Wall clock time and date at job start Tue Mar 31 2020 11:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35586 * 118.80279 * 2 1 4 4 C 1.34866 * 121.79713 * 179.97438 * 3 2 1 5 5 C 1.41667 * 119.33874 * 359.79735 * 4 3 2 6 6 O 1.22088 * 121.06466 * 180.21292 * 5 4 3 7 7 C 1.47091 * 117.86660 * 0.42148 * 5 4 3 8 8 C 1.47293 * 120.88492 * 179.82214 * 7 5 4 9 9 O 1.21611 * 119.99783 * 31.66907 * 8 7 5 10 10 N 1.34778 * 119.99844 * 211.67333 * 8 7 5 11 11 C 1.47157 * 120.71058 * 3.75077 * 10 8 7 12 12 C 1.55891 * 107.95102 * 132.45452 * 11 10 8 13 13 H 1.09001 * 112.45391 * 181.85169 * 12 11 10 14 14 C 1.54550 * 108.44047 * 307.13197 * 12 11 10 15 15 C 1.53725 * 104.95703 * 88.28944 * 14 12 11 16 16 C 1.54548 * 104.95279 * 359.97438 * 15 14 12 17 17 H 1.09008 * 112.18363 * 146.28415 * 16 15 14 18 18 C 1.47161 * 120.70526 * 183.76956 * 10 8 7 19 19 N 1.48305 * 106.17927 * 58.77619 * 12 11 10 20 20 C 1.36937 * 128.07098 * 106.43954 * 19 12 11 21 21 H 1.08007 * 119.99891 * 164.62241 * 20 19 12 22 22 C 1.38806 * 120.00583 * 344.62803 * 20 19 12 23 23 N 1.31621 * 119.99928 * 350.74285 * 22 20 19 24 24 Si 1.86797 * 120.00111 * 170.74302 * 22 20 19 25 25 H 1.48510 * 109.47141 * 269.99445 * 24 22 20 26 26 H 1.48497 * 109.47370 * 29.99832 * 24 22 20 27 27 H 1.48505 * 109.47411 * 150.00213 * 24 22 20 28 28 C 1.34345 * 118.80879 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47275 * 270.01867 * 1 2 3 30 30 H 1.08997 * 109.47226 * 30.02733 * 1 2 3 31 31 H 1.09003 * 109.46598 * 150.02307 * 1 2 3 32 32 H 1.08002 * 119.10036 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.32274 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.75288 * 252.41053 * 11 10 8 35 35 H 1.09000 * 109.75172 * 13.09668 * 11 10 8 36 36 H 1.09003 * 110.36618 * 207.00556 * 14 12 11 37 37 H 1.09003 * 110.36469 * 329.20769 * 14 12 11 38 38 H 1.08999 * 110.42087 * 241.06794 * 15 14 12 39 39 H 1.08994 * 110.21390 * 118.81937 * 15 14 12 40 40 H 1.09001 * 109.74581 * 107.58906 * 18 10 8 41 41 H 1.09002 * 109.79349 * 346.88447 * 18 10 8 42 42 H 0.96996 * 119.99959 * 180.02562 * 23 22 20 43 43 H 1.08006 * 119.80871 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4651 1.2586 0.0005 5 6 4.2228 0.0616 0.0054 6 8 5.4434 0.0886 0.0099 7 6 3.4918 -1.2149 0.0002 8 6 4.2130 -2.4992 0.0010 9 8 5.2900 -2.5914 0.5582 10 7 3.6793 -3.5720 -0.6160 11 6 2.4175 -3.4580 -1.3646 12 6 2.6149 -4.1505 -2.7472 13 1 1.7289 -4.0803 -3.3782 14 6 3.8729 -3.5537 -3.4178 15 6 5.0396 -4.4178 -2.9125 16 6 4.3870 -5.4626 -1.9792 17 1 4.8995 -6.4240 -2.0156 18 6 4.3458 -4.8826 -0.5550 19 7 2.9856 -5.5567 -2.4559 20 6 2.2155 -6.6799 -2.5988 21 1 2.6774 -7.6562 -2.5890 22 6 0.8413 -6.5640 -2.7564 23 7 0.2556 -5.3974 -2.5874 24 14 -0.1769 -8.0635 -3.2083 25 1 -0.2668 -8.1735 -4.6866 26 1 0.4678 -9.2834 -2.6594 27 1 -1.5413 -7.9255 -2.6385 28 6 2.1124 -1.1772 0.0005 29 1 -0.3634 0.0003 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5444 2.1031 -0.0004 33 1 3.9609 2.2180 0.0009 34 1 1.6158 -3.9481 -0.8121 35 1 2.1720 -2.4067 -1.5148 36 1 3.7942 -3.6246 -4.5027 37 1 4.0076 -2.5153 -3.1151 38 1 5.7526 -3.8075 -2.3582 39 1 5.5324 -4.9120 -3.7497 40 1 3.7852 -5.5508 0.0988 41 1 5.3609 -4.7632 -0.1763 42 1 -0.7047 -5.3165 -2.6971 43 1 1.5500 -2.0992 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029388860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:25 Heat of formation + Delta-G solvation = 4.287155 kcal Electronic energy + Delta-G solvation = -28132.069720 eV Core-core repulsion = 24371.795562 eV Total energy + Delta-G solvation = -3760.274159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.25592 -41.08781 -39.37786 -38.63224 -35.51174 -34.45357 -33.44756 -33.07959 -31.75564 -31.04069 -28.22496 -27.49925 -26.05845 -25.69012 -24.83401 -23.68617 -21.66606 -21.25443 -20.40879 -19.18155 -18.50625 -17.91216 -17.75712 -17.10937 -16.97324 -16.55606 -16.34159 -16.20886 -15.53895 -15.35911 -15.06332 -14.77121 -14.66081 -14.64312 -14.33420 -13.98845 -13.57923 -13.55214 -13.30628 -13.21201 -13.12607 -12.92747 -12.73882 -12.57036 -12.53302 -12.01172 -11.83822 -11.52218 -11.47031 -11.16518 -11.11570 -10.74352 -10.52739 -10.28819 -9.72533 -9.01982 -8.64992 -7.83014 -5.16466 -0.10674 0.39938 1.53032 1.55767 1.56166 1.61481 1.85366 2.14629 2.54052 2.78889 3.34354 3.36570 3.47579 3.56784 3.82099 3.93768 4.02321 4.07460 4.18290 4.21669 4.29909 4.35753 4.46511 4.53078 4.57707 4.67963 4.71666 4.77755 4.85163 4.91199 4.93835 5.00150 5.02252 5.09063 5.27083 5.29284 5.39329 5.53808 5.63330 5.72264 5.82664 5.87093 6.24723 6.59080 7.09915 7.11881 7.31240 7.73030 8.54317 9.29605 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.004989 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.236039 B = 5610.936698 C = 6773.958688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.459 5.459 3 C 0.169 3.831 4 C -0.300 4.300 5 C 0.386 3.614 6 O -0.574 6.574 7 C -0.346 4.346 8 C 0.566 3.434 9 O -0.590 6.590 10 N -0.593 5.593 11 C 0.109 3.891 12 C 0.166 3.834 13 H 0.100 0.900 14 C -0.126 4.126 15 C -0.116 4.116 16 C 0.133 3.867 17 H 0.083 0.917 18 C 0.110 3.890 19 N -0.600 5.600 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.042 4.042 23 N -0.928 5.928 24 Si 0.968 3.032 25 H -0.292 1.292 26 H -0.281 1.281 27 H -0.292 1.292 28 C 0.201 3.799 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.165 0.835 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 14.137 2.737 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.142 5.142 3 C 0.043 3.957 4 C -0.323 4.323 5 C 0.280 3.720 6 O -0.463 6.463 7 C -0.356 4.356 8 C 0.357 3.643 9 O -0.472 6.472 10 N -0.325 5.325 11 C -0.015 4.015 12 C 0.059 3.941 13 H 0.118 0.882 14 C -0.165 4.165 15 C -0.155 4.155 16 C 0.025 3.975 17 H 0.101 0.899 18 C -0.015 4.015 19 N -0.322 5.322 20 C -0.366 4.366 21 H 0.089 0.911 22 C -0.237 4.237 23 N -0.575 5.575 24 Si 0.798 3.202 25 H -0.220 1.220 26 H -0.207 1.207 27 H -0.218 1.218 28 C 0.067 3.933 29 H 0.120 0.880 30 H 0.150 0.850 31 H 0.115 0.885 32 H 0.247 0.753 33 H 0.183 0.817 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.654 13.999 2.996 16.234 hybrid contribution -0.038 -1.259 -0.110 1.264 sum -7.692 12.740 2.886 15.160 Atomic orbital electron populations 1.23014 0.72289 1.08042 1.06474 1.43338 1.10899 1.03522 1.56430 1.22547 0.93267 0.89954 0.89898 1.22354 0.94704 0.99479 1.15792 1.18938 0.88861 0.89040 0.75162 1.90734 1.17274 1.90055 1.48243 1.22205 0.94203 0.95562 1.23641 1.18090 0.84542 0.83556 0.78118 1.90695 1.23567 1.84879 1.48036 1.48094 1.25105 1.08398 1.50901 1.23149 0.83745 1.00112 0.94469 1.22258 0.95695 0.83098 0.93042 0.88236 1.22410 0.96408 0.97903 0.99822 1.22275 0.97216 0.97261 0.98795 1.22072 0.87293 0.96986 0.91147 0.89869 1.22156 0.96897 0.83412 0.99025 1.45320 1.09448 1.03040 1.74385 1.19241 0.88706 0.85651 1.42952 0.91135 1.25332 0.96729 0.99320 1.02292 1.69905 1.09280 1.23377 1.54981 0.85254 0.77966 0.79631 0.77352 1.21965 1.20667 1.21847 1.22822 0.91959 0.91351 0.87211 0.87956 0.85023 0.88467 0.75273 0.81727 0.91302 0.89452 0.92062 0.92880 0.93341 0.91403 0.92840 0.91184 0.93816 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.11 10.53 127.77 1.35 1.45 16 2 N -0.46 -5.90 2.97 -547.45 -1.63 -7.52 16 3 C 0.17 1.91 10.17 83.34 0.85 2.76 16 4 C -0.30 -6.84 10.01 22.34 0.22 -6.62 16 5 C 0.39 14.56 6.94 25.44 0.18 14.74 16 6 O -0.57 -28.46 16.85 9.00 0.15 -28.31 16 7 C -0.35 -12.29 5.57 -18.63 -0.10 -12.40 16 8 C 0.57 24.86 7.39 86.62 0.64 25.50 16 9 O -0.59 -31.28 15.61 10.54 0.16 -31.12 16 10 N -0.59 -24.18 2.29 -815.11 -1.87 -26.05 16 11 C 0.11 4.08 4.17 87.25 0.36 4.44 16 12 C 0.17 7.05 3.22 46.17 0.15 7.19 16 13 H 0.10 4.66 6.35 -2.39 -0.02 4.64 16 14 C -0.13 -4.90 6.19 31.37 0.19 -4.70 16 15 C -0.12 -4.55 6.18 31.36 0.19 -4.36 16 16 C 0.13 5.53 4.27 45.45 0.19 5.73 16 17 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 18 C 0.11 4.62 5.94 86.53 0.51 5.14 16 19 N -0.60 -27.94 2.78 -632.97 -1.76 -29.70 16 20 C -0.24 -12.01 10.37 84.03 0.87 -11.14 16 21 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 22 C -0.04 -2.07 5.42 84.86 0.46 -1.61 16 23 N -0.93 -45.82 10.40 21.65 0.23 -45.60 16 24 Si 0.97 41.41 29.56 68.60 2.03 43.44 16 25 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 28 C 0.20 4.68 7.68 84.25 0.65 5.33 16 29 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 31 H 0.10 0.42 7.96 -2.39 -0.02 0.40 16 32 H 0.23 -0.36 7.97 -2.91 -0.02 -0.39 16 33 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.07 2.81 7.54 -2.39 -0.02 2.79 16 35 H 0.09 2.76 4.59 -2.39 -0.01 2.75 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 2.02 7.88 -2.39 -0.02 2.00 16 38 H 0.05 1.99 7.86 -2.39 -0.02 1.97 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.07 3.02 7.09 -2.39 -0.02 3.01 16 42 H 0.25 12.06 8.31 -92.71 -0.77 11.29 16 43 H 0.19 4.18 5.41 -2.91 -0.02 4.16 16 Total: -1.00 -84.29 341.34 5.06 -79.23 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.03 Total: 14.17 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: 6.71 Total: 31.46 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.03 Total: -108.87 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: 0.32 Total: -59.42 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -84.29 5.06 -79.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029388860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.516 kcal (2) G-P(sol) polarization free energy of solvation -84.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds