Wall clock time and date at job start Tue Mar 31 2020 11:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34600 * 119.47633 * 2 1 4 4 C 1.38000 * 120.45685 * 180.28225 * 3 2 1 5 5 C 1.47459 * 120.25616 * 179.73929 * 4 3 2 6 6 O 1.21598 * 120.00064 * 255.53764 * 5 4 3 7 7 N 1.34777 * 119.99591 * 75.54639 * 5 4 3 8 8 C 1.47160 * 120.71506 * 5.85242 * 7 5 4 9 9 C 1.55889 * 107.94808 * 132.41436 * 8 7 5 10 10 H 1.09000 * 112.45792 * 181.85177 * 9 8 7 11 11 C 1.54548 * 108.44488 * 307.13538 * 9 8 7 12 12 C 1.53730 * 104.95308 * 88.28707 * 11 9 8 13 13 C 1.54548 * 104.95568 * 0.02562 * 12 11 9 14 14 H 1.09002 * 112.18001 * 146.28588 * 13 12 11 15 15 C 1.47168 * 120.70587 * 185.83888 * 7 5 4 16 16 N 1.48304 * 104.35655 * 24.57753 * 13 12 11 17 17 C 1.36936 * 128.07869 * 139.07914 * 16 13 12 18 18 H 1.07997 * 120.00258 * 338.22526 * 17 16 13 19 19 C 1.38814 * 119.99974 * 158.21903 * 17 16 13 20 20 N 1.31625 * 119.99780 * 354.02534 * 19 17 16 21 21 Si 1.86797 * 120.00083 * 174.02250 * 19 17 16 22 22 H 1.48503 * 109.47273 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47069 * 300.00006 * 21 19 17 24 24 H 1.48495 * 109.47016 * 60.00269 * 21 19 17 25 25 C 1.41597 * 119.48246 * 359.46707 * 4 3 2 26 26 C 1.35971 * 119.01074 * 0.24920 * 25 4 3 27 27 C 1.34536 * 119.47916 * 179.72198 * 2 1 3 28 28 O 1.21958 * 119.74745 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47081 * 180.28048 * 1 2 3 30 30 H 1.09001 * 109.47001 * 300.27424 * 1 2 3 31 31 H 1.08998 * 109.47169 * 60.28052 * 1 2 3 32 32 H 1.08001 * 119.77153 * 0.02925 * 3 2 1 33 33 H 1.08996 * 109.75230 * 252.37525 * 8 7 5 34 34 H 1.09004 * 109.74520 * 13.11157 * 8 7 5 35 35 H 1.09001 * 110.36725 * 207.00750 * 11 9 8 36 36 H 1.09001 * 110.36650 * 329.21360 * 11 9 8 37 37 H 1.09001 * 110.42203 * 241.06690 * 12 11 9 38 38 H 1.09010 * 110.20711 * 118.82270 * 12 11 9 39 39 H 1.09002 * 109.74724 * 107.62275 * 15 7 5 40 40 H 1.09001 * 109.78755 * 346.91674 * 15 7 5 41 41 H 0.97005 * 119.99761 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.48869 * 180.27195 * 25 4 3 43 43 H 1.08001 * 120.24498 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1718 0.0000 4 6 3.5071 1.1954 -0.0059 5 6 4.2282 2.4816 -0.0116 6 8 4.7506 2.8812 -1.0344 7 7 4.3083 3.2143 1.1168 8 6 3.7946 2.6891 2.3919 9 6 4.8839 2.9244 3.4820 10 1 4.5906 2.5314 4.4554 11 6 6.2179 2.3298 2.9766 12 6 6.8842 3.4666 2.1847 13 6 5.8962 4.6512 2.2797 14 1 6.4085 5.6129 2.3103 15 6 4.9116 4.5565 1.1001 16 7 5.1242 4.3878 3.5183 17 6 4.7302 5.2850 4.4748 18 1 5.2492 6.2264 4.5787 19 6 3.6636 4.9847 5.3109 20 7 2.9569 3.8926 5.1095 21 14 3.2313 6.1302 6.7216 22 1 2.0619 5.5879 7.4591 23 1 4.3902 6.2391 7.6437 24 1 2.8983 7.4737 6.1840 25 6 4.2250 -0.0251 -0.0004 26 6 3.5344 -1.1963 0.0053 27 6 2.1271 -1.1712 0.0057 28 8 1.5031 -2.2190 0.0103 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5181 0.8875 31 1 -0.3633 0.5095 -0.8925 32 1 1.5751 2.0999 0.0005 33 1 2.8766 3.2108 2.6621 34 1 3.5982 1.6211 2.2980 35 1 6.8464 2.0385 3.8182 36 1 6.0303 1.4727 2.3298 37 1 7.0262 3.1731 1.1446 38 1 7.8391 3.7322 2.6385 39 1 4.1331 5.3116 1.2087 40 1 5.4449 4.7097 0.1619 41 1 2.2117 3.6825 5.6940 42 1 5.3050 -0.0255 -0.0005 43 1 4.0618 -2.1388 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029378007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:44 Heat of formation + Delta-G solvation = 10.465593 kcal Electronic energy + Delta-G solvation = -27831.933802 eV Core-core repulsion = 24071.927560 eV Total energy + Delta-G solvation = -3760.006241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50340 -39.94127 -37.93785 -36.75896 -34.67852 -33.73807 -32.54042 -30.80433 -29.91348 -29.32131 -27.94715 -26.24911 -24.51083 -23.88600 -23.65461 -22.81841 -20.34586 -19.69599 -18.81035 -17.81782 -17.62044 -16.86552 -16.22602 -16.18752 -15.78010 -15.29778 -15.19000 -14.67316 -14.30373 -13.87138 -13.63074 -13.48093 -13.42366 -13.03413 -12.90000 -12.74998 -12.56761 -12.12995 -11.90535 -11.80195 -11.72039 -11.53746 -11.11789 -10.94254 -10.84489 -10.45472 -10.21784 -10.13629 -10.06606 -9.93400 -9.75676 -9.64504 -9.56375 -8.79730 -8.16663 -7.99500 -6.84876 -5.95959 -3.32991 0.74562 1.59434 2.43156 2.95367 3.29920 3.35391 3.35998 3.43395 3.64569 4.34374 4.44176 4.52616 4.80540 4.92385 5.01952 5.04958 5.14010 5.23718 5.25501 5.44905 5.61858 5.66098 5.73514 5.84477 5.84870 5.88803 5.97783 6.02987 6.14568 6.25515 6.32107 6.33995 6.49435 6.53115 6.59353 6.68325 6.83290 6.88341 6.89540 7.17582 7.37345 7.59093 7.89353 7.96238 8.06376 8.53643 8.96521 9.58132 10.37916 11.18330 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.004606 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.620471 B = 6077.782665 C = 7040.081097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.489 5.489 3 C 0.171 3.829 4 C -0.219 4.219 5 C 0.566 3.434 6 O -0.554 6.554 7 N -0.581 5.581 8 C 0.105 3.895 9 C 0.172 3.828 10 H 0.110 0.890 11 C -0.135 4.135 12 C -0.124 4.124 13 C 0.133 3.867 14 H 0.078 0.922 15 C 0.102 3.898 16 N -0.584 5.584 17 C -0.228 4.228 18 H 0.073 0.927 19 C 0.003 3.997 20 N -0.913 5.913 21 Si 0.912 3.088 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.017 3.983 26 C -0.245 4.245 27 C 0.514 3.486 28 O -0.556 6.556 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.138 0.862 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -4.898 -8.042 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.197 5.197 3 C 0.040 3.960 4 C -0.228 4.228 5 C 0.351 3.649 6 O -0.434 6.434 7 N -0.312 5.312 8 C -0.018 4.018 9 C 0.064 3.936 10 H 0.128 0.872 11 C -0.174 4.174 12 C -0.163 4.163 13 C 0.025 3.975 14 H 0.096 0.904 15 C -0.022 4.022 16 N -0.305 5.305 17 C -0.357 4.357 18 H 0.091 0.909 19 C -0.195 4.195 20 N -0.558 5.558 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.005 4.005 26 C -0.267 4.267 27 C 0.317 3.683 28 O -0.439 6.439 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.184 0.816 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.156 0.844 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.266 -5.302 -8.320 9.946 hybrid contribution -0.353 0.674 0.827 1.124 sum -1.619 -4.628 -7.493 8.954 Atomic orbital electron populations 1.22295 0.76836 1.06459 1.03639 1.45029 1.09642 1.06704 1.58373 1.22019 0.92559 0.89887 0.91503 1.19464 0.92229 0.95310 1.15778 1.17772 0.80351 0.83186 0.83547 1.90750 1.48321 1.71715 1.32594 1.48254 1.57532 1.16898 1.08513 1.22992 0.99950 0.96833 0.82063 1.22114 0.89416 0.85065 0.96964 0.87204 1.22502 0.99139 0.97014 0.98718 1.22377 0.98274 0.96637 0.99005 1.22000 0.91617 0.96765 0.87132 0.90428 1.22407 0.97391 0.82546 0.99891 1.45128 1.63086 1.02761 1.19525 1.18925 1.09600 0.98570 1.08562 0.90897 1.24932 0.96021 0.98093 1.00472 1.69819 1.20849 1.25771 1.39407 0.86223 0.77629 0.80074 0.81919 1.21599 1.21092 1.21022 1.21330 1.00771 0.90302 0.88075 1.21945 0.92307 0.99886 1.12530 1.17209 0.89495 0.82589 0.78991 1.90904 1.69519 1.29993 1.53463 0.87670 0.89696 0.90106 0.81551 0.89399 0.92529 0.92704 0.93132 0.92524 0.92690 0.91689 0.90564 0.93465 0.84392 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.55 59.85 0.63 1.07 16 2 N -0.49 -5.94 2.95 -126.73 -0.37 -6.32 16 3 C 0.17 2.08 9.86 -16.43 -0.16 1.91 16 4 C -0.22 -3.08 3.75 -104.95 -0.39 -3.47 16 5 C 0.57 9.45 7.10 -12.50 -0.09 9.36 16 6 O -0.55 -10.76 16.57 5.28 0.09 -10.67 16 7 N -0.58 -10.11 2.29 -171.48 -0.39 -10.51 16 8 C 0.11 1.95 5.61 -2.14 -0.01 1.94 16 9 C 0.17 3.53 3.18 -64.56 -0.21 3.33 16 10 H 0.11 2.58 6.73 -51.93 -0.35 2.23 16 11 C -0.13 -2.37 6.19 -25.54 -0.16 -2.52 16 12 C -0.12 -2.11 6.17 -25.54 -0.16 -2.27 16 13 C 0.13 2.50 4.28 -65.63 -0.28 2.22 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.10 1.83 5.95 -3.19 -0.02 1.82 16 16 N -0.58 -13.00 2.76 -151.35 -0.42 -13.42 16 17 C -0.23 -5.67 10.35 -15.06 -0.16 -5.83 16 18 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 19 C 0.00 0.06 5.43 -17.43 -0.09 -0.03 16 20 N -0.91 -23.29 10.20 55.49 0.57 -22.72 16 21 Si 0.91 20.26 29.56 -169.99 -5.02 15.23 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 C 0.02 0.22 9.86 -39.12 -0.39 -0.16 16 26 C -0.25 -3.17 9.97 -39.44 -0.39 -3.57 16 27 C 0.51 7.47 7.40 -15.42 -0.11 7.36 16 28 O -0.56 -9.58 16.33 4.96 0.08 -9.50 16 29 H 0.10 1.04 6.83 -51.93 -0.35 0.69 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.17 1.68 8.05 -52.49 -0.42 1.25 16 33 H 0.09 1.88 7.40 -51.93 -0.38 1.49 16 34 H 0.06 0.96 6.47 -51.93 -0.34 0.62 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.32 7.08 -51.93 -0.37 0.96 16 41 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 42 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 43 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -30.10 347.04 -8.19 -38.29 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.96 Total: 3.23 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.99 Total: 11.14 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.62 Total: -52.96 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.17 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.10 -8.19 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029378007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.756 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds