Wall clock time and date at job start Tue Mar 31 2020 11:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35704 * 119.44206 * 2 1 4 4 C 1.35257 * 121.00400 * 179.97438 * 3 2 1 5 5 C 1.41155 * 119.87127 * 0.02562 * 4 3 2 6 6 C 1.48456 * 120.54293 * 179.97438 * 5 4 3 7 7 O 1.21470 * 119.99851 * 284.63470 * 6 5 4 8 8 N 1.34778 * 120.00039 * 104.62895 * 6 5 4 9 9 C 1.47162 * 120.70870 * 175.71907 * 8 6 5 10 10 C 1.53881 * 108.02944 * 132.75340 * 9 8 6 11 11 H 1.09003 * 112.58117 * 182.22271 * 10 9 8 12 12 C 1.54131 * 107.71107 * 306.32471 * 10 9 8 13 13 C 1.54275 * 104.89274 * 89.41145 * 12 10 9 14 14 C 1.54547 * 104.84995 * 359.80891 * 13 12 10 15 15 H 1.08997 * 112.18668 * 146.40793 * 14 13 12 16 16 C 1.49246 * 120.76943 * 355.79972 * 8 6 5 17 17 N 1.48310 * 107.20980 * 58.36069 * 10 9 8 18 18 C 1.36936 * 128.07563 * 106.70545 * 17 10 9 19 19 H 1.07998 * 119.99590 * 219.05191 * 18 17 10 20 20 C 1.38807 * 120.00186 * 39.04851 * 18 17 10 21 21 N 1.31622 * 120.00246 * 189.10430 * 20 18 17 22 22 Si 1.86796 * 120.00082 * 9.11171 * 20 18 17 23 23 H 1.48502 * 109.47221 * 272.62309 * 22 20 18 24 24 H 1.48496 * 109.47226 * 32.61751 * 22 20 18 25 25 H 1.48500 * 109.47313 * 152.62205 * 22 20 18 26 26 C 1.38296 * 118.91906 * 0.25251 * 5 4 3 27 27 C 1.34598 * 119.44142 * 180.02562 * 2 1 3 28 28 O 1.22005 * 119.96590 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46910 * 90.00093 * 1 2 3 30 30 H 1.09000 * 109.46697 * 209.99635 * 1 2 3 31 31 H 1.09000 * 109.46879 * 330.00051 * 1 2 3 32 32 H 1.08006 * 119.49572 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.07048 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.75207 * 13.11785 * 9 8 6 35 35 H 1.08999 * 109.74688 * 252.38561 * 9 8 6 36 36 H 1.09002 * 110.50856 * 330.47260 * 12 10 9 37 37 H 1.09002 * 110.27829 * 208.23176 * 12 10 9 38 38 H 1.09001 * 110.36602 * 240.96770 * 13 12 10 39 39 H 1.09005 * 110.36701 * 118.64762 * 13 12 10 40 40 H 1.08998 * 110.51643 * 107.81696 * 16 8 6 41 41 H 1.09001 * 109.74738 * 346.59937 * 16 8 6 42 42 H 0.96992 * 120.00351 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.48888 * 179.74948 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1818 0.0000 4 6 3.4841 1.2186 0.0005 5 6 4.2202 0.0142 0.0005 6 6 5.7046 0.0373 0.0005 7 8 6.3077 0.3125 -1.0173 8 7 6.3830 -0.2470 1.1299 9 6 7.8528 -0.3206 1.1253 10 6 8.3739 0.4892 2.3256 11 1 9.4627 0.5164 2.3712 12 6 7.7616 1.9011 2.2400 13 6 6.4328 1.8048 3.0179 14 6 6.3612 0.3380 3.4995 15 1 5.8685 0.2462 4.4675 16 6 5.6610 -0.4958 2.4121 17 7 7.7765 -0.1029 3.5471 18 6 8.3899 -0.8721 4.4996 19 1 7.8667 -1.7101 4.9360 20 6 9.6840 -0.5749 4.9040 21 7 10.3390 -1.4110 5.6814 22 14 10.4960 1.0119 4.3453 23 1 11.1615 0.7930 3.0359 24 1 9.4661 2.0725 4.2059 25 1 11.5060 1.4315 5.3499 26 6 3.5361 -1.1877 -0.0053 27 6 2.1266 -1.1722 -0.0005 28 8 1.5057 -2.2224 -0.0015 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.5748 2.1070 -0.0004 33 1 3.9996 2.1677 0.0001 34 1 8.2400 0.1035 0.1989 35 1 8.1698 -1.3595 1.2164 36 1 7.5742 2.1738 1.2014 37 1 8.4236 2.6291 2.7090 38 1 5.5920 2.0300 2.3618 39 1 6.4422 2.4839 3.8705 40 1 5.7022 -1.5529 2.6748 41 1 4.6222 -0.1795 2.3173 42 1 11.2432 -1.2032 5.9643 43 1 4.0739 -2.1243 -0.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029364697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:41 Heat of formation + Delta-G solvation = 18.761858 kcal Electronic energy + Delta-G solvation = -27634.654957 eV Core-core repulsion = 23875.008468 eV Total energy + Delta-G solvation = -3759.646488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57654 -40.24283 -38.25628 -37.02694 -34.80356 -33.84777 -32.45725 -31.12372 -30.19747 -30.00509 -28.35351 -26.53980 -24.64085 -24.21919 -23.73668 -22.94973 -20.41975 -20.02459 -18.93590 -17.83221 -17.73086 -17.35543 -16.55271 -16.32651 -16.14249 -15.64081 -15.34722 -15.00729 -14.41681 -13.86315 -13.78067 -13.58038 -13.50216 -13.41010 -13.20339 -13.02714 -12.80991 -12.46196 -12.22919 -12.13941 -11.99683 -11.88083 -11.32925 -11.09196 -10.94854 -10.66325 -10.52149 -10.30631 -10.20892 -9.98919 -9.91640 -9.64938 -9.57231 -8.75379 -8.43932 -8.23693 -6.94611 -6.06986 -3.59326 0.41991 1.54682 2.34274 2.64914 3.05734 3.23043 3.37580 3.38711 3.42053 4.21280 4.27379 4.41257 4.41379 4.69537 4.83168 4.88996 4.92247 5.07363 5.11251 5.25258 5.34201 5.36077 5.44777 5.49780 5.54336 5.57015 5.72937 5.80682 5.95099 5.98869 6.11499 6.13500 6.15932 6.27107 6.30955 6.35366 6.36884 6.59515 6.72514 6.75622 6.85692 7.57948 7.74304 7.76104 8.21531 8.22945 8.67676 9.52691 10.15796 11.07570 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.003859 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.592388 B = 7253.089800 C = 7491.649160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.499 5.499 3 C 0.132 3.868 4 C -0.200 4.200 5 C -0.004 4.004 6 C 0.551 3.449 7 O -0.540 6.540 8 N -0.583 5.583 9 C 0.104 3.896 10 C 0.119 3.881 11 H 0.086 0.914 12 C -0.133 4.133 13 C -0.123 4.123 14 C 0.134 3.866 15 H 0.090 0.910 16 C 0.099 3.901 17 N -0.594 5.594 18 C -0.246 4.246 19 H 0.086 0.914 20 C 0.037 3.963 21 N -0.906 5.906 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.257 1.257 25 H -0.302 1.302 26 C -0.208 4.208 27 C 0.517 3.483 28 O -0.548 6.548 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.266 0.734 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.466 8.977 -9.731 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.210 5.210 3 C 0.005 3.995 4 C -0.224 4.224 5 C -0.011 4.011 6 C 0.336 3.664 7 O -0.419 6.419 8 N -0.314 5.314 9 C -0.020 4.020 10 C 0.012 3.988 11 H 0.103 0.897 12 C -0.172 4.172 13 C -0.162 4.162 14 C 0.026 3.974 15 H 0.108 0.892 16 C -0.025 4.025 17 N -0.317 5.317 18 C -0.374 4.374 19 H 0.103 0.897 20 C -0.165 4.165 21 N -0.547 5.547 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.181 1.181 25 H -0.230 1.230 26 C -0.230 4.230 27 C 0.318 3.682 28 O -0.430 6.430 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.340 8.291 -10.014 21.672 hybrid contribution 0.690 0.884 -0.255 1.150 sum -16.650 9.175 -10.270 21.607 Atomic orbital electron populations 1.22177 0.77091 1.05103 1.03921 1.45376 1.09403 1.06805 1.59463 1.21817 0.93386 0.89391 0.94884 1.20529 0.92139 0.98487 1.11243 1.20489 0.94249 0.94105 0.92229 1.18364 0.86357 0.77870 0.83764 1.90778 1.69104 1.49597 1.32409 1.48575 1.07663 1.66811 1.08379 1.22408 0.77940 1.01698 0.99955 1.22183 0.97726 0.91604 0.87319 0.89681 1.22579 0.97294 0.97952 0.99366 1.22451 0.96778 0.97898 0.99099 1.22056 0.88373 0.91058 0.95868 0.89233 1.22943 0.94564 1.01484 0.83522 1.45351 1.05513 1.59498 1.21314 1.18519 0.98213 1.06468 1.14203 0.89698 1.25510 0.97834 0.97299 0.95813 1.69737 1.12131 1.36181 1.36681 0.86845 0.79008 0.85825 0.76840 1.21166 1.18141 1.22994 1.22527 0.92464 0.98902 1.09129 1.17006 0.88815 0.82796 0.79541 1.90959 1.69374 1.29711 1.53002 0.90581 0.88669 0.89552 0.81531 0.83227 0.89981 0.90890 0.92103 0.91924 0.92592 0.92062 0.90580 0.91019 0.92426 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.34 59.85 0.62 0.96 16 2 N -0.50 -4.54 2.98 -127.13 -0.38 -4.91 16 3 C 0.13 0.92 10.25 -16.90 -0.17 0.74 16 4 C -0.20 -1.90 9.78 -39.54 -0.39 -2.28 16 5 C 0.00 -0.05 3.83 -104.56 -0.40 -0.45 16 6 C 0.55 8.75 7.19 -12.05 -0.09 8.67 16 7 O -0.54 -10.22 16.56 5.39 0.09 -10.13 16 8 N -0.58 -9.52 2.28 -170.70 -0.39 -9.91 16 9 C 0.10 1.89 5.91 -3.22 -0.02 1.87 16 10 C 0.12 2.37 2.86 -65.88 -0.19 2.18 16 11 H 0.09 1.87 4.13 -51.93 -0.21 1.65 16 12 C -0.13 -2.32 5.78 -25.47 -0.15 -2.47 16 13 C -0.12 -1.93 6.19 -25.25 -0.16 -2.09 16 14 C 0.13 2.34 4.27 -65.66 -0.28 2.06 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.10 1.51 5.82 -2.06 -0.01 1.50 16 17 N -0.59 -12.98 2.33 -152.84 -0.36 -13.34 16 18 C -0.25 -6.49 10.74 -15.06 -0.16 -6.65 16 19 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 20 C 0.04 1.01 5.50 -17.43 -0.10 0.91 16 21 N -0.91 -26.80 13.97 55.49 0.78 -26.03 16 22 Si 0.88 21.23 24.72 -169.99 -4.20 17.03 16 23 H -0.28 -6.68 6.61 56.52 0.37 -6.30 16 24 H -0.26 -5.84 5.21 56.52 0.29 -5.55 16 25 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 26 C -0.21 -2.76 9.55 -38.53 -0.37 -3.13 16 27 C 0.52 6.80 7.42 -15.31 -0.11 6.68 16 28 O -0.55 -8.97 16.62 4.91 0.08 -8.88 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.69 7.37 -51.93 -0.38 0.31 16 31 H 0.09 0.22 8.00 -51.93 -0.42 -0.20 16 32 H 0.17 0.42 8.02 -52.48 -0.42 -0.01 16 33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.08 1.47 7.08 -51.93 -0.37 1.10 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 0.99 7.83 -51.93 -0.41 0.59 16 37 H 0.06 1.13 6.48 -51.93 -0.34 0.80 16 38 H 0.06 0.74 7.86 -51.93 -0.41 0.34 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 0.92 6.48 -51.93 -0.34 0.59 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -34.13 340.26 -7.17 -41.30 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.94 Total: 1.24 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.97 Total: 8.51 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.35 Total: -54.19 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.17 Total: -19.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.20 Total: 17.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.13 -7.17 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029364697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.060 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds