Wall clock time and date at job start Tue Mar 31 2020 11:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36935 * 119.99608 * 2 1 4 4 H 1.07999 * 119.99660 * 143.33275 * 3 2 1 5 5 C 1.38808 * 120.00415 * 323.33395 * 3 2 1 6 6 N 1.31621 * 120.00078 * 156.34527 * 5 3 2 7 7 Si 1.86801 * 120.00019 * 336.34206 * 5 3 2 8 8 H 1.48506 * 109.47003 * 95.27459 * 7 5 3 9 9 H 1.48498 * 109.47343 * 215.27637 * 7 5 3 10 10 H 1.48502 * 109.47146 * 335.27808 * 7 5 3 11 11 C 1.46503 * 119.99894 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49271 * 179.97438 * 11 2 1 13 13 C 1.53037 * 109.49525 * 59.83752 * 11 2 1 14 14 C 1.53050 * 109.53453 * 178.68428 * 13 11 2 15 15 C 1.52756 * 109.38187 * 61.23510 * 14 13 11 16 16 N 1.46918 * 109.01067 * 305.58811 * 15 14 13 17 17 C 1.34774 * 120.63023 * 233.58293 * 16 15 14 18 18 O 1.21731 * 120.00188 * 178.98589 * 17 16 15 19 19 C 1.46492 * 120.00176 * 358.99262 * 17 16 15 20 20 C 1.37777 * 125.86010 * 155.12617 * 19 17 16 21 21 C 1.39936 * 107.68644 * 180.28154 * 20 19 17 22 22 O 1.35124 * 145.13477 * 180.77429 * 21 20 19 23 23 C 1.34380 * 109.62340 * 179.23410 * 22 21 20 24 24 C 1.34474 * 109.44663 * 359.72854 * 23 22 21 25 25 C 1.39136 * 107.40486 * 359.57086 * 21 20 19 26 26 N 1.37114 * 108.10732 * 0.43082 * 25 21 20 27 27 H 0.97000 * 125.74006 * 179.77011 * 26 25 21 28 28 C 1.46923 * 118.74057 * 53.31301 * 16 15 14 29 29 H 1.09003 * 109.46757 * 264.93018 * 1 2 3 30 30 H 1.08999 * 109.47210 * 24.93054 * 1 2 3 31 31 H 1.08999 * 109.46791 * 144.93344 * 1 2 3 32 32 H 0.97002 * 119.99701 * 180.02562 * 6 5 3 33 33 H 1.09007 * 109.45974 * 298.69697 * 13 11 2 34 34 H 1.08999 * 109.46796 * 58.65986 * 13 11 2 35 35 H 1.09001 * 109.49228 * 181.31684 * 14 13 11 36 36 H 1.08997 * 109.49309 * 301.37417 * 14 13 11 37 37 H 1.09002 * 109.50644 * 185.70504 * 15 14 13 38 38 H 1.09000 * 109.43137 * 65.42994 * 15 14 13 39 39 H 1.08002 * 126.15791 * 0.02562 * 20 19 17 40 40 H 1.07999 * 125.27548 * 179.72243 * 23 22 21 41 41 H 1.07997 * 126.41177 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.58746 * 66.42551 * 28 16 15 43 43 H 1.09001 * 109.59223 * 186.85206 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0694 1.2785 0.5586 5 6 1.6616 2.2691 -0.7178 6 7 2.0085 3.4929 -0.3795 7 14 0.5127 1.9900 -2.1640 8 1 -0.8953 2.1170 -1.7093 9 1 0.7863 3.0017 -3.2160 10 1 0.7336 0.6294 -2.7163 11 6 2.1976 -1.2688 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8252 -2.0729 -1.2482 14 6 2.6145 -3.3841 -1.2665 15 6 2.2542 -4.2099 -0.0330 16 7 2.4684 -3.3930 1.1692 17 6 3.2420 -3.8434 2.1767 18 8 3.4266 -3.1493 3.1595 19 6 3.8608 -5.1683 2.0890 20 6 5.0037 -5.5704 2.7452 21 6 5.2555 -6.8990 2.3852 22 8 6.0774 -7.9576 2.5575 23 6 5.6358 -8.9953 1.8267 24 6 4.5180 -8.6373 1.1704 25 6 4.2452 -7.2925 1.5132 26 7 3.3987 -6.2289 1.3339 27 1 2.6081 -6.2225 0.7719 28 6 1.8280 -2.0731 1.2497 29 1 -0.3633 -0.0908 1.0237 30 1 -0.3633 0.9319 -0.4332 31 1 -0.3633 -0.8411 -0.5904 32 1 1.6671 4.2499 -0.8809 33 1 0.7575 -2.2921 -1.2337 34 1 2.0645 -1.4926 -2.1393 35 1 2.3662 -3.9456 -2.1671 36 1 3.6824 -3.1659 -1.2566 37 1 2.8877 -5.0959 0.0097 38 1 1.2076 -4.5090 -0.0899 39 1 5.6003 -4.9672 3.4135 40 1 6.1059 -9.9662 1.7746 41 1 3.9372 -9.2603 0.5064 42 1 0.7459 -2.1943 1.2995 43 1 2.1804 -1.5495 2.1384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027433046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:10 Heat of formation + Delta-G solvation = 83.782354 kcal Electronic energy + Delta-G solvation = -26779.598475 eV Core-core repulsion = 23022.771487 eV Total energy + Delta-G solvation = -3756.826988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.18217 -40.68603 -38.94636 -37.59040 -35.42338 -32.65400 -32.48233 -31.69985 -31.04665 -29.71531 -28.41119 -26.21548 -25.64472 -24.15312 -22.86031 -22.09389 -21.47630 -20.94004 -19.92204 -19.11841 -17.93781 -17.45214 -16.84923 -16.49787 -16.09922 -15.68579 -15.44413 -15.20336 -14.62541 -14.34364 -14.12201 -13.84572 -13.67392 -13.58662 -13.38418 -13.05875 -12.85724 -12.65615 -12.54355 -12.30877 -12.20962 -11.96473 -11.35678 -11.11913 -10.78648 -10.57112 -10.44750 -10.31836 -10.22059 -10.05609 -10.00545 -9.60777 -8.82207 -8.79345 -8.46010 -8.06611 -6.89951 -6.03198 -3.44170 0.83187 2.02612 2.27118 2.44479 2.59155 2.97645 3.26688 3.27598 3.42890 3.47067 4.24441 4.35314 4.47885 4.56450 4.68047 4.89322 4.99208 5.03750 5.04622 5.20906 5.24056 5.26351 5.33505 5.51223 5.59153 5.65792 5.73907 5.87847 5.89699 6.01061 6.07657 6.14461 6.23981 6.26247 6.37227 6.46908 6.47688 6.67831 6.76879 6.81114 6.90942 7.03870 7.34265 7.98851 8.07626 8.34521 8.92824 9.66151 10.04504 11.12234 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.002998 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.944260 B = 9337.690554 C = 9758.868143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.600 5.600 3 C -0.272 4.272 4 H 0.081 0.919 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.880 3.120 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.269 1.269 11 C 0.166 3.834 12 H 0.077 0.923 13 C -0.139 4.139 14 C -0.130 4.130 15 C 0.083 3.917 16 N -0.600 5.600 17 C 0.585 3.415 18 O -0.518 6.518 19 C 0.019 3.981 20 C -0.085 4.085 21 C -0.037 4.037 22 O -0.168 6.168 23 C 0.008 3.992 24 C -0.202 4.202 25 C 0.001 3.999 26 N -0.535 5.535 27 H 0.425 0.575 28 C 0.100 3.900 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.161 0.839 40 H 0.211 0.789 41 H 0.153 0.847 42 H 0.065 0.935 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -26.257 -0.363 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.323 5.323 3 C -0.400 4.400 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.710 3.290 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.194 1.194 11 C 0.058 3.942 12 H 0.095 0.905 13 C -0.178 4.178 14 C -0.169 4.169 15 C -0.040 4.040 16 N -0.333 5.333 17 C 0.372 3.628 18 O -0.393 6.393 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.088 4.088 22 O -0.066 6.066 23 C -0.060 4.060 24 C -0.223 4.223 25 C -0.112 4.112 26 N -0.147 5.147 27 H 0.270 0.730 28 C -0.023 4.023 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.178 0.822 40 H 0.228 0.772 41 H 0.170 0.830 42 H 0.083 0.917 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.285 -25.596 0.248 25.699 hybrid contribution -1.282 -0.245 -1.491 1.981 sum 1.003 -25.840 -1.243 25.890 Atomic orbital electron populations 1.21357 0.84870 0.99379 0.98133 1.44031 1.00491 1.01437 1.86354 1.18807 1.09103 0.86503 1.25569 0.90172 1.25459 0.98106 0.95129 0.97797 1.69893 1.46475 0.97755 1.39592 0.86905 0.80124 0.77711 0.84212 1.21519 1.23017 1.19398 1.20748 0.97315 0.85736 0.90402 0.90495 1.22163 0.99406 0.95051 1.01206 1.21816 1.01642 0.97215 0.96205 1.22230 1.01413 0.94585 0.85820 1.48076 1.48715 1.19465 1.17085 1.16906 0.78629 0.83982 0.83275 1.90900 1.60451 1.56870 1.31064 1.20326 0.98910 0.89321 1.00732 1.19898 0.97408 0.90158 1.03759 1.19294 0.93307 0.91425 1.04823 1.84026 1.46412 1.18222 1.57911 1.24037 0.95734 0.92084 0.94111 1.20542 1.01155 0.92500 1.08115 1.19116 0.95262 0.92007 1.04792 1.42202 1.24299 1.08575 1.39611 0.72960 1.22421 0.96684 0.80773 1.02416 0.96539 0.93159 0.95349 0.92637 0.92396 0.91150 0.90995 0.91189 0.89646 0.90971 0.82186 0.77243 0.82972 0.91681 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.25 8.36 59.85 0.50 2.75 16 2 N -0.60 -13.80 2.38 -173.34 -0.41 -14.21 16 3 C -0.27 -7.50 9.82 -15.06 -0.15 -7.65 16 4 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 5 C 0.04 1.02 5.25 -17.43 -0.09 0.93 16 6 N -0.90 -27.25 13.97 55.49 0.78 -26.48 16 7 Si 0.88 21.77 25.11 -169.99 -4.27 17.50 16 8 H -0.29 -6.92 6.65 56.52 0.38 -6.54 16 9 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.17 3.14 2.75 -67.81 -0.19 2.96 16 12 H 0.08 1.59 7.89 -51.93 -0.41 1.18 16 13 C -0.14 -2.17 5.10 -26.69 -0.14 -2.31 16 14 C -0.13 -1.52 6.07 -26.83 -0.16 -1.68 16 15 C 0.08 0.87 5.49 -3.94 -0.02 0.85 16 16 N -0.60 -8.49 2.98 -174.65 -0.52 -9.01 16 17 C 0.59 9.04 7.63 -12.94 -0.10 8.94 16 18 O -0.52 -9.90 16.37 5.16 0.08 -9.82 16 19 C 0.02 0.25 6.45 -81.86 -0.53 -0.28 16 20 C -0.08 -1.11 10.67 -39.11 -0.42 -1.53 16 21 C -0.04 -0.45 8.20 -38.61 -0.32 -0.77 16 22 O -0.17 -1.84 10.68 3.19 0.03 -1.81 16 23 C 0.01 0.06 12.02 29.40 0.35 0.41 16 24 C -0.20 -1.59 10.89 -39.70 -0.43 -2.03 16 25 C 0.00 0.01 8.11 -83.95 -0.68 -0.67 16 26 N -0.54 -5.49 4.87 -7.04 -0.03 -5.52 16 27 H 0.42 3.26 6.11 -40.82 -0.25 3.01 16 28 C 0.10 1.69 5.80 -3.71 -0.02 1.67 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 1.16 3.51 -51.93 -0.18 0.98 16 31 H 0.03 0.51 6.47 -51.93 -0.34 0.18 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.06 0.86 6.75 -51.92 -0.35 0.51 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.75 3.68 -51.95 -0.19 0.56 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 43 H 0.10 1.92 7.00 -51.93 -0.36 1.56 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -33.89 340.01 -7.04 -40.94 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.44 Total: 1.70 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.39 Total: 1.60 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.19 Total: -55.22 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.12 Total: -11.63 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.27 Total: 17.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.89 -7.04 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027433046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.718 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds