Wall clock time and date at job start Tue Mar 31 2020 11:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34600 * 119.47633 * 2 1 4 4 C 1.38000 * 120.45685 * 180.28225 * 3 2 1 5 5 C 1.47459 * 120.25616 * 179.73929 * 4 3 2 6 6 O 1.21598 * 120.00064 * 255.53764 * 5 4 3 7 7 N 1.34777 * 119.99591 * 75.54639 * 5 4 3 8 8 C 1.47160 * 120.71506 * 5.85242 * 7 5 4 9 9 C 1.55889 * 107.94808 * 132.41436 * 8 7 5 10 10 H 1.09000 * 112.45792 * 181.85177 * 9 8 7 11 11 C 1.54548 * 108.44488 * 307.13538 * 9 8 7 12 12 C 1.53730 * 104.95308 * 88.28707 * 11 9 8 13 13 C 1.54548 * 104.95568 * 0.02562 * 12 11 9 14 14 H 1.09002 * 112.18001 * 146.28588 * 13 12 11 15 15 C 1.47168 * 120.70587 * 185.83888 * 7 5 4 16 16 N 1.48304 * 104.35655 * 24.57753 * 13 12 11 17 17 C 1.36936 * 128.07869 * 139.07914 * 16 13 12 18 18 H 1.07997 * 120.00258 * 338.22526 * 17 16 13 19 19 C 1.38814 * 119.99974 * 158.21903 * 17 16 13 20 20 N 1.31625 * 119.99780 * 354.02534 * 19 17 16 21 21 Si 1.86797 * 120.00083 * 174.02250 * 19 17 16 22 22 H 1.48503 * 109.47273 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47069 * 300.00006 * 21 19 17 24 24 H 1.48495 * 109.47016 * 60.00269 * 21 19 17 25 25 C 1.41597 * 119.48246 * 359.46707 * 4 3 2 26 26 C 1.35971 * 119.01074 * 0.24920 * 25 4 3 27 27 C 1.34536 * 119.47916 * 179.72198 * 2 1 3 28 28 O 1.21958 * 119.74745 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47081 * 180.28048 * 1 2 3 30 30 H 1.09001 * 109.47001 * 300.27424 * 1 2 3 31 31 H 1.08998 * 109.47169 * 60.28052 * 1 2 3 32 32 H 1.08001 * 119.77153 * 0.02925 * 3 2 1 33 33 H 1.08996 * 109.75230 * 252.37525 * 8 7 5 34 34 H 1.09004 * 109.74520 * 13.11157 * 8 7 5 35 35 H 1.09001 * 110.36725 * 207.00750 * 11 9 8 36 36 H 1.09001 * 110.36650 * 329.21360 * 11 9 8 37 37 H 1.09001 * 110.42203 * 241.06690 * 12 11 9 38 38 H 1.09010 * 110.20711 * 118.82270 * 12 11 9 39 39 H 1.09002 * 109.74724 * 107.62275 * 15 7 5 40 40 H 1.09001 * 109.78755 * 346.91674 * 15 7 5 41 41 H 0.97005 * 119.99761 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.48869 * 180.27195 * 25 4 3 43 43 H 1.08001 * 120.24498 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1718 0.0000 4 6 3.5071 1.1954 -0.0059 5 6 4.2282 2.4816 -0.0116 6 8 4.7506 2.8812 -1.0344 7 7 4.3083 3.2143 1.1168 8 6 3.7946 2.6891 2.3919 9 6 4.8839 2.9244 3.4820 10 1 4.5906 2.5314 4.4554 11 6 6.2179 2.3298 2.9766 12 6 6.8842 3.4666 2.1847 13 6 5.8962 4.6512 2.2797 14 1 6.4085 5.6129 2.3103 15 6 4.9116 4.5565 1.1001 16 7 5.1242 4.3878 3.5183 17 6 4.7302 5.2850 4.4748 18 1 5.2492 6.2264 4.5787 19 6 3.6636 4.9847 5.3109 20 7 2.9569 3.8926 5.1095 21 14 3.2313 6.1302 6.7216 22 1 2.0619 5.5879 7.4591 23 1 4.3902 6.2391 7.6437 24 1 2.8983 7.4737 6.1840 25 6 4.2250 -0.0251 -0.0004 26 6 3.5344 -1.1963 0.0053 27 6 2.1271 -1.1712 0.0057 28 8 1.5031 -2.2190 0.0103 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5181 0.8875 31 1 -0.3633 0.5095 -0.8925 32 1 1.5751 2.0999 0.0005 33 1 2.8766 3.2108 2.6621 34 1 3.5982 1.6211 2.2980 35 1 6.8464 2.0385 3.8182 36 1 6.0303 1.4727 2.3298 37 1 7.0262 3.1731 1.1446 38 1 7.8391 3.7322 2.6385 39 1 4.1331 5.3116 1.2087 40 1 5.4449 4.7097 0.1619 41 1 2.2117 3.6825 5.6940 42 1 5.3050 -0.0255 -0.0005 43 1 4.0618 -2.1388 0.0099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029378007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:43 Heat of formation + Delta-G solvation = -6.062950 kcal Electronic energy + Delta-G solvation = -27832.650533 eV Core-core repulsion = 24071.927560 eV Total energy + Delta-G solvation = -3760.722973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.57086 -41.35662 -39.37065 -37.93284 -35.69203 -35.29023 -34.22786 -32.23300 -31.16002 -30.95216 -28.82306 -27.74161 -25.88989 -25.35613 -24.98593 -23.94203 -21.69807 -21.19625 -20.35211 -19.19354 -18.65451 -18.05851 -17.63022 -17.35485 -17.05444 -16.73299 -16.52732 -16.23192 -15.54989 -15.29564 -14.95268 -14.78549 -14.59571 -14.38667 -14.31432 -13.96890 -13.54375 -13.47742 -13.29270 -13.22784 -13.03109 -12.88220 -12.73242 -12.60636 -12.52842 -11.98886 -11.81239 -11.49372 -11.44961 -11.18978 -11.16935 -11.09686 -10.98094 -10.56945 -9.70654 -9.07045 -8.58233 -7.84728 -5.21136 -0.23372 0.49042 1.39600 1.52159 1.53727 1.58434 1.70353 2.15107 2.51781 2.54803 3.36686 3.42234 3.53520 3.55999 3.80935 3.85933 4.10986 4.13362 4.18585 4.27346 4.35697 4.39797 4.40547 4.51309 4.60313 4.74211 4.78410 4.84421 4.89416 4.95945 5.01885 5.07712 5.11688 5.15551 5.19583 5.32730 5.37763 5.42047 5.59482 5.65391 5.85241 5.86052 6.27712 6.56781 6.82348 7.11517 7.16911 7.74874 8.57268 9.27625 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.004606 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.620471 B = 6077.782665 C = 7040.081097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.485 5.485 3 C 0.187 3.813 4 C -0.241 4.241 5 C 0.577 3.423 6 O -0.578 6.578 7 N -0.581 5.581 8 C 0.126 3.874 9 C 0.166 3.834 10 H 0.076 0.924 11 C -0.126 4.126 12 C -0.113 4.113 13 C 0.128 3.872 14 H 0.082 0.918 15 C 0.108 3.892 16 N -0.603 5.603 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.041 4.041 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.296 1.296 23 H -0.285 1.285 24 H -0.282 1.282 25 C 0.024 3.976 26 C -0.250 4.250 27 C 0.503 3.497 28 O -0.591 6.591 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.154 0.846 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -4.910 -8.885 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.191 5.191 3 C 0.055 3.945 4 C -0.249 4.249 5 C 0.365 3.635 6 O -0.459 6.459 7 N -0.311 5.311 8 C 0.002 3.998 9 C 0.059 3.941 10 H 0.094 0.906 11 C -0.165 4.165 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.100 0.900 15 C -0.016 4.016 16 N -0.325 5.325 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.223 1.223 23 H -0.212 1.212 24 H -0.208 1.208 25 C 0.002 3.998 26 C -0.272 4.272 27 C 0.307 3.693 28 O -0.477 6.477 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.172 0.828 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.944 -5.305 -9.182 10.647 hybrid contribution -0.465 0.728 1.057 1.365 sum -1.409 -4.578 -8.125 9.432 Atomic orbital electron populations 1.22562 0.74835 1.06437 1.05906 1.45137 1.10993 1.06121 1.56854 1.22292 0.92244 0.90553 0.89432 1.19331 0.93007 0.94395 1.18154 1.17959 0.79573 0.83467 0.82546 1.90743 1.49377 1.72497 1.33258 1.48192 1.57666 1.16793 1.08455 1.22570 0.97931 0.97297 0.81969 1.22078 0.91459 0.84418 0.96191 0.90615 1.22422 0.97378 0.97630 0.99113 1.22290 0.97982 0.95386 0.99567 1.22169 0.91821 0.97919 0.85996 0.89985 1.22252 0.96824 0.82665 0.99875 1.45284 1.63513 1.03284 1.20401 1.19138 1.09422 0.98897 1.09227 0.91226 1.25492 0.96410 0.99367 1.02390 1.69959 1.20955 1.26682 1.39787 0.85387 0.76843 0.78654 0.79684 1.22260 1.21165 1.20817 1.21430 1.01539 0.89588 0.87280 1.22036 0.91748 1.00608 1.12791 1.17518 0.90158 0.82724 0.78889 1.90887 1.70265 1.31210 1.55357 0.88817 0.87991 0.87326 0.79284 0.92362 0.90828 0.92588 0.91318 0.91454 0.91720 0.93173 0.89554 0.94193 0.82831 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.55 127.77 1.35 2.02 16 2 N -0.48 -10.81 2.95 -673.12 -1.99 -12.80 16 3 C 0.19 4.08 9.86 84.21 0.83 4.91 16 4 C -0.24 -6.20 3.75 -20.08 -0.08 -6.28 16 5 C 0.58 18.00 7.10 86.67 0.62 18.62 16 6 O -0.58 -21.16 16.57 -4.02 -0.07 -21.22 16 7 N -0.58 -19.27 2.29 -814.69 -1.86 -21.13 16 8 C 0.13 4.56 5.61 87.25 0.49 5.05 16 9 C 0.17 6.74 3.18 46.16 0.15 6.88 16 10 H 0.08 3.61 6.73 -2.39 -0.02 3.60 16 11 C -0.13 -4.21 6.19 31.37 0.19 -4.01 16 12 C -0.11 -3.60 6.17 31.37 0.19 -3.40 16 13 C 0.13 4.66 4.28 45.49 0.19 4.86 16 14 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 15 C 0.11 3.76 5.95 86.57 0.51 4.27 16 16 N -0.60 -26.69 2.76 -632.76 -1.75 -28.44 16 17 C -0.24 -11.85 10.35 84.03 0.87 -10.98 16 18 H 0.07 3.42 7.84 -2.91 -0.02 3.40 16 19 C -0.04 -2.06 5.43 84.86 0.46 -1.60 16 20 N -0.93 -47.92 10.20 21.65 0.22 -47.70 16 21 Si 0.96 41.90 29.56 68.60 2.03 43.93 16 22 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.02 0.55 9.86 22.57 0.22 0.77 16 26 C -0.25 -6.05 9.97 22.36 0.22 -5.83 16 27 C 0.50 13.96 7.40 84.89 0.63 14.59 16 28 O -0.59 -20.09 16.33 -5.18 -0.08 -20.18 16 29 H 0.09 1.76 6.83 -2.39 -0.02 1.74 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.19 3.24 8.05 -2.91 -0.02 3.21 16 33 H 0.06 2.48 7.40 -2.39 -0.02 2.46 16 34 H 0.07 2.39 6.47 -2.38 -0.02 2.37 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.03 7.88 -2.39 -0.02 2.01 16 37 H 0.07 2.02 7.86 -2.39 -0.02 2.00 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.92 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 2.84 7.08 -2.39 -0.02 2.83 16 41 H 0.25 12.76 8.31 -92.70 -0.77 11.99 16 42 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -64.42 347.04 4.37 -60.05 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.02 Total: 17.62 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 6.86 Total: 29.87 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.38 Total: -110.07 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.15 Total: -41.40 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -64.42 4.37 -60.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029378007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.988 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds