Wall clock time and date at job start Tue Mar 31 2020 11:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36935 * 119.99608 * 2 1 4 4 H 1.07999 * 119.99660 * 143.33275 * 3 2 1 5 5 C 1.38808 * 120.00415 * 323.33395 * 3 2 1 6 6 N 1.31621 * 120.00078 * 156.34527 * 5 3 2 7 7 Si 1.86801 * 120.00019 * 336.34206 * 5 3 2 8 8 H 1.48506 * 109.47003 * 95.27459 * 7 5 3 9 9 H 1.48498 * 109.47343 * 215.27637 * 7 5 3 10 10 H 1.48502 * 109.47146 * 335.27808 * 7 5 3 11 11 C 1.46503 * 119.99894 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49271 * 179.97438 * 11 2 1 13 13 C 1.53037 * 109.49525 * 59.83752 * 11 2 1 14 14 C 1.53050 * 109.53453 * 178.68428 * 13 11 2 15 15 C 1.52756 * 109.38187 * 61.23510 * 14 13 11 16 16 N 1.46918 * 109.01067 * 305.58811 * 15 14 13 17 17 C 1.34774 * 120.63023 * 233.58293 * 16 15 14 18 18 O 1.21731 * 120.00188 * 178.98589 * 17 16 15 19 19 C 1.46492 * 120.00176 * 358.99262 * 17 16 15 20 20 C 1.37777 * 125.86010 * 155.12617 * 19 17 16 21 21 C 1.39936 * 107.68644 * 180.28154 * 20 19 17 22 22 O 1.35124 * 145.13477 * 180.77429 * 21 20 19 23 23 C 1.34380 * 109.62340 * 179.23410 * 22 21 20 24 24 C 1.34474 * 109.44663 * 359.72854 * 23 22 21 25 25 C 1.39136 * 107.40486 * 359.57086 * 21 20 19 26 26 N 1.37114 * 108.10732 * 0.43082 * 25 21 20 27 27 H 0.97000 * 125.74006 * 179.77011 * 26 25 21 28 28 C 1.46923 * 118.74057 * 53.31301 * 16 15 14 29 29 H 1.09003 * 109.46757 * 264.93018 * 1 2 3 30 30 H 1.08999 * 109.47210 * 24.93054 * 1 2 3 31 31 H 1.08999 * 109.46791 * 144.93344 * 1 2 3 32 32 H 0.97002 * 119.99701 * 180.02562 * 6 5 3 33 33 H 1.09007 * 109.45974 * 298.69697 * 13 11 2 34 34 H 1.08999 * 109.46796 * 58.65986 * 13 11 2 35 35 H 1.09001 * 109.49228 * 181.31684 * 14 13 11 36 36 H 1.08997 * 109.49309 * 301.37417 * 14 13 11 37 37 H 1.09002 * 109.50644 * 185.70504 * 15 14 13 38 38 H 1.09000 * 109.43137 * 65.42994 * 15 14 13 39 39 H 1.08002 * 126.15791 * 0.02562 * 20 19 17 40 40 H 1.07999 * 125.27548 * 179.72243 * 23 22 21 41 41 H 1.07997 * 126.41177 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.58746 * 66.42551 * 28 16 15 43 43 H 1.09001 * 109.59223 * 186.85206 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0694 1.2785 0.5586 5 6 1.6616 2.2691 -0.7178 6 7 2.0085 3.4929 -0.3795 7 14 0.5127 1.9900 -2.1640 8 1 -0.8953 2.1170 -1.7093 9 1 0.7863 3.0017 -3.2160 10 1 0.7336 0.6294 -2.7163 11 6 2.1976 -1.2688 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8252 -2.0729 -1.2482 14 6 2.6145 -3.3841 -1.2665 15 6 2.2542 -4.2099 -0.0330 16 7 2.4684 -3.3930 1.1692 17 6 3.2420 -3.8434 2.1767 18 8 3.4266 -3.1493 3.1595 19 6 3.8608 -5.1683 2.0890 20 6 5.0037 -5.5704 2.7452 21 6 5.2555 -6.8990 2.3852 22 8 6.0774 -7.9576 2.5575 23 6 5.6358 -8.9953 1.8267 24 6 4.5180 -8.6373 1.1704 25 6 4.2452 -7.2925 1.5132 26 7 3.3987 -6.2289 1.3339 27 1 2.6081 -6.2225 0.7719 28 6 1.8280 -2.0731 1.2497 29 1 -0.3633 -0.0908 1.0237 30 1 -0.3633 0.9319 -0.4332 31 1 -0.3633 -0.8411 -0.5904 32 1 1.6671 4.2499 -0.8809 33 1 0.7575 -2.2921 -1.2337 34 1 2.0645 -1.4926 -2.1393 35 1 2.3662 -3.9456 -2.1671 36 1 3.6824 -3.1659 -1.2566 37 1 2.8877 -5.0959 0.0097 38 1 1.2076 -4.5090 -0.0899 39 1 5.6003 -4.9672 3.4135 40 1 6.1059 -9.9662 1.7746 41 1 3.9372 -9.2603 0.5064 42 1 0.7459 -2.1943 1.2995 43 1 2.1804 -1.5495 2.1384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027433046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:09 Heat of formation + Delta-G solvation = 60.114925 kcal Electronic energy + Delta-G solvation = -26780.624771 eV Core-core repulsion = 23022.771487 eV Total energy + Delta-G solvation = -3757.853285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.96464 -41.74347 -39.98616 -38.95082 -36.99382 -34.20360 -33.32024 -33.20241 -32.11641 -31.01789 -29.37372 -28.06516 -26.74374 -25.66927 -23.92786 -23.30833 -22.46372 -21.74956 -21.13691 -20.32847 -19.02695 -18.70208 -18.41326 -17.48994 -17.32490 -16.99946 -16.60147 -16.49998 -15.72663 -15.67095 -15.37015 -15.24985 -14.72756 -14.59599 -14.50317 -14.36501 -14.15047 -14.02670 -13.97590 -13.68309 -13.63673 -12.94118 -12.77353 -12.62263 -12.22599 -12.09646 -11.92166 -11.88441 -11.72276 -11.38945 -11.33166 -11.06264 -10.69934 -9.91365 -9.63311 -8.90407 -8.77972 -8.23135 -5.61500 -0.05550 1.16129 1.30923 1.41525 1.48675 1.53669 1.56329 1.70243 2.02250 2.26012 2.40851 3.02050 3.26531 3.35497 3.65091 3.81312 3.91328 3.93448 3.96621 4.08626 4.26583 4.31244 4.40411 4.48926 4.51458 4.59657 4.69900 4.73149 4.75974 4.78573 4.83236 4.95145 4.99431 5.02024 5.08093 5.28565 5.36409 5.42753 5.44647 5.56755 5.88885 6.13109 6.13545 6.18951 6.33617 6.87248 6.94996 7.58351 7.97970 8.97052 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.002998 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.944260 B = 9337.690554 C = 9758.868143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.614 5.614 3 C -0.267 4.267 4 H 0.030 0.970 5 C -0.024 4.024 6 N -0.951 5.951 7 Si 0.956 3.044 8 H -0.272 1.272 9 H -0.311 1.311 10 H -0.248 1.248 11 C 0.165 3.835 12 H 0.042 0.958 13 C -0.130 4.130 14 C -0.123 4.123 15 C 0.081 3.919 16 N -0.597 5.597 17 C 0.584 3.416 18 O -0.570 6.570 19 C 0.002 3.998 20 C -0.097 4.097 21 C -0.075 4.075 22 O -0.187 6.187 23 C 0.026 3.974 24 C -0.210 4.210 25 C 0.013 3.987 26 N -0.519 5.519 27 H 0.438 0.562 28 C 0.114 3.886 29 H 0.024 0.976 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.264 0.736 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.259 0.741 41 H 0.187 0.813 42 H 0.084 0.916 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -31.343 -2.987 31.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.338 5.338 3 C -0.396 4.396 4 H 0.047 0.953 5 C -0.221 4.221 6 N -0.594 5.594 7 Si 0.783 3.217 8 H -0.199 1.199 9 H -0.240 1.240 10 H -0.171 1.171 11 C 0.058 3.942 12 H 0.060 0.940 13 C -0.169 4.169 14 C -0.161 4.161 15 C -0.041 4.041 16 N -0.329 5.329 17 C 0.373 3.627 18 O -0.449 6.449 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.126 4.126 22 O -0.086 6.086 23 C -0.040 4.040 24 C -0.231 4.231 25 C -0.100 4.100 26 N -0.132 5.132 27 H 0.287 0.713 28 C -0.011 4.011 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.169 0.831 40 H 0.275 0.725 41 H 0.205 0.795 42 H 0.102 0.898 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.325 -30.753 -2.414 30.849 hybrid contribution -0.522 1.190 -0.555 1.413 sum -0.197 -29.563 -2.969 29.713 Atomic orbital electron populations 1.21452 0.83190 1.00004 0.99290 1.44075 1.01583 1.01241 1.86872 1.18611 1.07781 0.88806 1.24429 0.95254 1.26167 1.00960 0.94452 1.00476 1.70044 1.49373 0.98879 1.41137 0.85697 0.78342 0.78160 0.79504 1.19881 1.23966 1.17104 1.20801 0.95101 0.84968 0.93371 0.93979 1.22011 1.01197 0.96074 0.97638 1.21794 1.00146 0.95643 0.98528 1.22566 1.04094 0.94218 0.83207 1.48097 1.47961 1.18608 1.18209 1.17231 0.78117 0.84599 0.82762 1.90866 1.62287 1.58572 1.33198 1.19724 0.99492 0.88990 1.02817 1.19979 0.97692 0.91171 1.03655 1.19334 0.94993 0.91692 1.06596 1.84033 1.46826 1.18716 1.59013 1.25139 0.95063 0.92366 0.91475 1.21017 1.01802 0.91241 1.09046 1.19608 0.94096 0.92893 1.03443 1.42012 1.24532 1.07633 1.39013 0.71315 1.22006 0.97600 0.81866 0.99590 0.95763 0.95029 0.91292 0.92694 0.90312 0.92977 0.86907 0.92658 0.87677 0.87354 0.83108 0.72524 0.79526 0.89754 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.19 8.36 127.77 1.07 5.26 16 2 N -0.61 -28.53 2.38 -702.33 -1.67 -30.21 16 3 C -0.27 -15.51 9.82 84.03 0.83 -14.68 16 4 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 5 C -0.02 -1.42 5.25 84.86 0.45 -0.98 16 6 N -0.95 -60.56 13.97 21.65 0.30 -60.25 16 7 Si 0.96 45.35 25.11 68.60 1.72 47.07 16 8 H -0.27 -12.17 6.65 99.48 0.66 -11.50 16 9 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 10 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 11 C 0.16 6.29 2.75 45.07 0.12 6.41 16 12 H 0.04 1.86 7.89 -2.39 -0.02 1.84 16 13 C -0.13 -3.70 5.10 30.62 0.16 -3.55 16 14 C -0.12 -2.41 6.07 30.53 0.19 -2.23 16 15 C 0.08 1.38 5.49 86.22 0.47 1.85 16 16 N -0.60 -16.45 2.98 -824.67 -2.46 -18.90 16 17 C 0.58 18.56 7.63 86.39 0.66 19.22 16 18 O -0.57 -23.49 16.37 -4.45 -0.07 -23.56 16 19 C 0.00 0.05 6.45 40.19 0.26 0.31 16 20 C -0.10 -2.63 10.67 22.57 0.24 -2.39 16 21 C -0.08 -1.79 8.20 22.90 0.19 -1.61 16 22 O -0.19 -3.76 10.68 -11.50 -0.12 -3.88 16 23 C 0.03 0.27 12.02 66.96 0.80 1.08 16 24 C -0.21 -2.36 10.89 22.20 0.24 -2.12 16 25 C 0.01 0.25 8.11 39.32 0.32 0.57 16 26 N -0.52 -9.32 4.87 -176.20 -0.86 -10.18 16 27 H 0.44 4.96 6.11 -92.71 -0.57 4.39 16 28 C 0.11 3.87 5.80 86.36 0.50 4.37 16 29 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.03 1.39 3.51 -2.39 -0.01 1.38 16 31 H 0.07 2.20 6.47 -2.39 -0.02 2.19 16 32 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.08 1.95 6.75 -2.38 -0.02 1.93 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.42 3.68 -2.42 -0.01 1.42 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 40 H 0.26 -0.20 8.06 -2.91 -0.02 -0.23 16 41 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 42 H 0.08 2.56 7.51 -2.39 -0.02 2.54 16 43 H 0.06 2.45 7.00 -2.39 -0.02 2.43 16 Total: -1.00 -81.97 340.01 3.78 -78.19 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.44 Total: 10.21 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 6.49 Total: 11.51 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -4.69 Total: -119.54 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.20 Total: -27.44 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.72 Total: 47.07 kcal Total: -81.97 3.78 -78.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027433046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.309 kcal (2) G-P(sol) polarization free energy of solvation -81.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds