Wall clock time and date at job start Tue Mar 31 2020 11:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99962 * 2 1 4 4 H 1.07998 * 120.00353 * 204.21661 * 3 2 1 5 5 C 1.38817 * 119.99826 * 24.22519 * 3 2 1 6 6 N 1.31613 * 120.00145 * 15.40035 * 5 3 2 7 7 Si 1.86798 * 119.99842 * 195.40259 * 5 3 2 8 8 H 1.48501 * 109.47427 * 59.99674 * 7 5 3 9 9 H 1.48497 * 109.47424 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47184 * 300.00092 * 7 5 3 11 11 C 1.46498 * 119.99606 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.52171 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.50099 * 300.15782 * 11 2 1 14 14 C 1.53041 * 109.54092 * 181.32139 * 13 11 2 15 15 C 1.53629 * 109.23859 * 298.51124 * 14 13 11 16 16 N 1.46928 * 108.54347 * 54.85451 * 15 14 13 17 17 C 1.34779 * 120.62653 * 126.36835 * 16 15 14 18 18 O 1.21724 * 119.99549 * 188.47584 * 17 16 15 19 19 C 1.46498 * 120.00165 * 8.47095 * 17 16 15 20 20 C 1.37778 * 125.85582 * 209.77595 * 19 17 16 21 21 C 1.39939 * 107.68248 * 180.02562 * 20 19 17 22 22 O 1.35121 * 145.13651 * 179.97438 * 21 20 19 23 23 C 1.34381 * 109.62238 * 180.02562 * 22 21 20 24 24 C 1.34461 * 109.44937 * 359.97438 * 23 22 21 25 25 C 1.39131 * 107.40724 * 0.02562 * 21 20 19 26 26 N 1.37112 * 108.10873 * 359.97438 * 25 21 20 27 27 H 0.97004 * 125.74276 * 180.02562 * 26 25 21 28 28 C 1.46917 * 118.73908 * 306.09539 * 16 15 14 29 29 H 1.09001 * 109.46686 * 273.51133 * 1 2 3 30 30 H 1.08996 * 109.47081 * 33.50979 * 1 2 3 31 31 H 1.08997 * 109.47221 * 153.51589 * 1 2 3 32 32 H 0.96997 * 119.99974 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.45702 * 301.34184 * 13 11 2 34 34 H 1.08996 * 109.45673 * 61.30790 * 13 11 2 35 35 H 1.09004 * 109.49794 * 58.58380 * 14 13 11 36 36 H 1.08991 * 109.49597 * 178.68084 * 14 13 11 37 37 H 1.08994 * 109.73770 * 295.12018 * 15 14 13 38 38 H 1.08996 * 109.66097 * 174.55155 * 15 14 13 39 39 H 1.07994 * 126.16026 * 0.02562 * 20 19 17 40 40 H 1.07998 * 125.27707 * 179.97438 * 23 22 21 41 41 H 1.07993 * 126.41996 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.58465 * 173.64609 * 28 16 15 43 43 H 1.09007 * 109.58700 * 293.92960 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1584 1.2271 -0.3836 5 6 1.5473 2.3351 0.4933 6 7 0.4595 2.2442 1.2286 7 14 2.2805 4.0107 0.1134 8 1 2.3023 4.2197 -1.3567 9 1 1.4563 5.0680 0.7521 10 1 3.6663 4.0763 0.6432 11 6 2.1975 -1.2688 -0.0006 12 1 3.2694 -1.0706 0.0000 13 6 1.8252 -2.0741 1.2464 14 6 2.6145 -3.3851 1.2636 15 6 2.2450 -4.2147 0.0245 16 7 2.4681 -3.3920 -1.1723 17 6 3.2409 -3.8421 -2.1806 18 8 3.5447 -3.0968 -3.0938 19 6 3.7155 -5.2281 -2.1774 20 6 4.8911 -5.6798 -2.7360 21 6 4.9642 -7.0597 -2.5146 22 8 5.7009 -8.1759 -2.7071 23 6 5.0718 -9.2312 -2.1626 24 6 3.9170 -8.8257 -1.6058 25 6 3.8188 -7.4306 -1.8173 26 7 3.0605 -6.3064 -1.6145 27 1 2.2078 -6.2736 -1.1533 28 6 1.8278 -2.0721 -1.2515 29 1 -0.3633 0.0629 1.0258 30 1 -0.3633 0.8568 -0.5673 31 1 -0.3633 -0.9198 -0.4583 32 1 0.0388 3.0472 1.5736 33 1 2.0647 -1.4943 2.1379 34 1 0.7576 -2.2933 1.2317 35 1 3.6825 -3.1670 1.2531 36 1 2.3664 -3.9474 2.1637 37 1 1.1963 -4.5070 0.0766 38 1 2.8727 -5.1046 -0.0216 39 1 5.6242 -5.0776 -3.2519 40 1 5.4370 -10.2475 -2.1710 41 1 3.1987 -9.4485 -1.0936 42 1 2.1802 -1.5478 -2.1398 43 1 0.7458 -2.1934 -1.3039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027433047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:13 Heat of formation + Delta-G solvation = 67.634543 kcal Electronic energy + Delta-G solvation = -26654.592597 eV Core-core repulsion = 22897.065388 eV Total energy + Delta-G solvation = -3757.527210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.14382 -40.55933 -38.89248 -37.42420 -35.17640 -32.62807 -32.40966 -31.42433 -30.84075 -29.27210 -28.20969 -26.03466 -25.50724 -23.90639 -22.81730 -21.94564 -21.45844 -20.91964 -19.79739 -18.95300 -17.95702 -17.37529 -16.74863 -16.47057 -15.99396 -15.69794 -15.28218 -14.79410 -14.52548 -14.24234 -13.85453 -13.84060 -13.64779 -13.40641 -13.28546 -13.02633 -12.73570 -12.72023 -12.35530 -12.03089 -11.93681 -11.14251 -10.97355 -10.90716 -10.68450 -10.48013 -10.37111 -10.31371 -10.19228 -10.04950 -9.92674 -9.74517 -8.78230 -8.69167 -8.45317 -8.04381 -6.76640 -5.75085 -3.21626 0.87234 2.04075 2.29779 2.46696 2.64518 2.99844 3.31131 3.40259 3.45160 3.47867 4.32417 4.38796 4.48593 4.71037 4.76021 5.01571 5.05751 5.16673 5.22675 5.27644 5.38556 5.44671 5.47000 5.60488 5.70722 5.76776 5.88604 5.90440 6.08072 6.09846 6.14403 6.30511 6.36493 6.47428 6.56016 6.70907 6.88396 6.93515 6.95279 7.08789 7.30078 7.42030 7.66166 7.80894 8.11137 8.38751 9.20922 9.83615 10.32629 11.29958 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.002850 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.994488 B = 9821.762530 C =10290.446562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.067 0.933 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.093 3.907 16 N -0.601 5.601 17 C 0.584 3.416 18 O -0.519 6.519 19 C 0.022 3.978 20 C -0.089 4.089 21 C -0.036 4.036 22 O -0.169 6.169 23 C 0.007 3.993 24 C -0.201 4.201 25 C 0.002 3.998 26 N -0.532 5.532 27 H 0.423 0.577 28 C 0.097 3.903 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.000 1.000 32 H 0.253 0.747 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.211 0.789 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -23.657 -2.291 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.312 5.312 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.085 0.915 13 C -0.172 4.172 14 C -0.168 4.168 15 C -0.031 4.031 16 N -0.334 5.334 17 C 0.371 3.629 18 O -0.394 6.394 19 C -0.091 4.091 20 C -0.117 4.117 21 C -0.088 4.088 22 O -0.066 6.066 23 C -0.061 4.061 24 C -0.222 4.222 25 C -0.111 4.111 26 N -0.139 5.139 27 H 0.264 0.736 28 C -0.026 4.026 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.177 0.823 40 H 0.227 0.773 41 H 0.170 0.830 42 H 0.112 0.888 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.247 -23.007 -2.792 23.562 hybrid contribution -0.379 0.704 0.398 0.893 sum 3.868 -22.303 -2.394 22.762 Atomic orbital electron populations 1.20783 0.82792 0.95678 0.99270 1.43861 1.01684 1.00013 1.85607 1.19172 0.99261 0.85479 1.34864 0.91426 1.25009 0.98229 0.98559 0.97574 1.70055 1.21871 1.27598 1.35390 0.86344 0.78370 0.83762 0.78130 1.20966 1.21677 1.20887 1.20586 0.96700 0.86284 0.90463 0.91454 1.22137 0.99296 0.94547 1.01209 1.21977 1.01411 0.97408 0.96021 1.22158 1.01053 0.94186 0.85665 1.48122 1.48641 1.19377 1.17288 1.16934 0.78731 0.84597 0.82655 1.90888 1.56171 1.56098 1.36236 1.20341 0.95584 0.87866 1.05304 1.19882 0.98052 0.88427 1.05307 1.19279 0.92544 0.89442 1.07563 1.84024 1.43765 1.13966 1.64870 1.24021 0.92593 0.91788 0.97678 1.20540 1.01118 0.90677 1.09889 1.19050 0.94747 0.90229 1.07040 1.41645 1.20191 1.04468 1.47585 0.73648 1.22519 0.96692 0.80792 1.02585 0.95136 0.94031 0.98200 0.93693 0.91217 0.92453 0.91458 0.91197 0.91253 0.90143 0.82307 0.77269 0.82976 0.88821 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 8.06 59.85 0.48 4.25 16 2 N -0.59 -14.37 2.81 -173.34 -0.49 -14.86 16 3 C -0.26 -7.06 9.55 -15.06 -0.14 -7.20 16 4 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 5 C 0.01 0.14 5.03 -17.43 -0.09 0.05 16 6 N -0.90 -26.03 10.94 55.49 0.61 -25.42 16 7 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 8 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 C 0.17 3.36 2.74 -67.81 -0.19 3.17 16 12 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 13 C -0.13 -2.23 5.14 -26.69 -0.14 -2.36 16 14 C -0.13 -1.64 6.10 -26.38 -0.16 -1.80 16 15 C 0.09 1.04 5.29 -3.48 -0.02 1.02 16 16 N -0.60 -8.83 2.97 -174.11 -0.52 -9.35 16 17 C 0.58 9.20 7.58 -12.93 -0.10 9.10 16 18 O -0.52 -10.07 16.43 5.17 0.08 -9.99 16 19 C 0.02 0.28 6.14 -81.86 -0.50 -0.22 16 20 C -0.09 -1.18 10.70 -39.11 -0.42 -1.60 16 21 C -0.04 -0.45 8.20 -38.61 -0.32 -0.77 16 22 O -0.17 -1.87 10.68 3.20 0.03 -1.83 16 23 C 0.01 0.05 12.02 29.40 0.35 0.40 16 24 C -0.20 -1.62 10.89 -39.70 -0.43 -2.05 16 25 C 0.00 0.02 8.11 -83.95 -0.68 -0.66 16 26 N -0.53 -5.58 4.75 -7.04 -0.03 -5.62 16 27 H 0.42 3.40 7.06 -40.82 -0.29 3.11 16 28 C 0.10 1.72 5.79 -3.72 -0.02 1.70 16 29 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 30 H 0.04 1.07 7.38 -51.93 -0.38 0.68 16 31 H 0.00 -0.01 6.36 -51.93 -0.33 -0.34 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.06 0.96 7.71 -51.93 -0.40 0.56 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.78 4.75 -51.93 -0.25 0.53 16 39 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.09 1.89 7.00 -51.93 -0.36 1.52 16 43 H 0.07 1.14 6.50 -51.93 -0.34 0.81 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -32.83 345.76 -8.15 -40.98 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.65 Total: 0.93 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.37 Total: 3.04 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.43 Total: -55.25 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.12 Total: -11.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.83 -8.15 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027433047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.615 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds