Wall clock time and date at job start Tue Mar 31 2020 11:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35586 * 118.80279 * 2 1 4 4 C 1.34866 * 121.79713 * 179.97438 * 3 2 1 5 5 C 1.41667 * 119.33874 * 359.79735 * 4 3 2 6 6 O 1.22088 * 121.06466 * 180.21292 * 5 4 3 7 7 C 1.47091 * 117.86660 * 0.42148 * 5 4 3 8 8 C 1.47293 * 120.88492 * 179.82214 * 7 5 4 9 9 O 1.21611 * 119.99783 * 31.66907 * 8 7 5 10 10 N 1.34778 * 119.99844 * 211.67333 * 8 7 5 11 11 C 1.47157 * 120.71058 * 3.75077 * 10 8 7 12 12 C 1.55891 * 107.95102 * 132.45452 * 11 10 8 13 13 H 1.09001 * 112.45391 * 181.85169 * 12 11 10 14 14 C 1.54550 * 108.44047 * 307.13197 * 12 11 10 15 15 C 1.53725 * 104.95703 * 88.28944 * 14 12 11 16 16 C 1.54548 * 104.95279 * 359.97438 * 15 14 12 17 17 H 1.09008 * 112.18363 * 146.28415 * 16 15 14 18 18 C 1.47161 * 120.70526 * 183.76956 * 10 8 7 19 19 N 1.48305 * 106.17927 * 58.77619 * 12 11 10 20 20 C 1.36937 * 128.07098 * 106.43954 * 19 12 11 21 21 H 1.08007 * 119.99891 * 164.62241 * 20 19 12 22 22 C 1.38806 * 120.00583 * 344.62803 * 20 19 12 23 23 N 1.31621 * 119.99928 * 350.74285 * 22 20 19 24 24 Si 1.86797 * 120.00111 * 170.74302 * 22 20 19 25 25 H 1.48510 * 109.47141 * 269.99445 * 24 22 20 26 26 H 1.48497 * 109.47370 * 29.99832 * 24 22 20 27 27 H 1.48505 * 109.47411 * 150.00213 * 24 22 20 28 28 C 1.34345 * 118.80879 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47275 * 270.01867 * 1 2 3 30 30 H 1.08997 * 109.47226 * 30.02733 * 1 2 3 31 31 H 1.09003 * 109.46598 * 150.02307 * 1 2 3 32 32 H 1.08002 * 119.10036 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.32274 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.75288 * 252.41053 * 11 10 8 35 35 H 1.09000 * 109.75172 * 13.09668 * 11 10 8 36 36 H 1.09003 * 110.36618 * 207.00556 * 14 12 11 37 37 H 1.09003 * 110.36469 * 329.20769 * 14 12 11 38 38 H 1.08999 * 110.42087 * 241.06794 * 15 14 12 39 39 H 1.08994 * 110.21390 * 118.81937 * 15 14 12 40 40 H 1.09001 * 109.74581 * 107.58906 * 18 10 8 41 41 H 1.09002 * 109.79349 * 346.88447 * 18 10 8 42 42 H 0.96996 * 119.99959 * 180.02562 * 23 22 20 43 43 H 1.08006 * 119.80871 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4651 1.2586 0.0005 5 6 4.2228 0.0616 0.0054 6 8 5.4434 0.0886 0.0099 7 6 3.4918 -1.2149 0.0002 8 6 4.2130 -2.4992 0.0010 9 8 5.2900 -2.5914 0.5582 10 7 3.6793 -3.5720 -0.6160 11 6 2.4175 -3.4580 -1.3646 12 6 2.6149 -4.1505 -2.7472 13 1 1.7289 -4.0803 -3.3782 14 6 3.8729 -3.5537 -3.4178 15 6 5.0396 -4.4178 -2.9125 16 6 4.3870 -5.4626 -1.9792 17 1 4.8995 -6.4240 -2.0156 18 6 4.3458 -4.8826 -0.5550 19 7 2.9856 -5.5567 -2.4559 20 6 2.2155 -6.6799 -2.5988 21 1 2.6774 -7.6562 -2.5890 22 6 0.8413 -6.5640 -2.7564 23 7 0.2556 -5.3974 -2.5874 24 14 -0.1769 -8.0635 -3.2083 25 1 -0.2668 -8.1735 -4.6866 26 1 0.4678 -9.2834 -2.6594 27 1 -1.5413 -7.9255 -2.6385 28 6 2.1124 -1.1772 0.0005 29 1 -0.3634 0.0003 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5444 2.1031 -0.0004 33 1 3.9609 2.2180 0.0009 34 1 1.6158 -3.9481 -0.8121 35 1 2.1720 -2.4067 -1.5148 36 1 3.7942 -3.6246 -4.5027 37 1 4.0076 -2.5153 -3.1151 38 1 5.7526 -3.8075 -2.3582 39 1 5.5324 -4.9120 -3.7497 40 1 3.7852 -5.5508 0.0988 41 1 5.3609 -4.7632 -0.1763 42 1 -0.7047 -5.3165 -2.6971 43 1 1.5500 -2.0992 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029388860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:26 Heat of formation + Delta-G solvation = 26.291070 kcal Electronic energy + Delta-G solvation = -28131.115559 eV Core-core repulsion = 24371.795562 eV Total energy + Delta-G solvation = -3759.319997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09894 -39.61705 -37.95923 -37.13732 -33.85331 -32.73433 -32.47819 -31.72604 -30.21821 -29.26464 -27.14196 -26.27620 -24.60351 -24.13116 -23.33891 -22.51992 -20.16326 -19.61866 -18.77180 -17.82276 -17.30619 -16.83762 -16.30313 -15.87951 -15.36551 -15.18389 -15.03507 -14.55864 -14.28173 -13.79429 -13.75351 -13.50064 -13.25753 -13.03664 -12.93015 -12.69195 -12.51025 -12.35928 -12.05556 -11.77808 -11.64942 -11.47958 -11.12304 -10.92419 -10.80487 -10.33735 -10.09124 -9.85287 -9.72039 -9.58483 -9.53318 -9.43971 -9.01077 -8.74093 -8.03260 -7.83105 -6.85565 -5.92928 -3.25240 1.03090 1.37933 2.38467 3.30083 3.33722 3.37062 3.37901 3.63432 4.06783 4.23056 4.36885 4.44009 4.68558 4.82688 4.84183 5.10623 5.17117 5.22546 5.27894 5.35918 5.63258 5.73395 5.76254 5.80691 5.82216 5.91958 5.93501 6.15153 6.31062 6.41527 6.43673 6.58065 6.58728 6.64035 6.65348 6.73151 6.78449 6.92310 6.98131 7.23749 7.45259 7.61122 8.06711 8.17957 8.31239 8.90246 8.99913 9.61546 10.39795 11.21214 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.004989 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.236039 B = 5610.936698 C = 6773.958688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.477 5.477 3 C 0.128 3.872 4 C -0.275 4.275 5 C 0.409 3.591 6 O -0.493 6.493 7 C -0.293 4.293 8 C 0.570 3.430 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.092 3.908 12 C 0.169 3.831 13 H 0.120 0.880 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.134 3.866 17 H 0.077 0.923 18 C 0.106 3.894 19 N -0.586 5.586 20 C -0.217 4.217 21 H 0.077 0.923 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.292 1.292 28 C 0.164 3.836 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 12.149 3.094 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.163 5.163 3 C 0.004 3.996 4 C -0.300 4.300 5 C 0.295 3.705 6 O -0.375 6.375 7 C -0.304 4.304 8 C 0.359 3.641 9 O -0.417 6.417 10 N -0.328 5.328 11 C -0.032 4.032 12 C 0.061 3.939 13 H 0.137 0.863 14 C -0.173 4.173 15 C -0.163 4.163 16 C 0.026 3.974 17 H 0.095 0.905 18 C -0.018 4.018 19 N -0.307 5.307 20 C -0.345 4.345 21 H 0.094 0.906 22 C -0.201 4.201 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.218 1.218 28 C 0.035 3.965 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.168 0.832 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.963 11.980 3.362 13.058 hybrid contribution -0.928 -0.673 -0.236 1.170 sum -4.890 11.307 3.126 12.710 Atomic orbital electron populations 1.22508 0.76121 1.05911 1.04243 1.42735 1.08643 1.04460 1.60497 1.21677 0.94290 0.88447 0.95222 1.22409 0.93163 1.01232 1.13149 1.18175 0.89197 0.87006 0.76074 1.90783 1.14484 1.89105 1.43145 1.22481 0.92350 0.97317 1.18223 1.17503 0.84963 0.82426 0.79256 1.90745 1.21140 1.83976 1.45851 1.48073 1.24980 1.08714 1.51007 1.23341 0.84753 0.99012 0.96106 1.22280 0.95935 0.83494 0.92162 0.86294 1.22487 0.97296 0.97984 0.99538 1.22361 0.97475 0.97679 0.98774 1.21987 0.88086 0.96302 0.91063 0.90489 1.22281 0.97259 0.83027 0.99237 1.45202 1.08744 1.02778 1.73985 1.19067 0.88048 0.85070 1.42345 0.90563 1.24765 0.96095 0.97173 1.02104 1.69811 1.09283 1.22613 1.55046 0.86110 0.79456 0.81966 0.78160 1.21652 1.20674 1.21806 1.22905 0.93707 0.89346 0.90576 0.90255 0.89091 0.88415 0.82114 0.83231 0.89876 0.92075 0.92808 0.93122 0.92360 0.92750 0.91997 0.90534 0.93749 0.80191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 10.53 59.85 0.63 0.88 16 2 N -0.48 -4.28 2.97 -124.39 -0.37 -4.65 16 3 C 0.13 1.09 10.17 -17.09 -0.17 0.91 16 4 C -0.27 -3.42 10.01 -39.47 -0.40 -3.82 16 5 C 0.41 7.47 6.94 -34.68 -0.24 7.23 16 6 O -0.49 -11.33 16.85 -10.44 -0.18 -11.51 16 7 C -0.29 -5.15 5.57 -102.72 -0.57 -5.72 16 8 C 0.57 11.96 7.39 -12.58 -0.09 11.87 16 9 O -0.54 -13.32 15.61 -10.01 -0.16 -13.48 16 10 N -0.59 -11.79 2.29 -171.61 -0.39 -12.19 16 11 C 0.09 1.74 4.17 -2.14 -0.01 1.73 16 12 C 0.17 3.60 3.22 -64.58 -0.21 3.39 16 13 H 0.12 2.81 6.35 -51.93 -0.33 2.48 16 14 C -0.13 -2.61 6.19 -25.54 -0.16 -2.77 16 15 C -0.12 -2.40 6.18 -25.54 -0.16 -2.55 16 16 C 0.13 2.74 4.27 -65.68 -0.28 2.46 16 17 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 18 C 0.11 2.15 5.94 -3.25 -0.02 2.13 16 19 N -0.59 -13.56 2.78 -151.42 -0.42 -13.98 16 20 C -0.22 -5.49 10.37 -15.06 -0.16 -5.65 16 21 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 22 C -0.01 -0.13 5.42 -17.43 -0.09 -0.22 16 23 N -0.92 -23.09 10.40 55.49 0.58 -22.51 16 24 Si 0.91 20.36 29.56 -169.99 -5.03 15.33 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.16 2.11 7.68 -16.54 -0.13 1.98 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.20 7.96 -51.93 -0.41 -0.21 16 31 H 0.10 0.49 7.96 -51.93 -0.41 0.07 16 32 H 0.16 0.60 7.97 -52.49 -0.42 0.18 16 33 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.08 1.72 7.54 -51.93 -0.39 1.33 16 35 H 0.06 1.01 4.59 -51.93 -0.24 0.77 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 38 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 42 H 0.25 6.19 8.31 -40.82 -0.34 5.85 16 43 H 0.18 2.23 5.41 -52.48 -0.28 1.95 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -35.04 341.34 -8.63 -43.67 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.76 Total: 2.34 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -2.05 Total: 11.82 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.61 Total: -53.32 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.33 Total: -24.99 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.04 -8.63 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029388860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.960 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds