317 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99924 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00205 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47229 * 59.99893 * 22 20 18 24 24 H 1.48498 * 109.47032 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46751 * 299.99334 * 22 20 18 26 26 C 1.53780 * 113.61775 * 254.14122 * 12 11 9 27 27 C 1.39756 * 119.85104 * 0.02562 * 8 7 6 28 28 C 1.37668 * 119.92564 * 359.97438 * 27 8 7 29 29 H 1.09005 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47543 * 300.00129 * 1 2 3 31 31 H 1.09001 * 109.47140 * 60.00718 * 1 2 3 32 32 H 0.96999 * 120.00109 * 5.28342 * 4 2 1 33 33 H 1.08005 * 119.95893 * 0.02562 * 6 5 4 34 34 H 1.08005 * 120.03486 * 180.22930 * 7 6 5 35 35 H 0.97003 * 120.00098 * 0.02562 * 11 9 8 36 36 H 1.09001 * 113.61177 * 254.53473 * 14 12 11 37 37 H 1.08997 * 113.61503 * 25.34790 * 14 12 11 38 38 H 0.96994 * 120.00247 * 24.99660 * 17 15 14 39 39 H 0.96991 * 120.00315 * 180.02562 * 21 20 18 40 40 H 1.09005 * 113.61084 * 334.56704 * 26 12 11 41 41 H 1.09004 * 113.61379 * 105.46720 * 26 12 11 42 42 H 1.07994 * 120.03523 * 179.97438 * 27 8 7 43 43 H 1.07999 * 119.96308 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5709 -1.1698 0.1115 6 6 4.3176 -2.1458 -0.5408 7 6 5.6904 -2.1477 -0.4379 8 6 6.3336 -1.1710 0.3272 9 6 7.8051 -1.1704 0.4401 10 8 8.4593 -2.0200 -0.1331 11 7 8.4239 -0.2274 1.1780 12 6 9.8847 -0.2264 1.2897 13 1 10.3743 -0.7056 0.4419 14 6 10.4744 1.1487 1.6450 15 6 11.4538 0.4030 2.5666 16 1 12.3740 0.0964 2.0693 17 7 11.6956 1.0848 3.8405 18 6 12.8614 0.8648 4.5244 19 1 13.6024 0.1882 4.1248 20 6 13.0908 1.5112 5.7312 21 7 12.1876 2.3353 6.2184 22 14 14.6814 1.2115 6.6638 23 1 15.8342 1.6118 5.8176 24 1 14.6815 2.0142 7.9131 25 1 14.7926 -0.2301 7.0023 26 6 10.3986 -0.7145 2.6544 27 6 5.5801 -0.1956 0.9859 28 6 4.2076 -0.1994 0.8788 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6990 -2.0055 -0.0765 33 1 3.8199 -2.8999 -1.1325 34 1 6.2697 -2.9035 -0.9475 35 1 7.9021 0.4506 1.6350 36 1 10.9585 1.6465 0.8047 37 1 9.7793 1.7974 2.1778 38 1 11.0300 1.6922 4.1995 39 1 12.3480 2.7873 7.0615 40 1 9.6830 -0.5767 3.4651 41 1 10.8215 -1.7188 2.6280 42 1 6.0741 0.5604 1.5783 43 1 3.6248 0.5544 1.3873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023013460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:23 Heat of formation + Delta-G solvation = -36.369681 kcal Electronic energy + Delta-G solvation = -24873.212299 eV Core-core repulsion = 21111.175128 eV Total energy + Delta-G solvation = -3762.037171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75966 -41.08658 -39.71707 -38.75349 -35.92700 -35.79556 -34.34684 -32.18901 -32.03064 -31.51807 -29.67531 -26.59775 -26.46049 -25.11692 -24.00745 -23.41566 -21.75053 -21.38664 -20.82986 -19.32222 -18.96600 -18.54656 -17.97694 -17.56446 -16.73174 -16.40116 -16.20047 -15.95083 -15.86423 -15.57546 -15.32896 -14.93237 -14.86340 -14.57141 -14.32581 -13.98696 -13.72176 -13.58079 -13.32318 -13.23152 -13.15288 -13.03410 -12.79483 -12.36519 -12.27445 -12.19437 -12.05945 -11.76569 -11.53821 -11.51507 -11.11061 -10.92227 -10.84030 -10.07481 -10.05012 -9.24458 -8.98819 -7.95037 -5.23357 -0.30723 0.33533 1.39513 1.47946 1.50671 1.56621 1.87550 2.05848 2.16130 2.57361 2.82539 3.36092 3.61956 3.69227 3.73622 3.84640 3.88539 3.90537 3.96191 4.23721 4.25364 4.30452 4.35804 4.45318 4.53354 4.66257 4.70874 4.87315 4.88655 4.92975 5.04960 5.11433 5.11821 5.14369 5.18693 5.30400 5.33685 5.37898 5.50712 5.66044 5.85725 6.27041 6.37939 6.52341 7.07401 7.16596 7.33525 8.09027 8.32698 9.27832 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002114 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.341837 B =13241.212768 C =14111.077791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.660 5.660 5 C 0.169 3.831 6 C -0.144 4.144 7 C -0.046 4.046 8 C -0.169 4.169 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.703 5.703 12 C 0.135 3.865 13 H 0.109 0.891 14 C -0.141 4.141 15 C 0.152 3.848 16 H 0.081 0.919 17 N -0.723 5.723 18 C -0.246 4.246 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.973 3.027 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.280 1.280 26 C -0.170 4.170 27 C -0.064 4.064 28 C -0.145 4.145 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.433 0.567 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.375 0.625 39 H 0.251 0.749 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.141 0.859 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.649 -9.221 -15.794 33.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.295 3.705 3 O -0.452 6.452 4 N -0.307 5.307 5 C 0.073 3.927 6 C -0.164 4.164 7 C -0.066 4.066 8 C -0.173 4.173 9 C 0.346 3.654 10 O -0.463 6.463 11 N -0.353 5.353 12 C 0.030 3.970 13 H 0.127 0.873 14 C -0.180 4.180 15 C 0.041 3.959 16 H 0.099 0.901 17 N -0.360 5.360 18 C -0.378 4.378 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.206 1.206 26 C -0.212 4.212 27 C -0.083 4.083 28 C -0.165 4.165 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.274 0.726 33 H 0.185 0.815 34 H 0.158 0.842 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.208 0.792 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.158 0.842 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.662 -9.095 -16.119 32.456 hybrid contribution 0.439 0.237 1.206 1.305 sum -26.223 -8.858 -14.913 31.440 Atomic orbital electron populations 1.21915 0.86620 1.07124 1.06373 1.21978 0.92770 0.82338 0.73415 1.90768 1.71802 1.33075 1.49583 1.43666 1.04138 1.11162 1.71774 1.18095 0.84398 0.95937 0.94293 1.21106 0.92820 1.01152 1.01370 1.21208 0.94488 0.96162 0.94697 1.19904 0.91748 1.00451 1.05149 1.18589 0.88159 0.80723 0.77879 1.90730 1.67842 1.39144 1.48561 1.45882 1.07578 1.31343 1.50475 1.22202 0.79349 0.97827 0.97632 0.87335 1.23673 0.98718 0.95796 0.99829 1.21687 0.95160 0.92517 0.86541 0.90097 1.42488 1.19892 1.52353 1.21315 1.19678 0.96127 1.20586 1.01444 0.90539 1.25569 1.01668 1.00122 0.99458 1.69797 1.36570 1.33932 1.21594 0.85219 0.79645 0.77321 0.77619 1.20304 1.22202 1.20594 1.24197 1.00160 1.00083 0.96760 1.21306 0.93730 0.96600 0.96696 1.21097 0.94482 1.00613 1.00291 0.86835 0.87642 0.87600 0.72596 0.81451 0.84244 0.75271 0.89758 0.89520 0.79236 0.94008 0.91191 0.92629 0.84166 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.37 10.39 71.24 0.74 0.37 16 2 C 0.50 6.23 7.67 87.66 0.67 6.90 16 3 O -0.57 -13.36 14.79 -3.01 -0.04 -13.40 16 4 N -0.66 -6.00 5.32 -303.49 -1.61 -7.62 16 5 C 0.17 2.69 6.27 38.36 0.24 2.93 16 6 C -0.14 -2.05 9.94 22.35 0.22 -1.83 16 7 C -0.05 -0.93 9.58 22.50 0.22 -0.71 16 8 C -0.17 -4.04 5.88 -20.08 -0.12 -4.16 16 9 C 0.56 16.40 7.76 86.71 0.67 17.08 16 10 O -0.58 -20.95 15.96 -4.00 -0.06 -21.01 16 11 N -0.70 -19.07 5.31 -443.13 -2.35 -21.43 16 12 C 0.14 4.12 4.21 45.52 0.19 4.31 16 13 H 0.11 3.42 7.50 -2.39 -0.02 3.40 16 14 C -0.14 -4.39 7.58 31.12 0.24 -4.15 16 15 C 0.15 5.95 4.48 45.57 0.20 6.15 16 16 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 17 N -0.72 -36.27 5.40 -320.19 -1.73 -38.00 16 18 C -0.25 -13.73 9.97 84.03 0.84 -12.90 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 22 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 C -0.17 -6.09 7.69 31.18 0.24 -5.85 16 27 C -0.06 -1.36 9.53 22.50 0.21 -1.14 16 28 C -0.14 -2.95 8.63 22.35 0.19 -2.76 16 29 H 0.11 -0.51 7.92 -2.38 -0.02 -0.53 16 30 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.43 0.20 8.66 -92.71 -0.80 -0.60 16 33 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.14 2.81 7.64 -2.91 -0.02 2.79 16 35 H 0.41 9.29 6.73 -92.71 -0.62 8.66 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 38 H 0.38 20.00 7.92 -92.71 -0.73 19.27 16 39 H 0.25 14.94 8.31 -92.72 -0.77 14.17 16 40 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 41 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.14 2.54 6.39 -2.91 -0.02 2.52 16 43 H 0.13 2.88 6.42 -2.91 -0.02 2.87 16 Total: -1.00 -79.15 366.08 0.64 -78.50 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -1.09 Total: 33.12 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.23 Total: 0.34 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -5.42 Total: -125.96 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.11 Total: -34.42 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -79.15 0.64 -78.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023013460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.135 kcal (2) G-P(sol) polarization free energy of solvation -79.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds