Wall clock time and date at job start Tue Mar 31 2020 11:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35704 * 119.44206 * 2 1 4 4 C 1.35257 * 121.00400 * 179.97438 * 3 2 1 5 5 C 1.41155 * 119.87127 * 0.02562 * 4 3 2 6 6 C 1.48456 * 120.54293 * 179.97438 * 5 4 3 7 7 O 1.21470 * 119.99851 * 284.63470 * 6 5 4 8 8 N 1.34778 * 120.00039 * 104.62895 * 6 5 4 9 9 C 1.47162 * 120.70870 * 175.71907 * 8 6 5 10 10 C 1.53881 * 108.02944 * 132.75340 * 9 8 6 11 11 H 1.09003 * 112.58117 * 182.22271 * 10 9 8 12 12 C 1.54131 * 107.71107 * 306.32471 * 10 9 8 13 13 C 1.54275 * 104.89274 * 89.41145 * 12 10 9 14 14 C 1.54547 * 104.84995 * 359.80891 * 13 12 10 15 15 H 1.08997 * 112.18668 * 146.40793 * 14 13 12 16 16 C 1.49246 * 120.76943 * 355.79972 * 8 6 5 17 17 N 1.48310 * 107.20980 * 58.36069 * 10 9 8 18 18 C 1.36936 * 128.07563 * 106.70545 * 17 10 9 19 19 H 1.07998 * 119.99590 * 219.05191 * 18 17 10 20 20 C 1.38807 * 120.00186 * 39.04851 * 18 17 10 21 21 N 1.31622 * 120.00246 * 189.10430 * 20 18 17 22 22 Si 1.86796 * 120.00082 * 9.11171 * 20 18 17 23 23 H 1.48502 * 109.47221 * 272.62309 * 22 20 18 24 24 H 1.48496 * 109.47226 * 32.61751 * 22 20 18 25 25 H 1.48500 * 109.47313 * 152.62205 * 22 20 18 26 26 C 1.38296 * 118.91906 * 0.25251 * 5 4 3 27 27 C 1.34598 * 119.44142 * 180.02562 * 2 1 3 28 28 O 1.22005 * 119.96590 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46910 * 90.00093 * 1 2 3 30 30 H 1.09000 * 109.46697 * 209.99635 * 1 2 3 31 31 H 1.09000 * 109.46879 * 330.00051 * 1 2 3 32 32 H 1.08006 * 119.49572 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.07048 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.75207 * 13.11785 * 9 8 6 35 35 H 1.08999 * 109.74688 * 252.38561 * 9 8 6 36 36 H 1.09002 * 110.50856 * 330.47260 * 12 10 9 37 37 H 1.09002 * 110.27829 * 208.23176 * 12 10 9 38 38 H 1.09001 * 110.36602 * 240.96770 * 13 12 10 39 39 H 1.09005 * 110.36701 * 118.64762 * 13 12 10 40 40 H 1.08998 * 110.51643 * 107.81696 * 16 8 6 41 41 H 1.09001 * 109.74738 * 346.59937 * 16 8 6 42 42 H 0.96992 * 120.00351 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.48888 * 179.74948 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1818 0.0000 4 6 3.4841 1.2186 0.0005 5 6 4.2202 0.0142 0.0005 6 6 5.7046 0.0373 0.0005 7 8 6.3077 0.3125 -1.0173 8 7 6.3830 -0.2470 1.1299 9 6 7.8528 -0.3206 1.1253 10 6 8.3739 0.4892 2.3256 11 1 9.4627 0.5164 2.3712 12 6 7.7616 1.9011 2.2400 13 6 6.4328 1.8048 3.0179 14 6 6.3612 0.3380 3.4995 15 1 5.8685 0.2462 4.4675 16 6 5.6610 -0.4958 2.4121 17 7 7.7765 -0.1029 3.5471 18 6 8.3899 -0.8721 4.4996 19 1 7.8667 -1.7101 4.9360 20 6 9.6840 -0.5749 4.9040 21 7 10.3390 -1.4110 5.6814 22 14 10.4960 1.0119 4.3453 23 1 11.1615 0.7930 3.0359 24 1 9.4661 2.0725 4.2059 25 1 11.5060 1.4315 5.3499 26 6 3.5361 -1.1877 -0.0053 27 6 2.1266 -1.1722 -0.0005 28 8 1.5057 -2.2224 -0.0015 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.5748 2.1070 -0.0004 33 1 3.9996 2.1677 0.0001 34 1 8.2400 0.1035 0.1989 35 1 8.1698 -1.3595 1.2164 36 1 7.5742 2.1738 1.2014 37 1 8.4236 2.6291 2.7090 38 1 5.5920 2.0300 2.3618 39 1 6.4422 2.4839 3.8705 40 1 5.7022 -1.5529 2.6748 41 1 4.6222 -0.1795 2.3173 42 1 11.2432 -1.2032 5.9643 43 1 4.0739 -2.1243 -0.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029364697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:40 Heat of formation + Delta-G solvation = -4.479582 kcal Electronic energy + Delta-G solvation = -27635.662781 eV Core-core repulsion = 23875.008468 eV Total energy + Delta-G solvation = -3760.654313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47746 -41.57343 -39.64301 -37.98323 -35.81585 -35.28635 -34.27640 -32.54338 -31.74236 -31.01453 -29.20786 -27.84425 -25.85617 -25.62182 -24.93139 -24.07891 -21.81933 -21.41794 -20.41597 -19.09730 -18.62441 -18.28490 -18.08835 -17.48325 -17.25988 -16.89188 -16.64637 -16.40974 -15.33917 -15.29030 -15.12960 -15.01100 -14.82981 -14.78196 -14.22241 -14.16313 -13.98942 -13.69350 -13.46326 -13.34929 -12.99787 -12.87934 -12.82356 -12.81130 -12.49778 -12.23818 -11.87718 -11.61058 -11.60898 -11.57299 -11.22178 -11.11334 -10.85935 -10.65284 -9.95284 -9.05754 -8.75933 -8.18996 -5.67724 -0.44241 0.73037 1.30637 1.37551 1.39882 1.50992 1.66988 1.80018 2.40682 2.49164 3.04295 3.12744 3.17360 3.70154 3.76407 3.87073 3.93657 4.07060 4.10291 4.12462 4.18909 4.25973 4.36273 4.46434 4.50643 4.56959 4.61476 4.68665 4.75074 4.84215 4.86204 4.88297 4.95148 4.97975 5.03226 5.18612 5.23996 5.38679 5.44380 5.48553 5.83561 5.97576 6.14518 6.29439 6.70871 6.87254 6.91557 7.45964 8.21175 8.99480 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.003859 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.592388 B = 7253.089800 C = 7491.649160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.491 5.491 3 C 0.171 3.829 4 C -0.220 4.220 5 C 0.005 3.995 6 C 0.555 3.445 7 O -0.571 6.571 8 N -0.583 5.583 9 C 0.111 3.889 10 C 0.111 3.889 11 H 0.064 0.936 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.129 3.871 15 H 0.093 0.907 16 C 0.109 3.891 17 N -0.613 5.613 18 C -0.229 4.229 19 H 0.048 0.952 20 C -0.023 4.023 21 N -0.958 5.958 22 Si 0.944 3.056 23 H -0.280 1.280 24 H -0.232 1.232 25 H -0.314 1.314 26 C -0.240 4.240 27 C 0.508 3.492 28 O -0.597 6.597 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.231 0.769 33 H 0.173 0.827 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.263 0.737 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.732 13.351 -11.156 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.199 5.199 3 C 0.044 3.956 4 C -0.242 4.242 5 C -0.002 4.002 6 C 0.343 3.657 7 O -0.451 6.451 8 N -0.314 5.314 9 C -0.014 4.014 10 C 0.005 3.995 11 H 0.082 0.918 12 C -0.166 4.166 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.111 0.889 16 C -0.014 4.014 17 N -0.337 5.337 18 C -0.358 4.358 19 H 0.066 0.934 20 C -0.219 4.219 21 N -0.603 5.603 22 Si 0.773 3.227 23 H -0.207 1.207 24 H -0.155 1.155 25 H -0.243 1.243 26 C -0.263 4.263 27 C 0.311 3.689 28 O -0.484 6.484 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.248 0.752 33 H 0.191 0.809 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.675 12.710 -11.468 26.842 hybrid contribution 1.557 -0.508 0.104 1.641 sum -19.118 12.201 -11.363 25.367 Atomic orbital electron populations 1.22515 0.74656 1.06480 1.05252 1.45548 1.11052 1.06403 1.56915 1.22739 0.92897 0.90204 0.89798 1.20827 0.93182 0.97672 1.12536 1.20371 0.92061 0.95457 0.92360 1.18798 0.87677 0.76460 0.82749 1.90763 1.70186 1.50860 1.33289 1.48561 1.06789 1.66947 1.09143 1.22135 0.79560 1.00194 0.99508 1.22263 0.96801 0.93646 0.86823 0.91844 1.22531 0.97941 0.95432 1.00709 1.22424 0.96980 0.95907 0.99815 1.22290 0.85644 0.92943 0.96895 0.88914 1.22842 0.95911 1.00220 0.82438 1.45390 1.07510 1.59507 1.21295 1.18330 0.97963 1.05641 1.13875 0.93443 1.26162 0.98711 1.00370 0.96638 1.69888 1.12562 1.38325 1.39523 0.85882 0.78222 0.82611 0.75957 1.20746 1.15531 1.24277 1.22274 0.93012 0.98507 1.12527 1.16944 0.88611 0.83566 0.79738 1.90927 1.70047 1.31624 1.55778 0.89288 0.90716 0.84803 0.75247 0.80944 0.89403 0.93096 0.90468 0.92181 0.89025 0.91170 0.92487 0.87580 0.92809 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.34 127.77 1.32 1.68 16 2 N -0.49 -6.86 2.98 -674.32 -2.01 -8.87 16 3 C 0.17 1.24 10.25 83.41 0.86 2.10 16 4 C -0.22 -2.97 9.78 22.30 0.22 -2.76 16 5 C 0.00 0.11 3.83 -19.82 -0.08 0.04 16 6 C 0.56 16.68 7.19 86.97 0.63 17.31 16 7 O -0.57 -20.77 16.56 -3.62 -0.06 -20.83 16 8 N -0.58 -18.33 2.28 -812.29 -1.86 -20.19 16 9 C 0.11 4.02 5.91 86.55 0.51 4.53 16 10 C 0.11 4.34 2.86 45.32 0.13 4.47 16 11 H 0.06 2.76 4.13 -2.39 -0.01 2.75 16 12 C -0.13 -4.02 5.78 31.41 0.18 -3.84 16 13 C -0.11 -3.04 6.19 31.55 0.20 -2.85 16 14 C 0.13 4.24 4.27 45.47 0.19 4.44 16 15 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 16 C 0.11 3.19 5.82 86.15 0.50 3.69 16 17 N -0.61 -26.75 2.33 -637.48 -1.48 -28.23 16 18 C -0.23 -12.50 10.74 84.03 0.90 -11.60 16 19 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 20 C -0.02 -1.30 5.50 84.86 0.47 -0.83 16 21 N -0.96 -59.37 13.97 21.65 0.30 -59.06 16 22 Si 0.94 44.64 24.72 68.60 1.70 46.34 16 23 H -0.28 -12.90 6.61 99.48 0.66 -12.24 16 24 H -0.23 -9.88 5.21 99.48 0.52 -9.37 16 25 H -0.31 -15.31 7.11 99.48 0.71 -14.61 16 26 C -0.24 -6.30 9.55 22.95 0.22 -6.08 16 27 C 0.51 12.78 7.42 84.94 0.63 13.41 16 28 O -0.60 -19.87 16.62 -5.33 -0.09 -19.96 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.92 7.37 -2.39 -0.02 0.90 16 31 H 0.13 -0.28 8.00 -2.39 -0.02 -0.29 16 32 H 0.23 -1.10 8.02 -2.91 -0.02 -1.13 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.09 3.10 7.08 -2.39 -0.02 3.08 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 2.21 7.83 -2.39 -0.02 2.19 16 37 H 0.06 1.94 6.48 -2.39 -0.02 1.93 16 38 H 0.09 1.87 7.86 -2.39 -0.02 1.85 16 39 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.11 2.41 6.48 -2.39 -0.02 2.39 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -81.55 340.26 4.16 -77.38 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.79 Total: 9.70 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.88 Total: 23.72 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.05 Total: -116.35 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.15 Total: -40.79 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.70 Total: 46.34 kcal Total: -81.55 4.16 -77.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029364697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.902 kcal (2) G-P(sol) polarization free energy of solvation -81.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds