Wall clock time and date at job start Tue Mar 31 2020 11:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99962 * 2 1 4 4 H 1.07998 * 120.00353 * 204.21661 * 3 2 1 5 5 C 1.38817 * 119.99826 * 24.22519 * 3 2 1 6 6 N 1.31613 * 120.00145 * 15.40035 * 5 3 2 7 7 Si 1.86798 * 119.99842 * 195.40259 * 5 3 2 8 8 H 1.48501 * 109.47427 * 59.99674 * 7 5 3 9 9 H 1.48497 * 109.47424 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47184 * 300.00092 * 7 5 3 11 11 C 1.46498 * 119.99606 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.52171 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.50099 * 300.15782 * 11 2 1 14 14 C 1.53041 * 109.54092 * 181.32139 * 13 11 2 15 15 C 1.53629 * 109.23859 * 298.51124 * 14 13 11 16 16 N 1.46928 * 108.54347 * 54.85451 * 15 14 13 17 17 C 1.34779 * 120.62653 * 126.36835 * 16 15 14 18 18 O 1.21724 * 119.99549 * 188.47584 * 17 16 15 19 19 C 1.46498 * 120.00165 * 8.47095 * 17 16 15 20 20 C 1.37778 * 125.85582 * 209.77595 * 19 17 16 21 21 C 1.39939 * 107.68248 * 180.02562 * 20 19 17 22 22 O 1.35121 * 145.13651 * 179.97438 * 21 20 19 23 23 C 1.34381 * 109.62238 * 180.02562 * 22 21 20 24 24 C 1.34461 * 109.44937 * 359.97438 * 23 22 21 25 25 C 1.39131 * 107.40724 * 0.02562 * 21 20 19 26 26 N 1.37112 * 108.10873 * 359.97438 * 25 21 20 27 27 H 0.97004 * 125.74276 * 180.02562 * 26 25 21 28 28 C 1.46917 * 118.73908 * 306.09539 * 16 15 14 29 29 H 1.09001 * 109.46686 * 273.51133 * 1 2 3 30 30 H 1.08996 * 109.47081 * 33.50979 * 1 2 3 31 31 H 1.08997 * 109.47221 * 153.51589 * 1 2 3 32 32 H 0.96997 * 119.99974 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.45702 * 301.34184 * 13 11 2 34 34 H 1.08996 * 109.45673 * 61.30790 * 13 11 2 35 35 H 1.09004 * 109.49794 * 58.58380 * 14 13 11 36 36 H 1.08991 * 109.49597 * 178.68084 * 14 13 11 37 37 H 1.08994 * 109.73770 * 295.12018 * 15 14 13 38 38 H 1.08996 * 109.66097 * 174.55155 * 15 14 13 39 39 H 1.07994 * 126.16026 * 0.02562 * 20 19 17 40 40 H 1.07998 * 125.27707 * 179.97438 * 23 22 21 41 41 H 1.07993 * 126.41996 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.58465 * 173.64609 * 28 16 15 43 43 H 1.09007 * 109.58700 * 293.92960 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1584 1.2271 -0.3836 5 6 1.5473 2.3351 0.4933 6 7 0.4595 2.2442 1.2286 7 14 2.2805 4.0107 0.1134 8 1 2.3023 4.2197 -1.3567 9 1 1.4563 5.0680 0.7521 10 1 3.6663 4.0763 0.6432 11 6 2.1975 -1.2688 -0.0006 12 1 3.2694 -1.0706 0.0000 13 6 1.8252 -2.0741 1.2464 14 6 2.6145 -3.3851 1.2636 15 6 2.2450 -4.2147 0.0245 16 7 2.4681 -3.3920 -1.1723 17 6 3.2409 -3.8421 -2.1806 18 8 3.5447 -3.0968 -3.0938 19 6 3.7155 -5.2281 -2.1774 20 6 4.8911 -5.6798 -2.7360 21 6 4.9642 -7.0597 -2.5146 22 8 5.7009 -8.1759 -2.7071 23 6 5.0718 -9.2312 -2.1626 24 6 3.9170 -8.8257 -1.6058 25 6 3.8188 -7.4306 -1.8173 26 7 3.0605 -6.3064 -1.6145 27 1 2.2078 -6.2736 -1.1533 28 6 1.8278 -2.0721 -1.2515 29 1 -0.3633 0.0629 1.0258 30 1 -0.3633 0.8568 -0.5673 31 1 -0.3633 -0.9198 -0.4583 32 1 0.0388 3.0472 1.5736 33 1 2.0647 -1.4943 2.1379 34 1 0.7576 -2.2933 1.2317 35 1 3.6825 -3.1670 1.2531 36 1 2.3664 -3.9474 2.1637 37 1 1.1963 -4.5070 0.0766 38 1 2.8727 -5.1046 -0.0216 39 1 5.6242 -5.0776 -3.2519 40 1 5.4370 -10.2475 -2.1710 41 1 3.1987 -9.4485 -1.0936 42 1 2.1802 -1.5478 -2.1398 43 1 0.7458 -2.1934 -1.3039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027433047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:12 Heat of formation + Delta-G solvation = 46.443915 kcal Electronic energy + Delta-G solvation = -26655.511492 eV Core-core repulsion = 22897.065388 eV Total energy + Delta-G solvation = -3758.446104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.93070 -41.65688 -39.95148 -38.83828 -36.84716 -34.06804 -33.28778 -32.95411 -31.82370 -30.71356 -29.27838 -28.04389 -26.67083 -25.47058 -23.92326 -23.20800 -22.46466 -21.73293 -21.07756 -20.21754 -19.00365 -18.64547 -18.32785 -17.32076 -17.26654 -16.84807 -16.64979 -16.24412 -15.83831 -15.49860 -15.32911 -15.07572 -14.69021 -14.53781 -14.46297 -14.39839 -14.01011 -13.76117 -13.69346 -13.61652 -12.93382 -12.80577 -12.74779 -12.53946 -12.34967 -12.16694 -11.99347 -11.84248 -11.78703 -11.43412 -11.30503 -11.04705 -10.67346 -9.87255 -9.61897 -8.88321 -8.75327 -7.86208 -5.34621 -0.02050 1.15919 1.43769 1.46437 1.49938 1.52865 1.60783 1.71658 2.00544 2.28653 2.49541 3.26214 3.39338 3.55300 3.66888 3.93381 3.95371 3.95650 4.00273 4.14850 4.28322 4.32554 4.44841 4.51865 4.62093 4.71198 4.74340 4.76770 4.78771 4.87214 4.96331 5.03522 5.08704 5.24182 5.31964 5.43203 5.45860 5.46867 5.59152 5.63282 5.69445 6.15665 6.21595 6.31392 6.37099 6.89237 7.12947 7.84018 8.26805 9.16006 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.002850 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.994488 B = 9821.762530 C =10290.446562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.607 5.607 3 C -0.270 4.270 4 H 0.059 0.941 5 C -0.044 4.044 6 N -0.930 5.930 7 Si 0.963 3.037 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.092 3.908 16 N -0.598 5.598 17 C 0.586 3.414 18 O -0.568 6.568 19 C 0.003 3.997 20 C -0.098 4.098 21 C -0.074 4.074 22 O -0.187 6.187 23 C 0.026 3.974 24 C -0.211 4.211 25 C 0.014 3.986 26 N -0.517 5.517 27 H 0.436 0.564 28 C 0.113 3.887 29 H 0.009 0.991 30 H 0.012 0.988 31 H 0.036 0.964 32 H 0.250 0.750 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.259 0.741 41 H 0.186 0.814 42 H 0.062 0.938 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -27.513 -1.543 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.330 5.330 3 C -0.400 4.400 4 H 0.077 0.923 5 C -0.240 4.240 6 N -0.576 5.576 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.203 1.203 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.029 4.029 16 N -0.330 5.330 17 C 0.374 3.626 18 O -0.447 6.447 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.125 4.125 22 O -0.085 6.085 23 C -0.041 4.041 24 C -0.232 4.232 25 C -0.100 4.100 26 N -0.125 5.125 27 H 0.279 0.721 28 C -0.011 4.011 29 H 0.027 0.973 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.170 0.830 40 H 0.274 0.726 41 H 0.203 0.797 42 H 0.081 0.919 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.081 -26.909 -2.014 27.291 hybrid contribution -0.231 1.708 0.142 1.730 sum 3.850 -25.201 -1.872 25.562 Atomic orbital electron populations 1.20532 0.82490 0.96160 0.97749 1.44044 1.02118 1.00838 1.85952 1.19396 0.99176 0.87163 1.34265 0.92294 1.25684 0.98933 1.01538 0.97863 1.70186 1.22990 1.27988 1.36421 0.85409 0.77787 0.79921 0.77733 1.20856 1.21549 1.20299 1.20701 0.94860 0.85452 0.93098 0.93968 1.21932 1.00398 0.95897 0.97855 1.21927 1.00021 0.95555 0.98423 1.22447 1.03565 0.93851 0.83061 1.48112 1.48062 1.18448 1.18378 1.17236 0.77938 0.85374 0.82004 1.90856 1.58013 1.57694 1.38120 1.19716 0.96364 0.87116 1.07698 1.19969 0.98156 0.89477 1.05004 1.19323 0.94071 0.89608 1.09495 1.84031 1.44496 1.14370 1.65651 1.25113 0.91755 0.92461 0.94728 1.21005 1.02220 0.89292 1.10639 1.19541 0.93699 0.91302 1.05463 1.41477 1.20421 1.03616 1.47032 0.72092 1.22042 0.97235 0.81994 0.99813 0.97263 0.96949 0.94532 0.94097 0.93898 0.91646 0.92484 0.87597 0.88009 0.87939 0.82973 0.72556 0.79699 0.91946 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.44 8.06 127.77 1.03 9.46 16 2 N -0.61 -30.44 2.81 -702.34 -1.97 -32.41 16 3 C -0.27 -15.26 9.55 84.04 0.80 -14.46 16 4 H 0.06 3.35 7.85 -2.91 -0.02 3.33 16 5 C -0.04 -2.51 5.03 84.86 0.43 -2.09 16 6 N -0.93 -54.91 10.94 21.65 0.24 -54.67 16 7 Si 0.96 46.16 29.58 68.60 2.03 48.19 16 8 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 C 0.17 6.77 2.74 45.07 0.12 6.89 16 12 H 0.04 1.89 7.88 -2.38 -0.02 1.87 16 13 C -0.12 -3.99 5.14 30.62 0.16 -3.83 16 14 C -0.12 -2.75 6.10 30.82 0.19 -2.56 16 15 C 0.09 1.78 5.29 86.51 0.46 2.24 16 16 N -0.60 -17.10 2.97 -822.96 -2.44 -19.54 16 17 C 0.59 18.64 7.58 86.40 0.66 19.29 16 18 O -0.57 -23.18 16.43 -4.43 -0.07 -23.25 16 19 C 0.00 0.09 6.14 40.19 0.25 0.34 16 20 C -0.10 -2.61 10.70 22.57 0.24 -2.37 16 21 C -0.07 -1.75 8.20 22.90 0.19 -1.56 16 22 O -0.19 -3.72 10.68 -11.48 -0.12 -3.85 16 23 C 0.03 0.27 12.02 66.96 0.80 1.08 16 24 C -0.21 -2.45 10.89 22.20 0.24 -2.20 16 25 C 0.01 0.26 8.11 39.32 0.32 0.58 16 26 N -0.52 -9.52 4.75 -176.19 -0.84 -10.35 16 27 H 0.44 5.38 7.06 -92.70 -0.65 4.73 16 28 C 0.11 4.04 5.79 86.36 0.50 4.54 16 29 H 0.01 0.48 7.41 -2.39 -0.02 0.46 16 30 H 0.01 0.63 7.38 -2.39 -0.02 0.61 16 31 H 0.04 1.45 6.36 -2.39 -0.02 1.44 16 32 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.06 2.05 7.71 -2.39 -0.02 2.03 16 35 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.61 4.75 -2.39 -0.01 1.59 16 39 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.26 -0.16 8.06 -2.91 -0.02 -0.19 16 41 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 42 H 0.06 2.63 7.00 -2.39 -0.02 2.61 16 43 H 0.08 2.61 6.50 -2.38 -0.02 2.59 16 Total: -1.00 -76.33 345.76 3.60 -72.74 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.39 Total: 7.79 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.38 Total: 15.35 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -5.01 Total: -116.97 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.20 Total: -27.10 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.33 3.60 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027433047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.181 kcal (2) G-P(sol) polarization free energy of solvation -76.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds